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Background/Aims: To develop a clinically relevant immunocompetent murine model to study pancreatic cancer using two different syngeneic pancreatic cancer cell lines and to assess MRI for its applicability in this model. Methods: Two cell lines, 6606PDA and Panc02, were employed for the experiments. Cell proliferation and migration were monitored in vitro. Matrigel™ was tested for its role in tumor induction. Tumor cell growth was assessed after orthotopic injection of tumor cells into the pancreatic head of C57/BL6 mice by MRI and histology. Results: Proliferation and migration of Panc02 were significantly faster than those of 6606PDA. Matrigel did not affect tumor growth/migration but prevented tumor cell spread after injection thus avoiding undesired peritoneal tumor growth. MRI could reliably monitor longitudinal tumor growth in both cell lines: Panc02 had a more irregular finger-like growth, and 6606PDA grew more spherically. Both tumors showed local invasiveness. Histologically, Panc02 showed a sarcoma-like undifferentiated growth pattern, whereas 6606PDA displayed a moderately differentiated glandular tumor growth. Panc02 mice had a significantly shorter (28 days) survival than 6606PDA mice (50 days). Conclusion: This model closely mimics human pancreatic cancer. MRI was invaluable for longitudinal monitoring of tumor growth thus reducing the number of mice required. Employing two different cell lines, this model can be used for various treatment and imaging studies.
Computational chemical physics can give important input to astrophysical modelling and other fields of physics, where molecular properties are of importance. Understanding of spectroscopic and reactive behaviour is crucial for many systems of astrophysical interests like stars, interstellar medium and comets. Especially stellar atmospheres are of interest, because the complex physics of stars are not yet completely understood. Stars are in an unstable balance of gravitation and radiation pressure and the atmospheric dynamics have been subject of extensive modelling. Complete and accurate spectroscopic information of the atoms and molecules in these atmospheres is necessary for this attempt. In addition, the only information we have about astrophysical systems is light which is emitted or absorbed by particles in these media. This is not only true for astrophysics. In plasma physics sometimes the usage of invasive diagnostics, like Langmuir probes, is not wanted because they disturb the system. In these cases some information of the system can be regained by passively measuring infrared spectra of the plasma or by active induction of electronic transition like the laser-induced fluorescence method. Another remote sensing application is the measurement of the atmospheric composition on earth. Here, larger particles in the atmosphere as well as greenhouse gases are of current interest. Unfortunately, the experimental spectroscopic data, which is needed for the understanding and interpretation of the measured spectra, is often incomplete. This gap can be, to some extend, filled by computational chemical physics. The aim of this work was to investigate the capabilities and limitations of ab initio based potential energy surfaces for spectroscopic and reactive studies and to apply these methods to problems of rovibrational and rovibronic spectroscopy and reaction dynamics. The choice of ab initio methods and the potential fitting methods is critical for the computational chemical physics, as all further quantities directly depend on their quality. In this work modified versions of the Braams polynomial potential energy surface were used. A high level coupled cluster ab initio method was used to build potentials for a series of small hydrocarbons. Hydrocarbons can be found almost everywhere on earth and in the universe. They exist in laboratory plasmas, stellar and planetary atmospheres and interstellar gases. In all these cases, light emitted or absorbed by the molecules is an important diagnostics of the system. The potential constructed in this work partly included a cluster expansion, which adds reactant configuration spaces to the fits. This could not be done for CH_3 and higher hydrocarbons, because of the limitations of the Coupled Cluster ab initio method, which is well suited for the potential wells, but not for the dissociation regions. The examples of methyl and methane show how the potentials can be used for rovibrational spectroscopy. Results of radiation transport simulations illustrate the importance of as complete-as-possible line lists for radiation transport calculations.\\ The rovibronic spectroscopy of diatomic molecules is another important aspect for the stellar atmospheric modelling. Metal hydrides and oxides add opacity to the atmosphere in the visible light and ultraviolet frequency regions, as well as do the hydrocarbons in the infrared one. In addition the spectra of metal hydrides/oxides can be used to gather information about metal and their isotope abundances. They are used as markers for the conditions in the atmospheres of stars. In this work a new code was developed, that efficiently calculates bound-bound transitions between electronic states and bound-continuum cross sections for diatomic molecules. It also offers an adequate treatment of quasi-bound rovibrational states. One important representative of the diatoms is magnesium hydride, MgH. Before this work, line lists and photodissociation cross section were available involving the three lowest doublet states of MgH. In this work new potential energy curves were calculated and adapted to updated experimental data. This causes changes in the relative energies between the electronic states and therefore shifts in the line lists. These are important, because accurate line positions are needed for the identification of spectral lines. In addition two further electronic states were included in the calculations. This expands the spectral range of MgH into the near ultraviolet region. Radiation transport models showed significant absorption by MgH from the newly added electronic states. A second usage of the diatomic potential energy curves are photodissociation cross sections. As interstellar environments are chemically active, such data is necessary for a complete picture of the ongoing processes. The photodissociation cross sections of MgH reveal a stronger dependence of the underlying potential than the bound-bound lines. In the case of MgH the cross sections are rather weak, besides occasional resonance lines which can be several orders of magnitude stronger. As mentioned, not only spectroscopic, but also reactive behaviour of molecules is important in astrophysics. A current problem connected with this is the abundance of CH^+ in interstellar clouds. Its measured abundances do not fit the predictions from theoretical models. In addition Gerlich and co-workers recently measured low temperature H + CH^+ -> C^+ + H_2 reaction rates, which diverge from the theoretical picture and which could not be explained. In this work a reactive potential energy surface was built for the CH_2^+ system, which was then used to perform extensive calculations with quasi-classical trajectory and quantum scattering methods. It was found out, that the potentials used in previous works are not accurate enough to allow low temperature calculations. Results from these potentials must be taken with care. Furthermore, the results from the new potential energy surface indicate significantly reduced reaction rates compared to previous numerical studies. This is in agreement with the new results of Gerlich and co-workers. Nevertheless, the large error bars in the low temperature range for experimental as well as numerical results strongly suggest refined methods to be developed for both, before a final conclusion can be made. This work demonstrated the possibility of modern computational chemical physics to supply consistent data for spectroscopy and reaction dynamics. These are necessary and important inputs for fields like astrophysics, plasma physics and chemistry.
