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There is multiple evidence that emotionally arousing events are preferentially processed, and better remembered than neutral events. In the present dissertation I investigated whether those strong emotional memories are affected by acute and chronic stress. Moreover, I was interested in whether already established emotional memories can be changed by behavioral intervention. According to the modulation hypothesis, emotionally arousing events promote attention and memory processes via noradrenergic and glucocorticoid actions. Recent models suggest that stress hormones differentially impact mnemonic processing, namely encoding, (re-) consolidation and memory retrieval, depending on timing and duration of the stressor relative to the learning experience. Acute stress around the time of encoding has been found to enhance memory, whereas chronic stress has been associated with memory impairments. Furthermore, consolidated memories are not resistant to modifications. Following reactivation, memories can turn into an unstable state and undergo a process called reconsolidated in order to persist. During this vulnerable state, memories are prone to modification, for instance by pharmacological blockade or interference learning. Here, the modulation of newly formed emotional and neutral memories as well as existing emotional and neutral memories was investigated in a well-established picture viewing and recognition memory paradigm using behavioral and neurophysiological measures (event-related potential, ERPs). More elaborative processing of emotional, relative to neutral stimuli has been related to the late positive potential (LPP). During encoding of emotional and neutral pictures, enhanced LPPs (starting at about 400 ms after stimulus onset) are usually observed for emotionally arousing relative to neutral pictures, indicating preferential attention allocation and processing. During recognition, correctly recognized old items evoke larger ERP amplitudes than correctly identified new items. This difference, the ERP old/new effect, was used to measure mnemonic processing during retrieval. The ERP old/new effect over centro-parietal sensor sites (400-800 ms) has been associated with recollection processes, and is enhanced for emotional, compared to neutral materials. Three studies are presented, that investigated 1) the influence of acute stress prior to encoding on long-term memory and its neural correlates, 2) the impact of chronic stress on encoding and memory, and 3) the influence of interference on already established memories (reconsolidation), always contrasting emotionally arousing and neutral scenes. Study 1 investigated subsequent recognition memory after encoding following acute stress using a socially evaluated cold pressure test, while study 2 tested the influence of chronic stress investigating breast cancer survivors about two years after cancer treatment. In study 3, one day after encoding, reconsolidation of the reactivated picture memory was targeted with an interfering learning task. In all three studies, recognition memory was tested one week later. High-density electroencephalograms (EEGs; 257 electrodes) were recorded to measure brain potentials. The results showed, in line with previous research, that emotionally arousing scenes were preferentially processed, as indicated by larger LPPs, and were better remembered than neutral scenes, as indicated by enhanced memory performance and larger ERP old/new differences. Experiencing acute stress prior to encoding enhanced the centro-parietal ERP old/new effect for emotionally arousing pictures at recognition, corroborating that acute stress facilitates memory for emotional scenes (Study 1). In contrast, attenuated LPPs for unpleasant pictures and impaired memory performance for arousing pictures were observed in breast cancer survivors (Study 2), indicating altered attention to emotion and subsequent emotional memory storage in chronically stressed individuals. When memory reactivation was followed by an interfering learning task, recognition memory and ERP old/new differences were attenuated for emotionally arousing scenes, selectively, showing the possibility that emotional memories might be modulated by behavioral interventions (Study 3). The results of all three studies are discussed and integrated into a model of memory modulation by stress and interference. The results highlight the importance of understanding the role of emotional arousal in the processes of memory formation, retrieval and reconsolidation. Moreover, shedding light on the differential effects of acute and chronic stress, interference and their possible interactions might help to prevent and even modify impairing memories that are one of the major concerns in stress- and fear-related mental disorders.
