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In 1992, the international regime 'Agenda 21' was agreed upon. Accordingly, countries worldwide have been undergoing reforms in their water management into Integrated Water Resources Management (IWRM). The implementation is promoted by international actors. The main institutional aspects of IWRM are the river basin approach, clear property rights allocation, and application of economical instruments. In former centrally planned economies, the process of IWRM implementation has been coincided with transformation for the market economy. The implementation of institutional aspects of IWRM in countries under transition is connected with high transaction costs. Against this background, the comparative empirical study was initialised in order to analyse institutional change of water management towards IWRM in Vietnam and in Poland. Two models of river basin organisations were examined. Consequently, pros and cons of decentralised polycentric and hierarchical unicentric river basin organisations have been evaluated. Formal institutions were studied with the use of an in-depth review of legislation in Vietnam and in Poland. The EU Water Frame Directive (EU WFD) and other international policies were also examined. For the empirical study in Vietnam and in Poland, actors were interviewed as experts. The results of the study on both countries were discussed separately, and conclusions were drawn in a comparative manner. Water management reforms towards IWRM in Vietnam and in Poland have been generating multi-level governance processes including international, national and sub-national levels. The implementation of IWRM in Vietnam is supported by international donor agencies. In Poland, the implementation of the EU WFD is coordinated by the European Commission in a hierarchical manner. In comparison to international joint-development projects in Vietnam, the European Commission enforces international IWRM policy more effectively. Since the resumption of ODA in early 1990s, water resources management has been institutionalised in Vietnam by international support. In 1998, a Water Law was established in Vietnam. The intended separation of water resources management from water service provisions caused fragmentation between the Ministry of Natural Resources and Environment, and the Ministry of Agriculture and Rural Development, respectively. This ‘silo-effect’ has been intensified by the competition for international ODA. The power struggles affect even agencies within ministries. Polycentric river basin committees have been established as entities subordinated to the Ministry of Agriculture and Rural Development, as well as the Ministry of Natural Resources and Environment. However, because of weak property rights allocation and the absence of administrative powers, the river basin organisations work ineffectively. The river basin has not yet been established as a sub-national area of political action. Decisions sustained to be made at central level and are affected by the information problem due to largely centralised organisations of Vietnamese water management. The sub-national level is characterised by very low planning and management capacities. In Poland, unicentric river basin organisations were established in 1991. They are aligned with hydrological borders. Water resources planning and management are carried out according to river basins and water regions in order to implement the EU WFD. The river basin has been established as a new area of decision-making. Conflicts between local-governments have been resolved after the reforms. Nevertheless, spatial management planning, environmental protection planning, water service delivery, etc., are further carried out by local self-governments. To integrate water resources planning and management with these services, horizontal coordination is of critical importance. However, this is hampered by problems of ‘spatial fit’. Moreover, a high degree of horizontal cross-border communication increases information problems in hierarchical organisations. Thus, features of polycentric governance models become increasingly important in order to fully implement the EU WFD in Poland.