Background: Alcohol consumption accounts for a high burden of disease. The general population of West Pomerania has been characterized as a population at risk with a high prevalence of behavioural risk factors such as alcohol risk drinking. This is reflected by the high proportion of patients being admitted to general hospitals due to alcohol-attributable diseases. The aims of the present dissertation were (a) to analyze dose-response relations between volume of alcohol drinking and the risk of diseases with different alcohol-attributable fractions (AAF) in general hospital inpatients (study 1); (b) to assess motivation to change drinking behaviour and motivation to seek help for alcohol problems during their hospital stay as well as changes in motivation to change drinking behaviour, motivation to seek help and changes in daily alcohol consumption across time according to diseases with different AAFs (study 2); and (c) to investigate the association of fatty liver disease (FLD) with blood pressure and hypertension in a general population sample and to test for the specific contribution of alcohol consumption to this association (study 3). Methods: For studies 1 and 2, data from 'Early Intervention at General Hospitals', a randomized controlled trial to test the effectiveness of brief intervention for alcohol problem drinking in general hospitals, were used. Study 1 comprised data from 846 inpatients, study 2 comprised data from 294 inpatients aged 18 to 64 years with alcohol problem drinking and alcohol-attributable diseases from four general hospitals in West Pomerania. Hospital diagnoses were classified according to their AAF: (1) diseases wholly attributable to alcohol consumption by definition (AAF=1), (2) diseases partially attributable to alcohol consumption (AAF<1), and (3) diseases with no relation to alcohol consumption or where alcohol consumption has been found to be a protective factor (AAF=0). Study 3 encompassed data from the 'Study of Health in Pomerania', a general population sample of 3191 adults aged 20-79 years. FLD was defined using ultrasound in combination with increased serum alanine aminotransferase levels. Results: Analyses showed that 46.8% of the general hospital inpatients had a disease attributable to alcohol consumption. There was a dose-response relationship between volume of alcohol drinking and the risk of diseases with different AAFs. Inpatients consuming >120 g and inpatients consuming 61-120 g of pure alcohol per day revealed significantly higher odds for diseases with AAF=1 compared to inpatients consuming 31-60 g of pure alcohol per day with odds ratios (OR) of 6.3 (95% CI 3.6-11.3) and 2.9 (95% CI 1.6-5.1), respectively. Regarding diseases with AAF<1, inpatients consuming >120 g of pure alcohol per day had significantly higher odds compared to inpatients consuming 31-60 g of pure alcohol per day (OR 2.0, CI 1.2-3.4). Analyses on motivation to change drinking behaviour and on motivation to seek help at hospitalization revealed that motivation to change drinking behaviour was higher among inpatients with alcohol-attributable diseases than among inpatients without alcohol-attributable diseases (p<.001). Among inpatients with AAF=1, motivation to seek help was higher than among inpatients with AAF<1 and AAF=0 (p<.001). While motivation to change drinking behaviour remained stable within one year after hospitalization in all three AAF groups, motivation to seek help decreased in this time period. The volume of alcohol consumed decreased in all three AAF groups within one year after hospitalization. Data from the general population study revealed that FLD was associated with blood pressure and hypertension at baseline and at five-year examination follow-up. For example, the chance of hypertension at both time points was threefold higher in individuals with FLD (OR 2.8, CI 1.3-6.2; OR 3.1, CI 1.7-5.8, respectively) compared to individuals without FLD. Analyses further revealed that the association of FLD with blood pressure and hypertension was independent of alcohol consumption. Conclusion: The results of the present dissertation provide relevant implications for public health. In view of the high proportion of general hospital inpatients with alcohol-attributable diseases, a screening procedure for problem drinking is needed. Furthermore, appropriate interventions considering the inpatient’s motivational level have to be implemented. The concept of AAFs to classify disease conditions according to their causal relationship with alcohol consumption might be a tool to detect inpatients with problem drinking. The results regarding FLD and its association with blood pressure and hypertension demonstrate that it is important to pay attention to alcohol-attributable diseases in the general population and that alcohol-attributable diseases are associated with subsequent serious sequelae. The results of the present work further indicate that the concept to distinguish between alcoholic and non-alcoholic origin of FLD might be obsolete and should be replaced by a concept that regards FLD as a multifactorial disease condition.