The aim of the study was to develop and evaluate the reliability and agreement of new computer planimetric method for measurement and assessment of plaque on all types of removable dental prostheses RPDs. The instrument (new method) was tested by evaluating the efficacy of the rotating needles device in cleaning specific parts of RPD. From a database containing 780 images, which were taken in a standardized method for 65 RDPs for 49 participants, 55 images were selected randomly for image analysis. Adobe Photoshop software was used according to a standard operating procedure (SOP) by a main examiner two times in different sessions, and 1 time by 3 other examiners. In order to estimate the intra- and inter-examiner reliability, intraclass correlation coefficients ICC(2,1) was used. Three parameters were used to estimate agreement: standard error of measurement (SEM), smallest detectable change at 95% confidence level (SDC95%), and limits of agreement (LoA) according to Bland¨CAltman method. In the database, only 34 subjects were found with double crown retained removable denture and veneer over the secondary crown. 49x2 (before x after) images for 34 RDPs went under image analyses to calculate POP before and after cleaning the RDPs with the rotating needle device. Data were analysed using Wilcoxon signed-rank test. In all steps of image analysis, both intra-examiner and inter- examiner reliability were excellent with ICC(2,1) values > 0.85 at 95% confidence level. Intra- and inter-examiner values for both, SEM and SDC95% were ¡Ü 6% and ¡Ü17% respectively. The Bland¨CAltman analysis revealed a satisfactory level of agreement. POP is significantly more on the veneer than on the base(B-O), P <0.05. The rotating needles device is effective in cleaning the veneer and base(B-O), P <0.05 with absolute effect size 0.62. No statistical significance was detected in the effectiveness of the rotating needles device between base(B-O) and veneer. This study showed an excellent inter- and intra-examiner reproducibility, satisfactory level of examiners agreement, and acceptable measurement error of the new computer planimetric method . Furthermore, the method can be used with all types of RDPs. The rotating needles device can significantly reduce plaque on the double crown retained removable denture. The Computerized Planimetric Method (CPM) is more suitable for clinical researches because of its objectivity, reliability, high level of standardization, and the ability to detect and quantify small changes in plaque. Extra attention should be given to the veneer over the secondary crown as they are a potential part for RDP plaque accumulation.
The overarching goal of this work was to develop a biosensor based on functional nucleic acids. The biosensor should be modular, such that by exchange of the recognition unit, tailored biosensors could be created, allowing detecting a variety of analytes on demand. In the context of the cooperation with a company, initially, TNFalpha was chosen as an analyte. In a previous work, it was tried to build a modular aptazyme for TNFalpha that was based on four aptamers that were developed by SELEX. Here, these aptamers were investigated more closely by different methods (SPR, QCM). In the present work, it was proven beyond doubt that this attempt was not feasible. The aptamers were not able to bind the biologically active form of TNFalpha. An even more interesting finding was that a common tool to immobilize molecules to investigate their interactions with a binding partner, namely the streptavidin-biotin interaction, can strongly influence the result of the assay and causing false-positive results. Afterwards, it was decided to continue the work with a DNAzyme and modular approach was strictly refrained. It was tried to build aptazymes for TNFa or creatinine by in vitro selection, which failed. Most likely, the crucial factors were the ligands itself and the high demand on in vitro selection to select two functionalities (aptamer and catalytic activity) in parallel. This was the reason, to develop a new and a different method with streptavidin as a model analyte. The new strategy was to combine in vitro selection and rational design. The 17E-DNAzyme was chosen as catalytically active module. In preparation of the in vitro selection work, its properties were analyzed. An oligo-based inhibitor of the 17E-DNAzyme was rationally designed and its functionality was experimentally evaluated. Then, a library was designed which contained the 17E-DNAzyme, a randomized domain, and the inhibitor and its functionality was experimentally proven. The in vitro selection for the aptamer and the catalytic function were separated in two steps where the substrate strand was introduced in the second step. The knowledge about in vitro selection procedures, which was gained in the