This thesis constitutes a computational study of charge and ion drag force on micron-sized dust particles immersed in rf discharges. Knowledge of dust parameters like dust charge, floating potential, shielding and ion drag force is very crucial for explaining complex laboratory dusty plasma phenomena, such as void formation in microgravity experiments and wakefield formation in the sheaths. Existing theoretical models assume standard distribution functions for plasma species and are applicable over a limited range of flow velocities and collisionality. Kinetic simulations are suitable tools for studying dust charging and drag force computation. The main aim of this thesis is to perform three dimensional simulations using a Particle-Particle-Particle-Mesh ($P^3M$) model to understand how the dust parameters vary for different positions of dust in rf discharges and how these parameters on a dust evolve in the presence of neighboring dust particles. At first, rf discharges in argon have been modelled using a three-dimensional PIC-MCC code for the discharge conditions relevant to the dusty plasma experiments. All necessary elastic and inelastic collisions have been considered. The plasma background is found collisional, charge-exchange collisions between ions and neutrals being dominant. Electron and ion distributions are non-Maxwellian. The dominant heating mechanism is Ohmic. Then, simulations have been done to compute the dust parameters for various sizes of dust located at different positions in the rf discharges. Dust charge and floating potential in the presheath are slightly larger than the values in the bulk due to the higher electron flux to the dust particle in the presheath. From presheath to the sheath the charge and floating potential values decrease due to the decrease of the electron current to the dust. A linear dependence of dust potential on dust size has been found, which results in a nonlinear dependence of the dust charge with the dust size when the particle is assumed to be a spherical capacitor. This has been verified by independently counting the charges collected by the dust. %where indeed it has been noted that the dust charge %scales nonlinearly with the dust size. The computed dust parameters are also compared with theoretical models. Simulated dust floating potentials are comparable to values obtained from Allen-Boyd-Reynolds (ABR) and Khrapak models, but much smaller than the values obtained from Orbit Motion Limited (OML) model. The dust potential distribution behaves Debye-H\"{u}ckel-like. The shielding lengths are in between ion and electron Debye lengths. % indicating shielding by both ions and electrons. Further, the orbital drag force is typically larger than the collection drag force. The total drag force for the collisional case is larger than for the collisionless case and it scales nonlinearly with the dust size. The collection drag values and size-scaling agrees with Zobnin's model. The charging and drag force computation is then extended to two and multiple static dust particles in the rf discharge to study the influence of neighboring dust particles on the dust parameters. Initially, the dust parameters on two dust particles are computed for various interparticle separation distances and for dust particles placed at different locations in the rf discharge. It is observed that for dust separations larger than the shielding length the dust parameters for the two dust particles match with the single dust particle values. As the dust separation is equal to or less than the shielding length the ion drag force increases due to the buildup of a parallel drag force component. However, the main dust properties like charge, potential, vertical component of ion drag are not affected considerably. This is attributed to the smaller collection impact parameter values compared to the dust separation. %This is because the %collection impact parameter values in the sheath and the presheath are smaller %than the smallest dust separation and in case of the dust in the bulk, the %collection impact parameter is comparable with the dust separation. Then the dust charges on multiple dust particles located at different positions in the discharge and arranged along the discharge axis are also computed. It is found that the charges of the multiple dust particles in the bulk or presheath do not differ much from the single particle values at that location. But the dust charges of multiple dust particles located in the sheath drastically differ from the single dust parameter values. Due to ion focusing from dust particles in the upper layers, the ion current increases to dust particles in the lower layers resulting in smaller charge values. This is as well the case where dust particles are vertically aligned as in the standard experiments of dusty plasmas. In conclusion, this work used a fully kinetic (PIC and MD or $P^3M$) model to study the physics of dust charging in rf plasmas. Our simulations revealed that the dust parameters vary considerably from the bulk to the sheath. The CX collisions increase flux to the dust thereby affecting the dust parameters and their scaling with dust size. Also, a dust particle affects the charging dynamics of its neighbor only when their separation is within the shielding length. In the plasma sheath, ion focussing can cause great reduction in dust charges.
ZfSl 54 (2009) 2, 224-240 Ulrike Jekutsch Zur Schau gestellte Fiktion: Die Erfindung polnischer Frühgeschichte in Słowackis Tragödien „Balladyna“ und „Lilla Weneda“SummaryJuliusz Słowacki’s tragedies “Balladyna” (1834, publ. 1839) and “Lilla Weneda” (1840) are set in legendary pre-historical times. Reflecting the Polish nation-building process, they outline invented episodes und char-acters in the beginnings of the first Polish state. With these plays, Słowacki wanted to give his people poeti-cally created legends, which would enrich their scanty stock of stories from pre-historical times and fill out the gaps in their national historical knowledge. Słowacki’s foreword to “Balladyna” serves as an introduc-tion to a projected cycle of plays about Polish pre-history. Here, the playwright openly exposes the fictional-ity of both characters and plot, and he draws attention to the many historical inconsistencies and anachro-nisms in the text. At the same time, he claims that the intrinsic truth of poetry ranks higher than mere factual accuracy, and that his plays, despite their historical inaccuracy, may become Polish-pre-history. His inven-tion of new episodes of Polish pre-history is aimed polemically against contemporary historiography – espe-cially against two issues, i. e. first, romantic historiography’s pretension to play the role of universal art (Universalwissenschaft), and secondly, the traditional Polish idealization of known figures of pre-history. The article discusses these two aspects of Słowacki’s plays, focussing on his polemics against contemporary Polish historiography and especially against Joachim Lelewel.
