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Staphylococcus (S.) aureus nimmt dem Menschen gegenüber eine ambivalente Rolle ein, da er zum einen häufiger Kommensale ist, aber auch zum Pathogen werden kann. Zu den bedeutendsten Gegnern von S. aureus zählen die neutrophilen Granulozyten. Sie haben eine kurze Lebensspanne und weisen hochspezialisierte Zelltodstrategien, wie Apoptose oder NETose auf. Auffälligerweise besitzen S. aureus-Isolate, die Furunkulose auslösen, überproportional häufig das Gen für das Panton-Valentine-Leukozidin (PVL), welches hochspezifisch humane neutrophile Granulozyten lysiert. Zu den Interaktionen zwischen S. aureus und Neutrophilen sind noch viele Fragen ungeklärt. Die Ziele dieser Arbeit waren deshalb (1) die Charakterisierung der Wirkung von S. aureus auf das Zelltodverhalten von Neutrophilen und (2) der Vergleich dieser Mechanismen bei kommensalen S. aureus-Isolaten und Isolaten von Patienten mit chronisch rekurrenter Furunkulose. Dazu wurde der Zelltod von Neutrophilen mit einem DNA-Freisetzungstest (Sytox-Assay) und mittels Immunfluoreszenzfärbung analysiert. Auffällig waren dabei folgende Beobachtungen: (1) Hohe Konzentrationen der S. aureus-Kulturüberstände führten zur Nekrose der Neutrophilen. In sublytischen Konzentrationen bewirkten Überstände der stationären Wachstumsphase dagegen eine Verzögerung der natürlichen Apoptose der Neutrophilen in Kultur, deren Fähigkeit zur proinflammatorischen Aktivierung dabei erhalten blieb. Es ist vorstellbar, dass sich S. aureus, von dem inzwischen bekannt wurde, dass er auch intrazellulär persistieren kann, auf diese Weise in den Neutrophilen eine Überlebensnische schafft. Bei Stimulation mit lebenden Bakterienzellen konnten konzentrationsabhängig Nekrose, Apoptose und geringfügig NETose der Neutrophilen beobachtet werden. (2) Der Vergleich von S. aureus-Isolaten aus nasaler Besiedlung und Furunkuloseinfektion zeigte, dass bakterielle Überstände von Furunkulose-Isolaten, die die PVL-kodierenden Gene besaßen, eine deutlich stärkere Lyse der Neutrophilen verursachten. Dieser Effekt war nur dann zu beobachten, wenn die Bakterien tatsächlich PVL bildeten, wozu sie nur in besonders reichhaltigen Medien in der Lage waren. Dies ist ein starker Hinweis darauf, dass der Zelltod durch PVL verursacht wurde. Mit lebenden Bakterien konnten zwischen beiden Gruppen keine Unterschiede in der Zelltodinduktion der Neutrophilen festgestellt werden. Die Ergebnisse dieser Arbeit zeigen, dass S. aureus neutrophile Granulozyten auf verschiedene Weise beeinflussen kann: Neben der Induktion von Zelltod können die Bakterien auch Substanzen freisetzen, die die Lebensspanne der Abwehrzellen verlängern. Außerdem stützen die Befunde das Konzept einer zentralen Rolle für PVL bei Haut- und Weichteilinfektionen durch S. aureus, das bisher vor allem auf epidemiologischen Befunden basierte.