first trials with TNFalpha and creatinine was applied and could be substantially broadened. The crucial factors for the success of this process were identified. Most important steps are the amplification steps between the rounds and the in vitro selection pressure. The template concentration in the PCR has to be very low; the selection pressure has to be high. However, in fact, the exact quantity of "low" and "high" is difficult to determine exactly, it has to be individually evaluated for every amplification step, and this makes in vitro selection a method that requires a lot of experimental skills, optimization procedures, and experience. An EMSA was established and performed to qualitatively prove the affinity of the library for streptavidin in the first step of the in vitro selection method. For the second step, the in vitro selection of the catalytic function, considerable effort was done, but the in vitro selection did not succeed. Using the Biacore, the dissociation constant of the pool, which was applied in the second step of in vitro selection, was determined to be KD = 38 nM. This is very low, and by sequencing the pool it was found that the sequence variability was too low. The sequences share a cramp-like stem-loop structure, which hold the DNAzyme in an inactive conformation. This work presents valuable results for the development of biosensors based on nucleic acids, applying in vitro selection and rational design. Aptamers for streptavidin were selected. The library, which was used for this in vitro selection was structurally constrained. This obviously, represented an exceptionally good starting point for the in vitro selection. In this work, a lot of information about the development of in vitro selection systems was gained. Important work was done on establishing a click chemistry-based immobilization strategy. This work is going to fundamentally facilitate a new in vitro selection approach based on this immobilization strategy.
Coastal and marginal seas – like the Baltic Sea – serve as natural reaction sites for the turnover and accumulation of land-derived inputs. The main location for the modification and deposition of the introduced material is, in most cases, not the water mass, but the sediment. Its key function as central reactor in the interaction between land and sea has so far been insufficiently studied and assessed. This study was part of the interdisciplinary SECOS project that aimed to identify and evaluate the service functions of sediments in German coastal seas in the context of human use with a focus on the Baltic Sea. One of its goals was to assess sediment functions related to the intermediate storage or final sink of imported material like nutrients and contaminants, and quantify their inventory as well as their mass accumulation rates on multi-decadal to multi-centennial time scales. For that, a detailed examination of the natural and anthropogenic processes that interfere with sediment accumulation in the south-western Baltic Sea basins is essential.
Streptococcus pneumoniae (pneumococci), a human pathobiont, express and expose several proteinaceous colonization and virulence factors on its surface to facilitate on the one hand colonization of the upper respiratory tract and on the other hand pathogenesis in the host. In this study the interaction of two of such factors referred to as pneumococcal virulence factor A (PavA) and pneumococcal virulence factor B (PavB) and acting as microbial surface components recognizing adhesive matrix molecules (MSCRAMMs), was delineated with the two host matricellular proteins fibronectin (Fn) and vitronectin (Vn). Despite similarity in nomenclature, PavA and PavB represent two diverse pneumococcal proteins with respect to their structure and association with the pneumococcal surface. PavA is a non-classical surface protein (NCSP) with an ambiguous mode of secretion and anchorage while PavB is a characteristic MSCRAMM, anchored via sortase A to pneumococcal peptidoglycan. PavB has a signature of repetitive modules termed as streptococcal surface repeats (SSURE). Pneumococci preferentially interact with immobilized human Fn. In vitro cell culture adherence assays demonstrated that cell bound Fn facilitates the adherence of pneumococci to the host cells and this particular interaction is indifferent to host cell type and is species non-specific. Flow cytometry and immunoblot analyses further indicated the ability of pneumococci to interact with the soluble form of Fn in a dose-dependent but species non-specific manner. The molecular interaction of PavA and PavB (via its SSURE domains) with Fn was delineated further in detail via several direct protein-protein interaction approaches. Ligand overlay assays, surface plasmon resonance studies and SPOT peptide arrays demonstrated that PavA and PavB target at least 