Solifuges (Solifugae, Arachnida) are an important element of the fauna especially in arid and desert environments. Unfortunately, this animal group has only been extremely poorly studied not only in terms of morphology, but also ecology, physiology, systematics and phylogeny. The present study aimed to provide a detailed overview of their anatomy and ultrastructure. Representatives of these peculiar animals were investigated by means of light and electron microscopy in order to gain new insights in their functional morphology and also to evaluate potential characters for their systematic and future phylogenetic studies. The histology and ultrastructure of the following organ systems have been investigated: tarsal structures, sensory structures and nervous system, coxal glands, alimentary system, respiratory system, circulatory system and reproductive systems. Additionally, a camel spider in Baltic amber was described, representing the second known specimen of fossil Solifugae in Baltic amber. Further on, the entire mitochondrial genome of Nothopuga sp. was sequenced for comparison with other solifuges and chelicerates in order to reveal changes in their gene order.
Effect of surgical intervention on the activation status of circulating monocytes and T-cells
(2009)
Major surgery causes alterations in immune function which results in immune suppression in post surgical patients. Deactivation of monocytes in these patients is characterised by the reduced ability of these cells to produce pro-inflammatory cytokines on stimulation with LPS in vitro and by markedly reduced HLA-DR expression. Immune suppression in patients with systemic inflammation has also been associated with a high level of apoptosis in both the circulating T and B cell populations. In addition post surgical T cells have a reduced capacity to proliferate ex vivo in response to co-ligation of the T cell receptor and CD-28. Considering these impairments of immune system, this study aimed to define the extent of immune modulation in both innate and adaptive system in a cohort of surgical patients. Measurment of the level of HLA-DR expression of monocytes in these patients showed a considerable change in monocyte phenotype in the immediate post operative period. In line with previous work, all patients showed a considerable reduction in monocytic surface HLA-DR expression which persisted for many hours and those who had post surgical septic complications showed the most severe reduction. Importantly, patients with minor surgical intervention also exhibited decreased HLA-DR expression. Gene expression analysis of monocyte in these patients showed the up-regulated transcripts of genes involved in extravasation and realignment of the cytoskeleton. Analysis of periperal T cell demonstrated a significant reduction in their number in the circulation and a sharp raise in the number of apoptotic T –cells in the immediate post surgical period. Microarray analysis of T cells from patients who developed sepsis and patients with an uneventful recovery within the post-operative period (3 days) showed a substantial reduction in the transcriptional activity of many genes in both groups. However, this down regulation of T cell transcriptional activity appears to be a rather broad and non specific effect since it is not restricted to particular functional pathways. Real time PCR analysis of both the CD4+ and CD8+ populations using selected down-regulated genes showed that the change in transcriptional profile is equally evident both in CD4+ and CD8+ T-cells. The cause of this transient immune depression following surgery remains to be established and it may represent an important enabling factor which contributes to the development of post surgical infections and inflammatory complications.