Metabolomics is the scientific study of metabolites of an organism, cell, or tissue. Metabolomics makes use of different analytical approaches. In this thesis, an analytical platform consisting of proton nuclear magnetic resonance spectroscopy (1H-NMR), gas chromatography-mass spectrometry (GC-MS, EI/quadrupol) and liquid chromatography-mass spectrometry (LC-MS, ESI/TOF) was used for metabolite analysis. Due to the high physicochemical diversity of metabolites, the usage of different analytics is profitable. Focusing on metabolome analysis of microorganisms, the development of viable protocols was prerequisite. To ensure metabolome samples of best possible quality, particularly the sampling procedure has to be optimized for each microorganism to be analyzed individually. In microbial metabolomics, the energy charge value is a commonly used parameter to assure high sample quality (Atkinson 1968). The pathogenic bacterium Staphylococcus aureus and the biotechnical relevant bacterium Bacillus subtilis were main target of research. The sampling protocol development “A protocol for the investigation of the intracellular Staphylococcus aureus metabolome” (Meyer et al. 2010) and “Methodological approaches to help unravel the intracellular metabolome of Bacillus subtilis”s (Meyer et al. 2013) confirmed the need for development and verification of viable protocols. It was observed, that minor differences in the sampling procedure can cause major differences in sample quality. Using the validated analytical platform and the optimized protocols, we were able to investigate the metabolome of S. aureus and B. subtilis under different conditions. Investigations of the pathogenic bacterium S. aureus are of major interest due to its increasing resistance to antibiotics. Methicillin (multi)-resistant S. aureus (MRSA) strains are responsible for several difficult-to-treat infections. The cell wall of bacteria is the target of an array of antibiotics, like the beta-lactam antibiotics. Our study “A metabolomic view of Staphylococcus aureus and Its Ser/Thr kinase and phosphatase deletion mutants: Involvement in cell wall biosynthesis” (Liebeke et al. 2010) revealed the influence of the serine-threonine kinase on cell wall biosynthesis of S. aureus. LC-MS based metabolome data uncovered prevalent wall teichoic acid precursors in the serine-threonine kinase deletion mutant (ΔpknB), and predominantly peptidoglycan precursors in the phosphatase deletion mutant (Δstp), compared to the S. aureus wild type strain 8325. This uncovered a so far undescribed importance of the serine-threonine kinase on the cell wall metabolism and provides new insights into its regulation. The nasopharynx and the human skin are often the ecological niche of S. aureus. Furthermore, S. aureus exists outside its host, for example on catheters. Depending on its niche, S. aureus is exposed to several stress factors and limitation conditions, such as carbon source limitation and starvation. To cope with the latter, a number of regulatory cellular processes take place. In “Life and death of proteins: a case study of glucose-starved Staphylococcus aureus” (Michalik et al. 2012) protein degradation during glucose starvation was monitored. An intriguing observation was that proteins involved in branch chain amino acid biosynthesis and purine nucleotide biosynthesis were distinctly down-regulated in the clpP mutant. This lead to the assumption of a stronger repression of CodY-dependent genes in the clpP mutant. Intracellular metabolome data revealed higher GTP concentrations in the clpP mutant. This may explain the higher CodY activity and thereby stronger repression of CodY-dependent genes in the clpP mutant. Since different S. aureus strains are known to colonize different niches, global carbon source (glucose, glucose 6-phosphate, glycerol, lactate, lactose and a mixture of all) and carbon source limitation dependent exo-metabolome analyses were performed using three different S. aureus strains (HG001: laboratory strain, EN493: human endocarditis isolate and RF122: bovine mastitis strain). The most apparent observation was that RF122 can utilize lactose best, while EN493 and HG001 are better at utilizing glucose-6-phosphate compared to the bovine RF122 strain. Bacillus subtilis is an extensively studied Gram-positive and non-pathogenic bacterium. In the functional genomics approach “System-wide temporal proteomics profiling in glucose-starved Bacillus subtilis” (Otto et al. 2010) growth phase dependent changes in the proteome, transcriptome and extracellular metabolome were monitored. By mass spectrometric analysis of five different cellular subfractions, ~ 52% of the predicted proteins could be identified. To confirm and complete the proteomic data transcriptome and extracellular metabolome analyses were performed. The extracellular metabolome data ensured that cells were glucose-starved and revealed growth phase dependent metabolic footprints. In “A time resolved metabolomics study: The influence of different carbon sources during growth and starvation of Bacillus subtilis” ((Meyer et al. 2013) submitted) four different compounded cultivation media were investigated as only glucose, glucose and malate, glucose and fumarate and glucose and citrate as carbon source. It could be shown, that B. subtilis is able to maintain an intracellular metabolite homeostasis independent of the available carbon source. On the other hand, in the exo-metabolome, carbon source as well as growth phase dependent differences were detected. Furthermore, in this study the influence of ATP and GTP on the activation of the alternative RNA polymerase sigma factor B (σB) was discussed. The concentration of ATP and GTP decreased for all conditions, as cells entered the stationary growth phase. While cell growth on solely glucose and during growth on glucose and additional malate, the ATP and GTP concentrations increased slightly when the consumption of the second carbon source was initiated. Only under these conditions, a considerable σB activity increase during the transition from exponential to stationary growth phase was observed. Furthermore, the developed sampling protocol for metabolome analysis of B. subtilis enabled us to be part of a “multi omics” system biological approach to study the physiological adjustment of B. subtilis to cope with osmotic stress under chemostat conditions.