13 out of the 15 type III fibronectin domains located in the C-terminal part of Fn. Strikingly, both pneumococcal fibronectin-binding proteins (FnBPs) recognize similar peptides in targeted type III repeats. Structural comparisons revealed that the targeted type III epitopes cluster on the inner strands of both β-sheets forming the fibronectin domains. Importantly, synthetic peptides of FnIII1, FnIII5 or FnIII15 bind directly to FnBPs PavA and PavB, respectively. Thus, analysis of interaction of pneumococcal FnBPs PavA and PavB revealed a probable conserved and/or common pattern of molecular interaction with human Fn. In addition to Fn, pneumococcal PavB interacts with other host matricellular proteins such as human plasminogen (Plg) and human thrombospondin-1 (hTSP-1). Pneumococcal proteins such as PspC and PspC-like Hic have earlier been demonstrated to interact with hTSP-1 as well as human Vn, thereby depicting a redundant function as MSCRAMMs. In this study the role of PavB as a pneumococcal vitronectin binding protein (VnBP) was assessed. Flow cytometric analysis suggested PavB as VnBP, because strains deficient for PavB exhibited a significantly decreased ability to acquire vitronectin compared to wild-type pneumococci. When using a double knockout, deficient in expression of PavB and the VnBP PspC, the pneumococcal interaction with vitronectin was completely abolished. The direct protein-protein interaction assays such as far western ligand overlay, ELISA, and surface plasmon resonance indicated the interaction of SSURE domains with both soluble and immobilized Vn. However, the binding activity depends on the number of SSURE domains with five SSURE showing the highest binding activity to Vn. The interaction of PavB with Vn was charge dependent and heparin sensitive as analyzed by ELISA. The importance of the heparin binding domains of Vn in this interaction was further analyzed via direct protein-protein interaction approaches. Binding studies (far western ligand overlay, ELISA, and surface plasmon resonance) with truncated recombinant Vn fragments indicated that PavB targets the C-terminal heparin-binding domain (HBD3) of vitronectin, a characteristic shared with PspC, hence, suggesting a conserved molecular interaction of pneumococci with Vn. In addition to its function as an MSCRAMM, PavB has the capability to interact directly with host epithelial cells via an unknown cellular receptor. Thus, this study aimed to identify cellular receptor(s) for PavB. In vitro cell culture adherence and invasion assays confirmed that pneumococcal PavB is involved in promoting pneumococcal adherence to respiratory epithelial cells without employing any molecular bridge. The direct interaction between PavB and host epithelial cells was further confirmed via direct binding assays when using Cy5-labeled PavB and flow cytometric analysis. Strikingly, exogenously added human vitronectin competitively inhibited binding of PavB to respiratory epithelial cells. This observation led us to hypothesize that the major vitronectin receptor αvβ3 integrin acts as a potential receptor for PavB. This hypothesis was supported by functional blocking assays with monoclonal antibodies recognizing specific integrin subunits. The results revealed reduced binding of PavB in the presence of bound antibodies recognizing αv integrin indicating that PavB employs αvβ3 integrin as its direct receptor on eukaryotic cells. This was further confirmed via a direct binding assay of PavB to mouse embryonic fibroblasts (MEFs) where cells lacking αvβ3 demonstrated a marked decrease in binding to PavB. Although functional blocking assay and direct binding assay with MEFs supported the role of αvβ3 integrin as a direct adhesin for PavB, RNA interference of αv integrin in epithelial cells did not impair the binding of PavB in αv-knocked down cells in comparison to non-transfected cells. Finally, surface plasmon resonance (SPR) analysis indicated the direct interaction between pneumococcal PavB and recombinant αvβ3 integrin. In this study we report for the first time the interaction of a Gram-positive extracellular pathogen, namely Streptococcus pneumoniae, with one of the host ICAMs, namely the αvβ3 integrin. In conclusion, the present study analysed some of the aspects of molecular interaction of pneumococcal MSCRAMMs PavA and PavB with hFn and hVn. The hot spots of interaction on C-terminal FnIII repeats were delineated for PavA and PavB. HBD3 was revealed to be pivotal for PavB-Vn interaction. In addition the redundant role of pneumococcal PavB as an MSCRAMM was demonstrated. Furthermore this study successfully identifies a direct receptor for pneumococcal PavB, namely αvβ3 integrin. The mechanism and biological rationale of this newly identified interaction is a matter of debate and awaits further scientific analyses.
