Open Access

The aquaculture industry has been consistently and successfully growing over the years, supplying over 50% of the fish humans consume. A large part of this success is due to the implementation of vaccination, which is by far the most reliable prophylactic method in large-scale fish farming. Nonetheless, although recent fish vaccines have greatly contributed to the development and sustainability of the aquaculture industry, they not always offer sufficient protection to provide acceptable survival rates when infectious diseases outbreaks occur. Therefore, infectious diseases and effective vaccines still constitute major problems for aquaculture. Different practical aspects and biological factors of fish have also contributed to the unsuccessful outcome of fish vaccines. To date, many of the most effective vaccines for fish are injectable, and their formulation includes aluminum or oil emulsion adjuvants. Both facts constitute a major issue for animal welfare due to the stress and side effects they trigger. Great strides have been made in innovative technologies for fish vaccines. However, as of today, they are not available on the market. Thus, improvements in vaccine formulations and delivery routes remain an open topic and leads the to-do list of science with the aquaculture of the future. Vaccination provides immunity against a determined pathogen, and this is inherent to the immune system. Therefore, thorough knowledge about the fish immune system and how it is influenced by internal and external factors will certainly support rational vaccine design. Thereby, the immune responses triggered by a vaccine can be exhaustively characterized, and the formulations improved in case it is needed. Hence, the goal of this PhD thesis, is to provide knowledge to improve fish vaccination, both in its formulation and in its efficacy, aiming to promote the rational design of fish vaccines. Additionally, this work proposes a holistic view of fish, where the physiology and culture conditions of the fish are the starting points for the development and application of vaccines. Thus, concepts and considerations for rational vaccine design specific for fish are presented here. Article I of this thesis offers a comprehensive review on the current situation in Chile, but also worldwide aquaculture and the challenges it must face in the future. Namely, recurrent pathogenic outbreaks and sub-optimal levels of protection due to inefficient vaccination. This article established an open and flexible ground upon which to reflect on how and what to improve in fish vaccines, leading the efforts towards rational vaccine design. In Article II, we investigated whether the current most used vaccination route, intraperitoneal, can be improved by reducing the side effects of adjuvants, replacing them with in the vaccine formulations with Poly-(D,L-lactic-co-glycolic) acid (PLGA) microparticles, that serve simultaneously as vaccine vehicle and adjuvants. Article III summarizes the scientific literature about what is known about the teleost thymus. From this, it became clear how external factors such as photoperiod and seasonality can modulate this primary lymphatic organ, and probably, immune responses. These are essential factors to consider if effective and protective vaccines are needed in species highly influenced by the environment such as fish. As discussed in Article III, fish are poikilotherm animals, highly sensitive to environmental factors like light. In Article IV, we reported for the first time, light generates daily rhythms in cells’ circulation and gene expression, entraining the trout immune response. Therefore, “when” (time of the day) we stimulate fish matters in order to get optimal immune responses. Article V provides valuable knowledge about what happens with fish immune responses, against a bacterial agent, under constant cues like light/dark cycles and temperature. Once again, “when” we stimulate fish (season), influences the fish immune status and therefore, their immune responses. Finally, Article VI reports, for the first time, leukocytes extracted from fins of trout directly respond to a parasitic infection. This article supports the idea that further research must be done on fish mucosal surfaces, since they are key to stimulating/vaccinating fish, as they are a natural entry route for pathogens and modulate the immune responses mounted. Overall, the information provided by these articles is highly relevant for the aquaculture industry. Firstly, because the vaccine platform based on PLGA microparticles is promising for the future of fish vaccination, harmful adjuvants can be avoided, while still providing enhanced stimulation thanks to the timed-released capacity of the particles. Additionally, they offer the possibility to adapt them to in-feed vaccine pellets, which is the ideal delivery route for fish. Secondly, accurate vaccination protocols can be established; vaccination should be done during daytime, and preferably during the morning, where the physiological status of fish provide optimal conditions for induction of an ultimately protective immune response after vaccination. Furthermore, vaccination should be done during warm months, spring, or summertime, as apparently fish have free-run internal clocks that negatively modulate adaptive immune responses during wintertime. In summary, the present thesis provides a novel concept for vaccination of aquacultured species based on new data for rational vaccine design, with optimal application procedures based on the optimal timing (season and daytime), reduced stress by oral application and considerations about improving “first-line defenses” by vaccination via mucosal surfaces of gut or skin.