Age-related brain injuries including stroke, are a major cause of physical and mental disabilities. Therefore studying the basic mechanism underlying functional recovery after brain stroke in middle aged subjected it is of considerable clinical interest. Data from our lab and elsewhere indicate that, behaviorally, middle aged rats were more severely impaired by stroke than were young rats, and they also showed diminished functional recovery. Infarct volume did not differ significantly in young and middle aged animals, but critical differences were apparent in the cytological response to stroke, most notably an age-related acceleration of the establishment of the glial scar. The early infarct in older rats is associated with a premature accumulation of BrdU-positive microglia and astrocytes, persistence of activated oligodendrocytes, a high incidence of neuronal degeneration, and accelerated apoptosis. In middle aged rats, neuroepithelial-positive cells were rapidly incorporated into the glial scar, but these neuroepithelial-like cells did not make a significant contribution to neurogenesis in the infarcted cortex in young or middle aged animals. Stroke is accompanied by a strong inflammatory reaction in the brain. We hypothesized that a mild systemic inflammatory reaction as caused by periodontal disease prior to stroke onset, may exert a neuroprotective effect in a rat model of focal ischemia. To test this hypothesis, marginal periodontitis was induced in BB/LL Wistar rats for 3 weeks. Two weeks after periodontitis initiation, focal cerebral ischemia was produced by reversible occlusion of the right middle cerebral artery. After a survival time of 7 days after ischemia, rat brains were analyzed. In addition, markers of systemic inflammation were determined in a different group of laboratory animals at 14 days after the onset of periodontitis. We found that rats with a mild systemic inflammation had a significantly reduced infarct volume and a significant reduction in the number of brain macrophages in the infarcted area. Conclusions: The available evidence indicates that the middle aged brain has the capability to mount a cytoproliferative response to injury, but the timing of the cellular and genetic response to cerebral insult is deregulated in middle aged animals, thereby further compromising functional recovery. In addition we found that that mild systemic inflammation elicited prior to stroke onset may have a neuroprotective effect in rats by reducing the infarct volume and tissue destruction by brain macrophages.
Medulloblastoma is one of the most common malignant childhood brain tumors. Although advances in multimodal treatment have significantly improved the survival rate, the outcome of children is still very poor. Therefore, there is an urgent need to develop novel approaches that can increase survival and reduce long term side effects of patients. Histone deacetylase inhibitors (HDIs) have emerged as a promising new class of antineoplastic agents in cancer therapy. Among them, suberoylanilide hydroxamic acid (SAHA, vorinostat, Zolinza®) is a highly potential HDI which has been approved for treatment of cutaneous T-cell lymphoma and is currently used for treatment of various tumor cell types both in vivo and in vitro. However, only little information has been reported on the effects of SAHA on primary central nervous system (CNS) tumors including medulloblastoma. The DAOY cell line represents the most widely used model cell line for investigation of medulloblastoma. In a recent study, it was reported that SAHA induces apoptosis and cell cycle arrest of DAOY cells (Sonnemann et al., 2006). However, the molecular mechanisms underlying this antitumor activity are still not clear. Therefore, in this study, effects of SAHA on DAOY cells were analysed at the protein level by using both gel-based and gel-free proteomic approaches. A 2D proteome reference map of DAOY cells in pH range of 4-7 was created from control and 10 µM SAHA treated cells via a combined analysis using 2D electrophoresis and MALDI-TOF/TOF-MS. This reference map covers 1196 identified protein spots of more than 770 distinct proteins. This is the first report of a 2D proteome map of SAHA treated DAOY cells. Moreover, the number of covered proteins was increased with the aid of a 1D-RP-LC-ESI-MS/MS analysis. Both methods together gave rise to a total of over 1200 distinct protein species, which is the largest catalogue of proteins identified in DAOY cells so far. In SAHA treated cells, a series of proteins were found to be subjected to protein degradation after treatment with the drug, including mainly cytoskeleton proteins (e.g. beta-tubulin, beta/gamma-actin, vimentin, filamin