The four stranded G-quadruplexes are important secondary structures of nucleic acids formed by guanosine-rich sequences. Besides the application as scaffold for technological applications, they are involved in many cellular processes such as gene regulation, replication, or maintenance of chromosomal ends. Characteristically, a large diversity of quadruplex structures is observed, whereas the correlation between sequence and structure is still not fully understood. In this thesis, the effects of modified nucleotides on G-quadruplexes were analyzed using NMR-spectroscopy to gain insight into driving forces determining the folding process. Contrary to DNA quadruplexes, the folding landscape of RNA structures is mostly restricted to parallel topologies. Therefore, ribose moieties were introduced into DNA sequences to isolate the effect of the additional hydroxy group. In this way, sequential CHO hydrogen bonds between the 2′-OH and the H8 of the 3′-neighbored anti conformer were identified and subsequently detected within RNA structures. In a second part, 2′-fluoro-2′-deoxyribose was incorporated at positions with guanosine in unfavored syn orientation. Instead of a changed global fold, the direction of the hydrogen bond network in the modified tetrad was reversed. This first example of tetrad inversion within a unimolecular quadruplex yielded a unique (3+1)-hybrid topology with only homopolar stacking interactions. Additionally, the effect was reproduced for another sequence and high-resolution structures were determined. Unfavored interactions between the 2′-fluorine and the narrow groove of the quadruplex were identified as a reason for different sugar conformations and consequent structural rearrangements.
This thesis highlights the impact of surface charges and negative ions on the pre-ionization, breakdown mechanism, and lateral structure of dielectric barrier discharges operated in binary mixtures of helium with nitrogen or electronegative oxygen. Sophisticated diagnostic methods, e.g., non-invasive optical emission spectroscopy and the electro-optic Pockels effect as well as invasive laser photodetachment and laser photodesorption, were applied at one plane-parallel discharge configuration to investigate both relevant volume and surface processes. Moreover, the experimental findings were supported by numerical fluid simulations of the discharge. For the first time, the memory effect of the measured surface charge distribution was quantified and its impact on the local self-stabilization of discharge filaments was pointed out. As well, it turned out that a few additional seed electrons, either desorbed from the charged dielectric surface or detached from negative ions in the volume, significantly contribute to the pre-ionization resulting in a reduced voltage necessary for discharge breakdown. Finally, effective secondary electron emission coefficients of different dielectrics were estimated from the measured breakdown voltage using an analytical model.
Pharmaceutical residues are found in increasing concentrations in the environment and in potable water where they have verifiable effects on aquatic life. Conventional methods for water treatment are not able to sufficiently abate these generally stable compounds. It was found that physical plasma generated directly in water can degrade several of these recalcitrant organic pollutants. Studies on the basic plasma chemical processes for the model system of phenol showed that the degradation is primarily caused by hydroxyl radicals. This was confirmed by reaction chemistry and spin trap enhanced electron paramagnetic resonance spectroscopy (EPR). The degradation of diclofenac and its by-products were investigated in detail to perform a first risk-assessment of the new technology. Findings are not limited to the application of plasma but applicable to other advanced oxidation processes (AOP) that are based on the generation of hydroxyl radicals as well. Additionally, pulsed corona plasma and pulsed electric fields were assessed for their capacity to kill Legionella pneumophila in water. Whereas it was possible to kill L. Pneumophila with both methods, plasma treatment resulted in an enhanced bacterial killing. Therefore, advanced oxidation processes (AOP) and plasma treatment in particular are some of the few feasible approaches to decompose recalcitrant compounds in water.