In this thesis, it was the subject to build a setup to study the interaction of clusters with intense laser light. A magnetron sputter cluster ion source was built to create metal clusters for the planned investigations. Furthermore, a linear Paul trap setup was built in order to allow the investigation of the mentioned interaction at one specific cluster size. The whole apparatus was characterized and first experiments were performed.
Aim: The efficacy of antimicrobial compounds included in wound dressings has been determined using the quantitative suspension test according to EN 13727 before. However, as suspension tests are not an accurate reflection of the conditions under which wound antiseptics are used, it was investigated if a disc carrier test would yield results simulating practical conditions on wound surfaces. A silver-leaching foam wound dressing was used for evaluation of the disc carrier test method. Method: The disc carriers consisted of circular stainless-steel discs measuring 2 cm in diameter and 1.5 mm in thickness, complying with the requirements of EN 10088-2. Carriers were contaminated with Staphylococcus aureus, methicillin-resistant S. aureus or Pseudomonas aeruginosa, respectively, together with an artificial wound secretion and left to dry at room temperature for 30 min. The wound dressings being tested were placed on the discs for the length of the exposure time, and after neutralization by thioglycolate in phosphate-buffered saline the number of surviving test organisms was then counted. The logarithmic reduction factor was calculated from the difference between the initial inoculum and the number of recovered test organisms. Results: The disc carrier test allowed determination of an antimicrobial efficacy in a realistic setting. It also imposed more stringent requirements on efficacy over time than the quantitative suspension test. The silver foam wound dressing showed a time-dependent antimicrobial efficacy. After 24-hour application time, the reduction factors against S. aureus, P. aeruginosa and the methicillin-resistant S. aureus were 1.9 ± 0.15, 2.1 ± 0.14 and 3.1 ± 0.18, respectively. Conclusion: The disc carrier test was a useful method for testing the antimicrobial efficacy of a foam silver dressing. The antimicrobial dressing exhibited an antimicrobial effect after 3 h and achieved a reduction >2 log against the tested bacterial strains in the presence of a simulated wound secretion after 24 h.
Main drivers for biodiversity loss in terrestrial ecosystems are changes in land use, climate change, enhanced nitrogen deposition and biotic exchange (invasive species). These drivers also affect dry, nutrient-poor open anthropo-zoogenic inland and coastal heathlands which often harbor a high biodiversity. To counteract biodiversity loss in coastal ecosystems, a basic step is the assessment of the various threats. Therefore it is important to select suitable model organisms for analyses of biodiversity dynamics. In this thesis the three arthropod groups Orthoptera (Ensifera and Caelifera), carabid beetles (Coleoptera: Carabidae) and spiders (Araneae) were studied, as they are very useful indicators. Besides sampling of the three arthropod groups vegetation and microclimate parameters were recorded. The studies were done between 2008 and 2010 in the coastal heathland on the Baltic island of Hiddensee, Germany. The main aim of the thesis was to analyze the impact of three drivers of heathland biodiversity loss (succession, grass encroachment, moss invasion) on the selected indicator arthropod groups. Based on this multi-level and -species approach, implications for the conservation of coastal heathlands are given. The results show that successional processes and grass encroachment have strong impact on species richness and abundance, species composition and functional groups, as well as life-history traits and functional diversity of the arthropod groups. Main findings were: Orthoptera species richness was highest in the intermediate stages (heath encroached by grasses and heath with shrubs) because of higher habitat heterogeneity and higher food supply (grasses). Opposed to that, species richness of ground-dwelling carabid beetles and spiders did not differ among the five successional stages, which contradicts the ‘habitat heterogeneity hypothesis’. In contrast to species richness, functional diversity differed among successional stages. The concept of functional diversity – which integrates species life-history trait data – therefore might be particularly suitable for biodiversity research, while the explanatory power of species richness alone might not be sufficient. The species compositions of all three taxa changed remarkably along the coastal heathland gradient indicating a high species turnover. In particular, open, dynamic habitats (‘grey dunes’ and ‘dwarf-shrub heath’) could be separated. Here, several specialized, xerothermic and threatened species occurred due to the extreme habitat conditions, but are displaced during grass and shrub encroachment. On a smaller spatial scale, the invasion of Campylopus introflexus alters habitat conditions in grey dunes and therefore affects carabid beetle and spider species and the dominant Orthoptera species Myrmeleotettix maculatus. Species richness of carabid beetles and spiders, and the abundance of adult M. maculatus grasshoppers were reduced. Species compositions of carabids and spiders changed remarkably with a loss of several species. These negative impacts could be explained by the vegetation structure of the moss which is unsuitable for web-building spiders or large carabid beetles, and by reduced germination of higher plants and therefore reduced food supply for M. maculatus and phytophagous carabid species. Within the open coastal heathland, the mosaic of grey dunes and adjacent dwarf-shrubs is important since many species perform a habitat change during their development and, besides the scarcely vegetated, thermally benefited grey dunes, need denser vegetation of adjacent dwarf-shrubs for shelter, as song posts, or for foraging. As grey dunes harbor a high abundance and species richness of threatened and specialized, mainly xerothermic and geobiont species and are important as oviposition and nymphal habitat, they are regarded as a keystone habitat within the coastal heathland. Besides these ecological studies, two studies focused on the method of pitfall trapping. It could have been shown, that pitfall trapping might be a useful sampling method for Orthoptera in open habitats. The other study demonstrated that sampling interval has a strong influence on the capture efficiency of several arthropod groups (‘digging-in effect’). Conservation practices should aim at maintaining a heterogeneous heathland mosaic with open grey dunes and Calluna stands, in addition to scattered grassy and shrub-encroached heath for the survival of species-rich heathland arthropod assemblages with a high proportion of specialized and threatened species.