Laccases are regarded as versatile green biocatalysts, and recent scientific research has focused on improving their redox potential for broader industrial and environmental applications. The density functional theory (DFT) quantum mechanics approach, sufficiently rigorous and efficient for the calculation of electronic structures, is conducted to better comprehend the connection between the redox potential and the atomic structural feature of laccases. According to the crystal structure of wild type laccase CueO and its variant, a truncated miniature cluster model method was established in this research. On the basic of thermodynamic cycle, the overall Gibbs free energy variations before and after the one-electron reduction were calculated. It turned out that the trends of redox potentials to increase after variant predicted by the theoretical calculations correlated well with those obtained by experiments, thereby validating the feasibility of this cluster model method for simulating the redox potentials of laccases.

Bloodstream infections caused by Streptococcus pneumoniae induce strong inflammatory and procoagulant cellular responses and affect the endothelial barrier of the vascular system. Bacterial virulence determinants, such as the cytotoxic pore-forming pneumolysin, increase the endothelial barrier permeability by inducing cell apoptosis and cell damage. As life-threatening consequences, disseminated intravascular coagulation followed by consumption coagulopathy and low blood pressure is described. With the aim to decipher the role of pneumolysin in endothelial damage and leakage of the vascular barrier in more detail, we established a chamber-separation cell migration assay (CSMA) used to illustrate endothelial wound healing upon bacterial infections. We used chambered inlets for cell cultivation, which, after removal, provide a cell-free area of 500 μm in diameter as a defined gap in primary endothelial cell layers. During the process of wound healing, the size of the cell-free area is decreasing due to cell migration and proliferation, which we quantitatively determined by microscopic live cell monitoring. In addition, differential immunofluorescence staining combined with confocal microscopy was used to morphologically characterize the effect of bacterial attachment on cell migration and the velocity of gap closure. In all assays, the presence of wild-type pneumococci significantly inhibited endothelial gap closure. Remarkably, even in the presence of pneumolysin-deficient pneumococci, cell migration was significantly retarded. Moreover, the inhibitory effect of pneumococci on the proportion of cell proliferation versus cell migration within the process of endothelial gap closure was assessed by implementation of a fluorescence-conjugated nucleoside analogon. We further combined the endothelial CSMA with a microfluidic pump system, which for the first time enabled the microscopic visualization and monitoring of endothelial gap closure in the presence of circulating bacteria at defined vascular shear stress values for up to 48 h. In accordance with our CSMA results under static conditions, the gap remained cell free in the presence of circulating pneumococci in flow. Hence, our combined endothelial cultivation technique represents a complex in vitro system, which mimics the vascular physiology as close as possible by providing essential parameters of the blood flow to gain new insights into the effect of pneumococcal infection on endothelial barrier integrity in flow.

Background: Klebsiella pneumoniae causes severe diseases including sepsis, pneumonia and wound infections and is differentiated into hypervirulent (hvKp) and classic (cKp) pathotypes. hvKp isolates are characterized clinically by invasive and multiple site infection and phenotypically in particular through hypermucoviscosity and increased siderophore production, enabled by the presence of the respective virulence genes, which are partly carried on plasmids. Methods: Here, we analyzed two K. pneumoniae isolates of a human patient that caused severe multiple site infection. By applying both genomic and phenotypic experiments and combining basic science with clinical approaches, we aimed at characterizing the clinical background as well as the two isolates in-depth. This also included bioinformatics analysis of a chromosomal virulence plasmid integration event. Results: Our genomic analysis revealed that the two isolates were clonal and belonged to sequence type 420, which is not only the first description of this K. pneumoniae subtype in Germany but also suggests belonging to the hvKp pathotype. The latter was supported by the clinical appearance and our phenotypic findings revealing increased siderophore production and hypermucoviscosity similar to an archetypical, hypervirulent K. pneumoniae strain. In addition, our in-depth bioinformatics analysis suggested the insertion of a hypervirulence plasmid in the bacterial chromosome, mediated by a new IS5 family sub-group IS903 insertion sequence designated ISKpn74. Conclusion: Our study contributes not only to the understanding of hvKp and the association between hypervirulence and clinical outcomes but reveals the chromosomal integration of a virulence plasmid, which might lead to tremendous public health implications.

Four aerobic bacteria with bacteriolytic capabilities were isolated from the brackish water site Strait Uzynaral of Lake Balkhash in Kazakhstan. The morphology and physiology of the bacterial isolates have subsequently been analyzed. Using matrix assisted laser desorption ionization-time of flight mass spectrum and partial 16S rRNA gene sequence analyses, three of the isolates have been identified as Pseudomonas veronii and one as Paenibacillus apiarius. We determined the capability of both species to lyse pre-grown cells of the Gram-negative strains Pseudomonas putida SBUG 24 and Escherichia coli SBUG 13 as well as the Gram-positive strains Micrococcus luteus SBUG 16 and Arthrobacter citreus SBUG 321 on solid media. The bacteriolysis process was analyzed by creating growth curves and electron micrographs of co-cultures with the bacteriolytic isolates and the lysis sensitive strain Arthrobacter citreus SBUG 321 in nutrient-poor liquid media. One metabolite of Paenibacillus apiarius was isolated and structurally characterized by various chemical structure determination methods. It is a novel antibiotic substance.