Chiral amines represent high-value fine chemicals serving as key intermediate products in pharmaceutical, chemical and agrochemical industries. In the past decades, application of amine transaminases (ATAs) for stereoselective amination of prochiral ketones emerged to an environmentally benign and economically attractive alternative to transition metal-catalyzed asymmetric synthesis to afford optically pure amines at industrial scale. However, the restricted substrate scope of wild-type transaminases prohibited the conversion of particularly sterically demanding substrates, making protein engineering indispensable. The following thesis covers elaboration of a novel assay for transaminases (Article I) and identification and development of transaminase variants in order to achieve biocatalytic preparation of a set of pharmaceutically relevant model amines, ideally in optically pure form for both stereoisomers, preferentially using asymmetric synthesis and most preferably using isopropylamine as cost-efficient amine donor co-substrate (Article II-IV). The aforementioned target amines and the corresponding precursor ketones (see Scheme 4.1) were conceived and provided by the company F. Hoffmann-La Roche to attain suitable biocatalysts for a variety of potential intermediates for active pharmaceutical ingredients. Protein engineering of the transaminase scaffolds investigated in this thesis comprised: Initial screening for suitable starting enzyme scaffolds, structure-guided rational design of these scaffolds to enable bulky planar substrate acceptance, elaboration of a sequence motif, verification of the motif and preparative-scale asymmetric synthesis reactions (Article II). For non-planar and structurally different target substrates, namely spatially bulky or bi-cyclic bridged substrates, the transaminase variants were specifically refined and a different evolutionary route had to be pursued (Article III and Article IV). These results (Article II) represent not only the first successful endeavor to engineer a PLP-fold type I amine transaminase (commonly denoted as (S)-selective) for the conversion of highly sterically demanding substrates, but also generally expanded the scope of available fold type I amine transaminases by enzymes having a novel and exceptionally broad substrate spectrum. Aside from structure-guided rational protein engineering, as well non-rational methods, such as site-specific saturation mutagenesis or directed evolution, were applied for protein-engineering. In order to do so for all of the target compounds, a novel high-throughput solid phase activity assay for transaminases that was actually developed during the master thesis, was refined and published (Article I). In the context of this thesis, the same assay principle was as well adapted for quantification of specific activities in liquid phase (Article III). A comparison of different methodologies for developing agar plate assays and a detailed step by step protocol of our transaminase assay are illustrated in a book chapter.
Tourism is a multifaceted economy and based on existing nature, as well as on culture in a geographical space to become a successful destination for tourism. The topic of this survey is how tourism in the transitioning country of Vietnam influences culture and nature or vice versa. A special focus will be on the transitioning aspect. This study gives insights about how in the transitioning country of Vietnam, tourism can act as an additional driver of change in terms of nature and culture or if tourism is only adapting to these changes. Therefore in the beginning the subject of ‘social-ecological transformation’ is described and furthermore the situation in Vietnam will be introduced. The key aspects here will be within the range of geography and sociology. It becomes evident, that scientific views on this topic are rather diverse, but nevertheless many theoretical aspects can be observed also in the investigation area Vietnam. Within the country several aspects of economic transition already became reality, while others, like social, ecological or political reforms, are still at the beginning. The empirical part of this study deals with existing thoughts, according to the topic of transition, in relation to tourism development and respectively to environmental understanding, by analyzing and comparing positions of 21 international and Vietnamese experts, 569 international tourists and 710 Vietnamese students. By doing so, similarities within opinions about tourism development and the environmental situation in the country became observable. While tourism is rated as a mostly positive development, the current environmental situation has mostly been criticized by all survey participants. Apart from that, connections between both aspects (tourism economy and nature) are often of no importance or the relationship is identified to be just a rudimentary one. In case of these opinions, involvement within one social group and personal experience is of larger importance than cultural conditioning (European or Asian), e.g. own travels, own jobs and own education. This fact becomes visible by very similar ratings of environmental problems on the one hand and the beauty of natural landscapes on the other hand, done by both survey groups; namely international tourists and Vietnamese students.