In the search for bioactive compounds, 32 fungal strains were isolated from Indonesian marine habitats. Ethyl acetate extracts of their culture broth were tested for cytotoxic activity against a urinary bladder carcinoma cell line and for antifungal and antibacterial activities against fish and human pathogenic bacteria as well as against plant and human pathogenic fungi. Bioassay-guided fractionation led to the isolation of bioactive compounds. Altogether 14 compounds were isolated and further elucidated. The compounds were obtained from the ethyl acetate and dichloromethane extracts of six fungal strains. They included 9 polyketides, 2 terpenes, 1 alkaloid and 2 till now undefined structures.
The dissertation aims at developing means to integrate conservation and development in biosphere reserves in Madagascar. Despite a multitude of concepts such as UNESCO biosphere reserves, Integrated Conservation and Development Projects and community-based natural resource management, gaps between conservation and development remain to exist. In a qualitative case study in Mananara-Nord and Sahamalaza Iles-Radama Biosphere Reserves in Madagascar data was collected on biosphere reserve management, local use of natural resources and socio-cultural aspects that influence natural resource use. Furthermore, natural values local people associate with the forest were investigated. Analysis revealed that management capacities constitute a limiting factor in biosphere reserve management. Collaboration between management, local people and international organisations fosters the achievement of both conservation and development. However, collaboration is only possible if (i) clear rules are formulated and (ii) partners have a vision in common. Based on the theory of social capital, newly introduced and locally existent rules/institutions having an influence on the use of natural resource were categorized in bonding, linking and bridging social capital. Furthermore, the perception of natural values was classified in instrumental and non-instrumental values and assigned to ecosystem services identifying the importance of nature for human well-being. With the capabilities approach Amartya Sen defined human well-being as the achievement of those capabilities a person considers valuable. This includes aspects that assure livelihoods on the one hand and aspects that are conducive to well-being on the other, thus both being relevant for development. In the dissertation capabilities are based on both instrumental and non-instrumental natural values and consequently offer an opportunity to demonstrate and characterise the relationship between nature and human well-being. Social and natural values provide orientation for a biosphere reserve management. The category bonding social capital (social values) describes local socio-cultural aspects in communities and their importance for collaborative processes. Natural values provide the management with guiding principles to foster nature conservation and to integrate locally existent capabilities. Supporting and furthering these capabilities enables the development of new capabilities of all concerned persons. The dissertation demonstrates various possibilities to build bridges between (i) nature conservation and development, (ii) natural and social sciences, (iii) formal regulations and local socio-cultural aspects and (iv) diverse actors. Implementation of a social monitoring is recommended together with local stewards and Malagasy students to collect information about the perception of natural and social values and use them as guiding principles for biosphere reserves. Collaboration with national and international scientific institutions can foster this process.
Staphylococcus aureus is a pathogenic bacterium infecting the human host. It’s multifaced adaptation to various environmental conditions is mediated by a tight regulation of the virulence factors influencing the host’s immune system. In this thesis two regulators of gene expression were analysed: (i) the global influence of the two-component system SaePQRS and (ii) the regulation of superantigen gene expression by the alternative sigma factor σB. At the outset of this thesis, single target genes induced by SaeRS were known (hla, hlb, cap5, fnbA, coa). In order to get a general idea of the Sae-regulon, the influence of SaePQRS on gene-expression was analysed in two strain backgrounds by proteomics and transcriptomics aproaches. Recapitulatory, expression of at least 18 secreted and two covalently cell-wall bound proteins was decreased following inactivation of the Sae-system. Sae-dependently expressed were, amongst others, well decribed virulence factors like the y-hemolysins HlgA, HlgB, HlgC, LukM and LukF, the innate immune system modulating proteins Efb, CHIPS and SCIN-B as well as the enterotoxin SEB. SaeR acts as an activator of its target genes. Some proteins were detected in increased amounts in the extracellular proteome of the Sae-deficient strain. However, these changes did not occur at the transcriptional level. The expression of virulence factors is determined by other global regulators. No influence of SaePQRS on the transcription of five substancial regulators, namely the Agr-system and its effector molecule RNAIII, the alternative sigma factor σB, the two-component system ArlRS and the DNA-binding protein SarA, could be shown. In the second part of this thesis the issue was broached to the regulation of gene-expression of a subgroup of virulence factors, the superantigens (SAgs) of S. aureus by SaePQRS and σB. In contrast to their well described molecule structure and function, the regulation of their gene expression was largely unknown. Six different S. aureus strains (two laboratory strains and four clinical isolates) encoding one to seven SAg-genes each, were used for analysis of a total of twelve SAgs regarding their transcription and mitogenic activity. The transcriptional units were characterized using Northern-Blotting. The expression of SAgs could be correlated to the respective growth phase. While egc-SAgs were expressed mainly at low optical densities, seb was induced during late growth phase. In contrast, the transcription of sea, seh, sek, tst and sep remained constant and growth-phase independent. The transcriptional dataset was verified using T-cell proliferation assays. The expression of seh, tst and the egc-operon was dependent on σB. A potential σB-dependent promotor could be identified preceeding seo, the first gene of the egc-operon. In contrast, the expression of seb was increased in sigB-deficient background. This might be due