interacting protein 1), heat shock protein HS90B and a component of the FACT chromosomal remodelling complex (SSRP1). Most of those proteins are known substrates for caspases. Interestingly, several of these protein degradations are reported as typical apoptotic events in brain cells such as fragmentations of lamin A/C, alpha-spectrin, myosin-9 and SSRP1. The 2D reference map was then used as an annotated database for further investigation of changes in protein expression and protein modification profiles of DAOY cells following SAHA treatment. By using the 2D-DIGE technique, SAHA was found to induce significant changes in protein levels of DAOY cells, especially at the concentration of 10 µM while considerably fewer changes in the protein pattern were observed after treatment with the lower dose of 2 µM. Quantitative analysis of total protein extracts using the 2D-DIGE technique (employing pH range of 4-7) and spectral counting (employing a 1D-RP-LC separation) resulted in the identification of 213 differentially expressed proteins after treatment with 10 µM SAHA. Most of the targeted proteins belong to the groups of cytoskeleton proteins (e.g. lamin B1, calreticulin, dynexin), heat shock proteins (e.g. HSP71, HSP7C, CH60, GRP78) and brain signal transductors (e.g. 14-3-3E, 14-3-3T, CRK, MARCS). Other proteins that changed in levels after SAHA treatment include proteins involved in chromatin remodelling (e.g. RUBV1, RUBV2), transcription regulation (e.g. YBOX, CBX5), redox regulation (e.g. TXND4, TXND5, BIEA), metabolism (e.g. G6PI, K6PP, LDHB) and RNA processing (HNRP K). In addition, cathepsin D, one of autophagic executors, was increased by SAHA treatment while different subunits of the 26S proteasome complex were decreased in levels after addition of SAHA. Interestingly, we found alterations of mitochondrial proteins indicating the perturbation of mitochondrial function. VDACs are pore forming proteins located on the outer mitochondrial membrane which is known to play an important role in the release of apoptogenic proteins such as cytochrome-c from mitochondria to cytoplasm and induction of apoptosis. In this study, VDAC1 and VDAC3 were found to be overexpressed after incubation with SAHA, which might lead to an extensive release of apoptogenic proteins. This result is consistent with the study of Sonnemann and co-workers showing that SAHA induced the mitochondrial apoptotic pathway of DAOY cells (Sonnemann et al., 2006). Furthermore, these results are also in agreement with the previously known antitumor activities of SAHA reported for other cancer cell lines, e.g. the up-regulation of heat shock proteins, prostaglandin synthase 3, ubiquinol cytochrome c reductase or the down-regulation of MARCS proteins. …………………
Discovery of novel Baeyer-Villiger monooxygenases and their application in organic synthesis.
(2009)
The application of BVMOs in kinetic resolution is a versatile alternative for the synthesis of optically pure esters. Within this thesis BVMOs proved to be highly active against a broad range of linear and aryl aliphatic ketones yielding a variety of enantiopure products. Among the beta-hydroxy ketones several CHMOs and BVMOPsfl showed the best results (E > 100), whereas the application of the latter enzyme also allowed access to the abnormal esters (regioisomeric excess > 40%). Interestingly, some enzymes showed a reduced activity and selectivity with a growing chain length of the ketone, suggesting that middle-chain ketones (C8-C10) might be preferred. Moreover, the production of optically pure 1,2-diols was observed (yields 8-50%), resulting from an in vivo hydrolysis of the 2-hydroxy alkyl acetates. Regarding the N-protected beta-amino ketones, results were different. While the majority of CHMOs catalyzed linear substrates showing high enantioselectivities (for CHMOBrevi1 and CHMOBrachy E > 100, c = 40-50%), BVMOPsfl did not convert nitrogen bearing linear ketones, although this might also be justified with the methylcarbamate protecting group. Interestingly, the number of BVMOs catalyzing oxidation of spatially more demanding linear branched beta-amino ketones was greatly reduced, indicating steric hindrance that was also combined with a decrease in selectivity. Similar to the observation for beta-hydroxy ketones, also the 2 amino alkyl acetates hydrolyzed furnishing 2-amino alcohols (yields 9-52%). Moreover, hydrolysis of the “abnormal“ esters allowed an alternative access to valuable native and non-native β-amino acids. In a two step process, using CDMO from R. ruber and CAL-B, it was possible to generate N-protected (+)-beta-leucine. During kinetic resolutions of aryl aliphatic ketones it