Quang Xuong is considered as one of the most developed districts in Thanh Hoa Province in terms of agricultural. The major purpose of this research is to find good places to suggest for annual crops production in the case study. Therefore, the assessment of land potential productivity, land suitability, and land cover/land use change in different periods is essential for making strategies of sustainable agricultural development as this will help land-users and land managers to discover the potential and limitations of the current existing land conditions to make appropriate policies and plans for future land use. Its results will provide basic information to make reasonable decisions for investments and rational reclamations of cultivated land before and after each crop season in order to meet the objectives of sustainable development in terms of economic efficiency, social acceptability, and environmental protection. The research site is located at latitudes 19 degree 34 minute N - 19 degree 47 minuteN and at longitudes 105 degree 46 minute E - 105 degree 53 minute E. The total area is about 227km2; in which 128km2 is in use for agricultural activities. Based on soil classification methods by FAO-UNESCO (1988), the agricultural land is classified into six main soil groups, including Arenosols, Salic Fluvisols, Fluvisols, Gleysols, Acrisols, and Leptosols, 12 soil units and 18 sub-units. The largest area belongs to the Fluvisols group with 9358.29ha and the smallest area is identified as the Leptosol group with 219.33ha. Most of the soil in this district has low to moderate nutrition, but in general, they are still suitable for agricultural production. There are 42 land units defined in the land mapping, which can be different from each other by one or more land characteristics. The land mapping unit is created from the overlay of all thematic maps of soil chemicals, soil physical characteristics, and relative topography together by application of GIS techniques. It presents land characteristics and properties in this case study and will be used in comparasion with a particular crop requirement for growth in land suitability evaluation process. A certain land unit may be suitable for one or more types of different land use. It is also classified as highly suitable for a specific land utilization type, but less suitable or unsuitable for other crops. For example, in this study, land unit 26 is determined as highly suitable (S1) for growing paddy rice and maize, but it falls into moderately suitability (S2) for groundnut crop by using parametric (square root) method used in this thesis. Depending on the kind of crops need to be evaluated and its requirement for development compared with each land unit characteristics, land-users will determine the best suitable place for crop production. Identification of land use change in different periods of time has become a central key to monitoring of land resources. It is relatively important for effective land management to protect the land resources, especially the land used for agricultural production from overuse and environmental changes. The sprawl of inhabitant areas, development of rural infrastructures, and industrialization are responsible for serious losses of agricultural land. In this study, remote sensing techniques were applied to studying the trends of land cover change in the abovementioned district in a period of about 24 years from 1989 to 2013. ArcGIS software was adopted to develop the land cover and the change of land use maps from 1989 to 2013. Two satellite images with moderate resolution were collected from USGS Earth Explorer website, Landsat5 TM for 1989 and Landsat8 OLI & TIRS for 2013. After image geo-processing, the images were classified into six land cover categories by applying supervised classification method (Maximum Likelihood). The six main obtained land cover types were built-up areas, agricultural land, forest land, water surface area, salty land, and unused land. The overall accuracies of land cover maps for 1989 and 2013 were 94.08% and 92.91%, respectively. The results of change detection analysis indicate that the cultivated, water surface and unused lands decreased by 22%, 17%, and 91%, respectively. In other side, the built-up and salty land increased by 78%, 58%, respectively and forest land increased from 52.69ha in 1989 to 395.76ha in 2013. The assessment of land potential productivity for agricultural production and land suitability for selected annual crops was based on FAO guidelines for land evaluation (FAO, 1976, 1985, and 1993) which were adopted and slightly modified for compatibility with Vietnamese conditions. All related data were stored, analyzed, mapped and presented in ArcGIS software. Weighted Linear Combination Method developed by Hopkins (1977) and GIS techniques were used to analyze and determine the land potential for agricultural use in the study area. The results show that 5.26%, 83.10%, 10.06%, and 1.57% of the investigated areas were assessed as high potential, moderate potential, low potential and very low potential for growing crops. Regarding land suitability evaluation, the simple limitation, parametric (square root), and AHP methods were used to evaluate the suitability levels for selected crops, including paddy rice, sweet potato, groundnut, maize, potato, sesame, soybean, and green pepper. The obtained results indicate that each applied method provides different results of land suitability level for a specific crop in certain land units compared to the other two methods, and OM, soil pH, soil texture, and relative topography were found out as the main limitation factors which affected land suitability level. The study also suggests that three different methods as abovementioned can be expanded and applied in other places with the appropriate factors used for land suitability evaluation according to particular area conditions.