to indirect effects. Expression of seb required SaePQRS. Transcriptional datasets were verified by Immuno-Blotting and T-cell-proliferation assays. In conclusion, the same mutation in sigB but in different strain backgrounds could result in opposite phenotypes with respect to their mitogenic activity. Besides well characterized virulence factors, some secreted proteins with so far unknown function belong to the Sae-regulon. Given that the influence of SaePQRS was restricted to virulence factors and induced especially modulators of the innate immune system, it can be assumed, that these proteins potentially play a role in virulence of S. aureus. In the third part of this thesis, one of these potential new virulence factors, namely SACOL0908, was analysed in detail. In cooperation with the group of Prof. Stehle, Tübingen, the crystal structure was solved. The protein folding of SACOL0908 is new with only minor similarities to described protein structures. Recombinantly expressed SACOL0908 binds to granulocytes. These cells belong to the innate immune system, incorporate bacteria by phagocytosis and kill them. The receptor for SACOL0908 on the surface of granulocytes could not be identified using immunoprecipitation, antibody-blocking assays and functional assays in cooperation with the group of Prof. Peschel, Tübingen. The gene encoding SACOL0908 was deleted in two S. aureus strain backgrounds (COL and Newman). These mutants are currently in use to characterize their phenotype in mouse-infection studies.
Currently, there are no generally accepted definitions for wounds at risk of infection. In clinical practice, too many chronic wounds are regarded as being at risk of infection, and therefore many topical antimicrobials – in terms of frequency and duration of use – are applied to wounds. Based on expert discussion and current knowledge, a clinical assessment score was developed. The objective of this wounds at risk (W.A.R.) score is to allow decision-making on the indication for the use of antiseptics on the basis of polihexanide. The proposed clinical classification of W.A.R. shall facilitate the decision for wound antisepsis and allow an appropriate general treatment regimen with the focus on the prevention of wound infection. The W.A.R. score is based on a clinically oriented risk assessment using concrete patient circumstances. The indication for the use of antiseptics results from the addition of differently weighted risk causes, for which points are assigned. Antimicrobial treatment is justified in the case of 3 or more points.
The exact qualitative and quantitative analysis of wound healing processes is a decisive prerequisite for optimizing wound care and for therapy control. Transepidermal water loss (TEWL) measurements are considered to be the standard procedure for assessing the progress of epidermal wound healing. The damage to the stratum corneum correlates with an increased loss of water through the skin barrier. This method is highly susceptible to failure by environmental factors, in particular by temperature and moisture. This study was aimed at comparing TEWL measurements and in vivo laser scanning microscopy (LSM) for the characterization of the epidermal wound healing process. LSM is a high-resolution in vivo method permitting to analyze the kinetics and dynamics of wound healing at a cellular level. While the TEWL values for the individual volunteers showed a wide scattering, LSM permitted the wound healing process to be clearly characterized at the cellular level. However, a comparison between the two methods was very difficult, because the results provided by LSM were images and not numerical. Therefore, a scoring system was set up which evaluates the stages of wound healing. Thus, the healing process could be numerically described. This method is independent of any environmental factors. Providing morphologically qualitative and numerically quantitative analyses of the wound healing process and being far less vulnerable to failure, LSM is advantageous over TEWL.
District hospitals are the only solution to guarantee basic health care including life-saving surgeries and hospitalisations in rural SSA areas. Neither regional nor national hospitals, financially and geographically out of reach for the majority of the population, nor rural health care centres, mostly staffed with a nurse only, can cover these tasks adequately. However, only little research exists on care giving processes, cost and efficiency of district hospitals in SSA. The general problem in health economics is that limited resources should be used in order to maximise health effects. This dissertation evaluates the actual treatment pathways and their average provider’s cost per patient for four different diagnoses at Nouna district hospital in Burkina Faso. A total of 95 patient records was analysed in detail and discussed with the health personnel in charge. Cost information for the year 2005 was taken from the well-established provider cost information system. Cost were broken down to the different sequences of the treatment pathway and summed up at the end. Average provider’s cost for paediatric Malaria were U$ 6.71 for outpatients, US$ 60.59 for inpatients with anaemia and US$ 75.11 for inpatients with neurological affection. Average provider’s cost for treating hypertension were US$ 67.94 per year. Average cost for hernia cure were US$ 146.85 under local anaesthesia, US$ 153.08 under spinal anaesthesia and US$ 169.78 under general anaesthesia. Average provider’s cost for Caesarean sections were US$ 140.15 under spinal anaesthesia and US$ 180.41 under general anaesthesia. This means that cost per patient are comparable to or even lower than provider’s cost found for other SSA setting in the literature. Cost would decrease between 20% (a hypertensive outpatient) and 46% for Malaria with neurological affection as complication, if utilisation rates rose from actually 20 to 80%. Patients paid between 35 and 94% of total provider’s cost in form of user fees. If fees would not change and the utilisation rate increased to 80%, cost-recovery for the considered diseases would then be between 63 and 117%. Although this would not allow the hospital to break even in its current configuration, the cost-recovery rate would be considerably higher, especially when taking into account that a full cost analysis was done including all investment cost. The introduction of clinical pathways based on the actual treatment pathways is suggested to improve process structure and documentation and to standardise the treatment according to national and international guidelines.