The main goal of this contribution was to determine the effect of predation of the often abundant to dominant doliolid Dolioletta gegenbauri (Tunicata, Thaliacea) on the abundance of co-occurring planktonic copepods by feeding on their eggs. Previous oceanographic investigations revealed that doliolids had ingested eggs of small calanoid copepods. The ecological significance of such feeding could not be quantified completely because the environmental abundance of such eggs was not known. In this study, the eggs and nauplii of the neritic calanoid Paracalanus quasimodo (Crustacea, Copepoda) were offered to gonozooids and phorozooids of D. gegenbauri with a 6–6.5 mm length together with three species of phytoplankton; i.e., simulating diet conditions on the shelf. We hypothesized that copepod eggs of a similar size as food particles would be readily ingested whereas small nauplii, which could escape, would hardly be eaten by the doliolids. Our results revealed that doliolids have the potential to control small calanoids by ingesting their eggs at high rates but not their nauplii or later stages. Late copepodid stages and adults of co-occurring calanoid species could cause less mortality because they prey less on such eggs than doliolids of a similar weight. However, certain abundant omnivorous calanoid species with pronounced perception and/or capture abilities can prey successfully on the nauplii of small calanoids.

Multidrug-resistant (MDR) Enterobacterales, including extended-spectrum β-lactamase (ESBL)-producing Escherichia coli and Klebsiella pneumoniae, not only emerge in healthcare settings but also in other habitats, such as livestock and wildlife. The spread of these pathogens, which often combine resistance with high-level virulence, is a growing problem, as infections have become increasingly difficult to treat. Here, we investigated the occurrence of ESBL-producing E. coli and K. pneumoniae in fecal samples from two black-headed gull colonies breeding on two nature conservation islands in Western Pomerania, Germany. In addition to cloacal samples from adult birds (n = 211) and their nestlings (n = 99) during the 2021 breeding season, collective fecal samples (n = 29) were obtained. All samples were screened for ESBL producers, which were then subjected to whole-genome sequencing. We found a total of 12 ESBL-producing E. coli and K. pneumoniae consisting of 11 E. coli and 1 K. pneumoniae, and including the international high-risk E. coli sequence types (ST)131, ST38, and ST58. Eight of the investigated strains had a MDR genotype and carried a large repertoire of virulence-associated genes, including the pap operon, which is important for urinary tract infections. In addition, we identified many genes associated with adherence, biofilm formation, iron uptake, and toxin production. Finally, our analysis revealed the close phylogenetic relationship of ST38 strains with genomes originating from human sources, underlining their zoonotic and pathogenic character. This study highlights the importance of the One Health approach, and thus the interdependence between human and animal health and their surrounding environment.

The full genome of a Methanomassiliicoccales strain, U3.2.1, was obtained from enrichment cultures of percolation fen peat soil under methanogenic conditions, with methanol and hydrogen as the electron acceptor and donor, respectively. Metagenomic assembly of combined long-read and short-read sequences resulted in a 1.51-Mbp circular genome.

Re-establishment of submerged macrophytes and especially charophyte vegetation is a common aim in lake management. If revegetation does not happen spontaneously, transplantations may be a suitable option. Only rarely have transplantations been used as a tool to support threatened submerged macrophytes and, to a much lesser extent, charophytes. Such actions have to consider species-specific life strategies. K-strategists mainly inhabit permanent habitats, are perennial, have low fertility and poor dispersal ability, but are strong competitors and often form dense vegetation. R-strategists are annual species, inhabit shallow water and/or temporary habitats, and are richly fertile. They disperse easily but are weak competitors. While K-strategists easily can be planted as green biomass taken from another site, rare R-strategists often must be reproduced in cultures before they can be planted on-site. In Sweden, several charophyte species are extremely rare and fail to (re)establish, though apparently suitable habitats are available. Limited dispersal and/or lack of diaspore reservoirs are probable explanations. Transplantations are planned to secure the occurrences of these species in the country. This contribution reviews the knowledge on life forms, dispersal, establishment, and transplantations of submerged macrophytes with focus on charophytes and gives recommendations for the Swedish project.