was observed that the highest enantio¬selectivities could be achieved utilizing HAPMOJD1, HAPMOACB and PAMO, enzymes typically preferring aromatic substrates. Biotransformation with 3-phenyl-2-butanone revealed an E-value > 100 for HAPMOJD1 (S-selective). Nevertheless, also BVMOPsfl converted this sub¬strate (E = 43), and also CHMOAcineto and CPMO oxidized it, although selectivity was rather low (E < 5). Interestingly, BVMOKT2440 was the only examined enzyme showing R selectivity (E = 13). Additionally, increasing the scale and performing biotransformation in a baffled flask could increase enantioselectivity of BVMOPsfl from E = 43 to 82. The discovery of novel enzymes with diverse properties is still a main goal of the biotechnological industry. Within these studies, two BVMOs (BVMOKT2440 and HAPMOJD1) could be successfully amplified from genomic DNA using different PCR-methods. Then, expression in E. coli was optimized, revealing that the reduction of expression temperature, implementation of E. coli JM109 or RosettaTM (DE3), possessing the pRARE plasmid to facilitate translation of rare codons in the latter case, and/or co-expression of chaperones (pGro7: GroEL/ES-familiy) could increase the amount of soluble and active protein. Both enzymes were subjected to biocatalysis and it was found that BVMOKT2440 preferentially oxidized linear ketones, while HAPMOJD1 dominantly converted aryl aliphatic ketones. The latter enzyme could be purified by anion exchange and affinity chromatography allowing examination of kinetic parameters. Thereby, HAPMOJD1 displayed lowest KM-values for acetophenone derivatives bearing their substituent in para-position (KM < 320 µM). Moreover, also aldehydes and heteroaromatic compounds were oxidized and also sulfoxidation was observed. Interestingly it was found, that both BVMO genes are located in the direct neighborhood of a dehydrogenase and a hydrolase. This led to the suggestion that these enzymes may be metabolically connected in the degradation of their natural substrate.
Fluorocarbon containing capacitively coupled radio frequency (cc-rf) plasmas are widely used in technical applications and as model systems for fundamental investigations of complex plasmas. Absorption spectroscopy based on pulsed quantum cascade lasers (QCL) was applied in the mid-IR spectral range of 1269-1275 cm-1. Absolute densities of the precursor molecule CF4 and of the stable product C3F8 were measured with a time resolution of up to 1 ms in pulsed CF4/H2 asymmetrical cc-rf (13.56 MHz) discharges. For this purpose both the non-negligible temperature dependence of the absorption coefficients and the interference of the absorption features of CF4 and C3F8 had to be taken into account in the target spectral range. Therefore, at two different spectral positions composite absorption spectra were acquired under the same plasma conditions in order to discriminate between CF4 and C3F8 contributions. A total consumption of∼ 12 % was observed for CF4 during a 1 s plasma pulse, whereas C3F8 appeared to be produced mainly from amorphous fluorocarbon layers deposited at the reactor walls. A gas temperature increase by ∼ 100 K in the plasma pulse was estimated from the measurements. Additionally, not yet identified unresolved absorption (potentially from the excited CF4 molecule) was found during the àon-phase'.
Application of quantum cascade laser absorption spectroscopy to studies of fluorocarbon molecules
(2009)
The recent advent of quantum cascade lasers (QCLs) enables room-temperature mid-infrared spectrometer operation which is particularly favourable for industrial process monitoring and control, i.e. the detection of transient and stable molecular species. Conversely, fluorocarbon containing radio-frequency discharges are of special interest for plasma etching and deposition as well as for fundamental studies on gas phase and plasma surface reactions. The application of QCL absorption spectroscopy to such low pressure plasmas is typically hampered by non-linear effects connected with the pulsed mode of the lasers. Nevertheless, adequate calibration can eliminate such effects, especially in the case of complex spectra where single line parameters are not available. In order to facilitate measurements in fluorocarbon plasmas, studies on complex spectra of CF4 and C3F8 at 7.86 μm (1269 – 1275 cm-1) under low pressure conditions have been performed. The intra-pulse mode, i.e. pulses of up to 300 ns, was applied yielding highly resolved spectral scans of ∼ 1 cm-1 coverage. Effective absorption cross sections were determined and their temperature dependence was studied in the relevant range up to 400 K and found to be non-negligible.