Background: Cardiovascular diseases are the leading cause of death worldwide. Subclinical alterations of the cardiovascular system, such as increased exercise blood pressure or an endothelial dysfunction confer a higher risk of manifest cardiovascular diseases and incident events. Detecting associations between circulating markers of the endocrine-metabolic system and the subclinical cardiovascular phenotypes could be useful to better understand cardiovascular disease progression and to improve risk prediction for manifest cardiovascular diseases. Methods: The associations between (a) serum thyroid-stimulating hormone and increased exercise blood pressure, (b) serum hemoglobin A1c and endothelial dysfunction as well as (c) serum insulin-like growth factor I and endothelial dysfunction were studied using cross-sectional data from around 1400 subjects aged 25 to 85 years collected during the 5-year follow-up of the population-based Study of Health in Pomerania (SHIP-1). Increased exercise blood pressure was defined as a value above the sex- and age-specific 80th percentile measured at the 100 W stage of a symptom-limited bicycle ergometry test. Endothelial dysfunction was defined as an impaired flow-mediated dilation measured as a continuous decrease or below the median of sex-specific distribution. Non-fasting blood samples were drawn from the cubital vein in the supine position. Results: The odds for increased systolic exercise blood pressure (odds ratio 1.24, 95% confidence interval 0.88; 1.76) and diastolic exercise blood pressure (odds ratio 0.98, 95% confidence interval 0.70; 1.39) as well as for exercise-induced increase of systolic and diastolic blood pressure were not significantly different between subjects with high and low serum thyroid-stimulating hormone levels within the reference range. In women without current use of antihypertensive medication, increasing serum hemoglobin A1c levels were associated with decreasing flow-mediated dilation levels (ß = -1.17, 95% confidence interval -2.03; -0.30). Such an association was not found in men. In men, logistic regression analysis revealed an odds ratio of 1.27 (95% confidence interval 1.07; 1.51) for decreased flow-mediated dilation for each decrement of serum insulin-like growth factor I standard deviation. In women, no significant association between serum insulin-like growth factor I levels and flow-mediated dilation was observed (odds ratio 0.88, 95% confidence interval 0.74; 1.05). Conclusions: Based on the presented results it is concluded that (a) serum thyroid-stimulating hormone levels are not associated with exercise blood pressure in the general population, (b) higher serum hemoglobin A1c levels in non-diabetic subjects are inversely associated with flow-mediated dilation in women without antihypertensive medication, but not in men, and (c) lower serum insulin-like growth factor I levels are associated with impaired endothelial function in men, but not in women. Therefore the metabolic marker hemoglobin A1c and the endocrine marker insulin-like growth factor I might be markers facilitating the identification of subjects at high risk of subclinical cardiovascular alterations.
Chronic pancreatitis has long been thought to be mainly associated with immoderate alcohol consumption. The observation that only ∼10% of heavy drinkers develop chronic pancreatitis not only suggests that other environmental factors, such as tobacco smoke, are potent additional risk factors, but also that the genetic component of pancreatitis is more common than previously presumed. Either disease-causing or protective traits have been indentified for mutations in different trypsinogen genes, the gene for the trypsin inhibitor SPINK1, chymotrypsinogen C, and the cystic fibrosis transmembane conductance regulator (CFTR). Other factors that have been proposed to contribute to pancreatitis are obesity, diets high in animal protein and fat, as well as antioxidant deficiencies. For the development of pancreatic cancer, preexisting chronic pancreatitis, more prominently hereditary pancreatitis, is a risk factor. The data on environmental risk factors for pancreatic cancer are, with the notable exception of tobacco smoke, either sparse, unconfirmed or controversial. Obesity appears to increase the risk of pancreatic cancer in the West but not in Japan. Diets high in processed or red meat, diets low in fruits and vegetables, phytochemicals such as lycopene and flavonols, have been proposed and refuted as risk or protective factors in different trials. The best established and single most important risk factor for cancer as well as pancreatitis and the one to clearly avoid is tobacco smoke.
This thesis aims at bridging the gap of deficient understanding of effective buffer zone management. The overall research goal of the thesis is to evaluate buffer zone effectiveness and to identify factors influencing effective buffer zone management in forest biosphere reserves. To address the multi-facetted issue of buffer zone effectiveness an integrative research design was applied. To answer the raised research questions a combination of social science (quantitative and qualitative approaches) and natural science (remote sensing) was chosen. To gain global insights into buffer zone management (research question 1) the quantitative approach of social science research was chosen. As part of a global telephone survey of BR management conducted by the research project in which the thesis was embedded, BR managers were asked to evaluate different management aspects. Between July and December 2006, managers from 225 BRs in 79 countries were interviewed, which corresponds to an overall response rate of 42 %. Answers were statistically analyzed using SPSS 17.0. To obtain detailed information of factors influencing buffer zone management (research question 2) the qualitative social science research approach was applied. A case study was conducted in the Lore Lindu Biosphere Reserve, Sulawesi, Indonesia between March and May 2008. Following the snowball sampling approach 47 semi-structured interviews and seven group discussions were carried out representing the local, sub-national, and national level associated with the BR management. These interviews and discussions provide important insights into the institutional dimensions and their interaction within the context of BR management including e.g. implementation of rules and the distribution of responsibilities for buffer zone management. Interviews were conducted in the national language Bahasa Indonesia, fully recorded, and subsequently transcribed and translated into English. Analysis was carried out with ATLAS.ti to specify categories and to formulate theorems. To evaluate buffer zone effectiveness in terms of reducing deforestation in the core area of Lore Lindu Biosphere Reserve (research question 1), satellite image analysis was performed using a GIS. A time series of LANDSAT scenes from 1972, 1983, 1999, 2002, and 2007 was used to classify homogeneous areas of forest cover to ultimately detect deforestation. Deforestation rate was computed for the periods before and after management establishment in 1998. The combination of all three research methods provided important insights into buffer zone management of BRs. Thus, based on these findings, recommendations to improve buffer zone management (research question 3) could be drawn. Overall, the evaluation of buffer zones depicts their importance for BR management effectiveness. Analysis revealed buffer zone effectiveness as important success factor, while it explicitly depends on both the implementation of the BR concept at the national level and coordination of stakeholders on the local level. As more and more PAs create buffer zones to integrate the local people, they may face similar problems. The case study from Lore Lindu exhibited important preconditions for successful buffer zone management. From a methodological perspective the thesis calls for the need of integrated research approaches across disciplines to adequately assess both buffer zone and PA effectiveness. Generally, it is recommended to pay special attention to pre-Seville BRs in the future, since most of these BRs still lack the three zone scheme. Analysis of the case study area revealed particular weaknesses in implementing central elements for effective BR management, such as the four goals of the Seville Strategy, even 15 years after inauguration. Thus, the thesis shows that not only the quantity of PAs but also the quality of its management and thus effectiveness is an important indicator for global conservation targets. Finally, it can be summarized that the idea of establishing buffer zones within BRs and PAs in general, is the right way forward to enhance PA effectiveness and to achieve global reduction of biodiversity loss. Integrating the people living within and adjacent to PAs, must be given more attention in the future. Establishment of buffer zones, where this integration and cooperation is a necessity, should be the central conservation measure, not only within BRs but also within PAs in general.
Background: Computational tools for the investigation of transcriptional regulation, in particular of transcription factor binding sites (TFBS), in evolutionary context are developed. Existing sequence based tools prediction such binding sites do not consider their actual functionality, although it is known that besides the base sequence many other aspects are relevant for binding and for the effects of that binding. In particular in Eukaryotes a perfectly matching sequence motif is neither necessary nor sufficient for a functional transcription factor binding site. Published work in the field of transcriptional regulation frequently focus on the prediction of putative transcription factor binding sites based on sequence similarity to known binding sites. Furthermore, among the related software, only a small number implements visualization of the evolution of transcription factor binding sites or the integration of other regulation related data. The interface of many tools is made for computer scientists, although the actual interpretation of their outcome needs profound biological background knowledge. Results and Discussion: The tool presented in this thesis, "ReXSpecies" is a web application. Therefore, it is ready to use for the end user without installation providing a graphical user interface. Besides extensive automation of analyses of transcriptional regulation (the only necessary input are the genomic coordinates of a regulatory region), new techniques to visualize the evolution of transcription factor binding sites were developed. Furthermore, an interface to genome browsers was implemented to enable scientists to comprehensively analyze their regulatory regions with respect to other regulation relevant data. ReXSpecies contains a novel algorithm that searches for evolutionary conserved patterns of transcription factor binding sites, which could imply functionality. Such patterns were verified using some known transcription factor binding sites of genes involved in pluripotency. In the appendix, efficiency and correctness of the used algorithm are discussed. Furthermore, a novel algorithm to color phylogenetic trees intuitively is presented. In the thesis, new possibilities to render evolutionary conserved sets of transcription factor binding sites are developed. The thesis also discusses the evolutionary conservation of regulation and its context dependency. An important source of errors in the analysis of regulatory regions using comparative genetics is probably to find and to align homologous regulatory regions. Some alternatives to using sequence similarity alone are discussed. Outlook: Other possibilities to find (functional) homologous regulatory regions (besides whole-genome-alignments currently used) are BLAST searches, local alignments, homology databases and alignment-free approaches. Using one ore more of these alternatives could reduce the number of artifacts by reduction of the number of regions that are erroneously declared homologous. To achieve more robust predictions of transcription, the author suggests to use other regulation related data besides sequence data only. Therefore, the use and extension of existing tools, in particular of systems biology, is proposed.
Chromosomal abnormalities, like deletions, amplifications, inversions or translocations, are recurrent features in haematological malignancies. However, the precise molecular breakpoints are frequently not determined. Here we describe a rapid analysis of genetic imbalances combining fine tiling comparative genomic hybridization (FT-CGH) and ligation-mediated PCR (LM-PCR). We clarified an inv(14)(q11q32) in a case of T cell acute lymphoblastic leukaemia with a breakpoint in the TRA/D in 68% of cells detected by fluorescence in situ hybridization. FT-CGH showed several mono- and biallelic losses within TRA/D. LM-PCR disclosed a TRA/D rearrangement on one allele. The other allele revealed an inv(14)(q11q32), joining TRDD2 at 21,977,000 of 14q11 together with the IGH locus at 105,948,000 and 3′-sequence of TRAC at 22,092,000 joined together with IGHV4–61 at 106,166,000. This sensitive approach can unravel complex chromosomal abnormalities in patient samples with a limited amount of aberrant cells and may lead to better diagnostic and therapeutic options.
Background: It has not been investigated whether there are associations between urinary iodine (UI) excretion measurements some years apart, nor whether such an association remains after adjustment for nutritional habits. The aim of the present study was to investigate the relation between iodine-creatinine ratio (ICR) at two measuring points 5 years apart. Methods: Data from 2,659 individuals from the Study of Health in Pomerania were analyzed. Analysis of covariance and Poisson regressions were used to associate baseline with follow-up ICR. Results: Baseline ICR was associated with follow-up ICR. Particularly, baseline ICR >300 µg/g was related to an ICR >300 µg/g at follow-up (relative risk, RR: 2.20; p < 0.001). The association was stronger in males (RR: 2.64; p < 0.001) than in females (RR: 1.64; p = 0.007). In contrast, baseline ICR <100 µg/g was only associated with an ICR <100 µg/g at follow-up in males when considering unadjusted ICR. Conclusions: We detected only a weak correlation with respect to low ICR. Studies assessing iodine status in a population should take into account that an individual with a low UI excretion in one measurement is not necessarily permanently iodine deficient. On the other hand, current high ICR could have been predicted by high ICR 5 years ago.
The present work provides new insight concerning histidine phosphorylation in proteins, which is an essential regulatory posttranslational modification. To study histidine phosphorylation, a newly developed NMR approach, the HNP experiment, is presented in this thesis. The HNP experiment provides specific experimental evidence of phosphorylated histidines in proteins. It allows for the determination of the regiochemistry of phosphohistidines on the basis of three individual peak patterns for distinguishing all three phosphohistidines i.e. 1- and 3-phosphohistidine and 1,3-diphosphohistidine. This novel NMR approach allows the investigation of histidine phosphorylation in proteins under physiological conditions without resorting to chemical shift comparisons, reference compounds, or radioactively labelled phosphate. In this thesis, histidine phosphorylation in the regulatory domains PRDI and PRDII of the Bacillus subtilis antiterminator protein GlcT was intensely studied. GlcT is a transcription factor, which regulates the phosphotransferase system (PTS) by modulating the expression level of PTS-enzymes (Enzyme I, HPr, Enzyme II) on a transcriptional level. Upon the phosphorylation of conserved histidines in PRDI and PRDII, the function of GlcT is regulated through its aggregation state. In this thesis, it is shown that histidines in both PRDs are primarily phosphorylated at their N(Epsilon-2), forming 3-phosphohistidine. In addition, we found, by newly optimized mass spectrometry conditions, that both PRDs are dominantly onefold phosphorylated. By using tandem mass spectrometry to study PRDI, we identified histidine 170, which is the second of two conserved histidines (His 111 and His 170), as the phosphorylation site. In this thesis, it is also shown through comprehensive mutational studies that both conserved histidines (His 218 and His 279) in PRDII can be individually phosphorylated. This is in good agreement with mass spectrometry results that indicated an additional twofold phosphorylation in PRDII. This can be explained as follows: an intra-domain phosphate transfer between both conserved histidines in PRDII might be involved in the phosphorylation reaction, finally leading to a mainly onefold phosphorylated PRDII at one of the two conserved histidines. This minor twofold phosphorylation has also been found in PRDI. However, the specific peak pattern in the HNP-spectra of PRDI strongly suggest that this additional phosphorylation originates from a 1,3-diphosphohistidine, most likely at histidine 170. Furthermore, for the first time the existence of 1,3-diphosphohistidine in a protein was found. We also show that the phosphorylation of PRDI can be achieved in the absence of Enzyme II which is in contrast to the literature. Shown by analytical gel filtration, the monomeric aggregation state of PRDI obtained upon Enzyme II-free phosphorylation is identical to the monomeric aggregation state which was proposed for the Enzyme II-dependent phosphorylation of GlcT. As shown in this thesis, the combined results of HNP-NMR, mass spectrometry and analytical gel filtration deepen our understanding of regulatory histidine phosphorylation in the individual PRDI and PRDII domains of the Bacillus sub- tilis GlcT. I anticipate that this approach will be applicable to study histidine phosphorylations in other phosphoproteins.