Transfusion-related acute lung injury (TRALI) is an adverse transfusion reaction and the major cause of transfusion-related mortality. The syndrome occurs within six hours after transfusion and is characterized by acute respiratory distress and the occurrence of a non-cardiogenic, bilateral lung edema. TRALI is almost entirely induced by leukocyte-reactive substances which are present in the blood product and get transferred to the recipient during transfusion. The majority of cases (~80%) is caused by leukocyte-reactive immunoglobulins and is accordingly classified as immune-mediated TRALI. The responsible antibodies are generated via alloimmunization and are directed against human leukocyte antigens of class I and II or human neutrophil alloantigens (HNA). Within the HNA class, HNA-3a antibodies have an exceptional clinical relevance as they are most frequently involved in severe and fatal TRALI cases. The high mortality was associated with their characteristic ability to induce a strong neutrophil aggregation response. The described clinical relevance of HNA-3a antibody-mediated TRALI motivates the screening for new strategies for preventive or acute pharmacologic intervention. Knowledge of the molecular pathomechanisms is a crucial prerequisite and thus, respective investigations are required. In order to achieve this goal, HNA-3a antibody-induced cytotoxicity and aggregation were assessed on the molecular level by usage of flow cytometry, the granulocyte agglutination test and by phosphoproteome analysis. The current study provides insight into molecular processes during HNA-3a antibody-induced neutrophil responses and is the first to assess neutrophils using global, gel-free phosphoproteome analyses. Accordingly, it is the first to provide neutrophil phosphoproteome data in the context of TRALI. Gel-free phosphoproteome analyses of primary neutrophils required the highly selective and sensitive phosphopeptide enrichment from stable and sufficiently large protein extracts. However, an appropriate workflow did not exist and was hence developed by sequential protocol optimization steps. The developed workflow was finally proven suitable for comparative gel-free phosphoproteomics when detecting the formyl-methionyl-leucyl-phenylalanine-induced activation of extracellular signal-regulated kinase 1/2 (ERK1/2) signaling in a proof-of-principle experiment. The following single parameter analyses were conducted to investigate neutrophils for their responses to HNA-3a antibodies in absence and presence of proinflammatory priming conditions. Results revealed that the direct stimulation of neutrophils with HNA-3a antibodies will likely not cause the induction of cytotoxic effector functions. In contrast, neutrophils react predominantly by aggregation, a process which is potentially mediated by integrins and causes a secondary, subthreshold activation of solely ERK2. Accordingly, only the neutrophil aggregation response could also be enhanced by an appropriate priming. Taken together, the single parameter analyses proved neutrophil aggregation as the main pathomechanism in HNA-3a antibody-mediated TRALI and thus, the underlying signaling pathways were investigated by global, gel-free phosphoproteomics. The following phosphoproteome analyses indicated the induction of a biphasic signaling during 30 minutes of HNA-3a antibody treatment and signaling pathways of Rho family GTPases could be associated with the first and the second phase. Additionally, the involvement of ERK signaling was indicated in the second phase and this result corroborated thus the data of the previous single parameter analyses. The comprehensive analysis of the identified signaling pathways revealed Rho, Rac and Cdc42 as central regulators and the specific inhibition of Rho in the following validating experiments led very intriguingly to a significant enhancement of HNA-3a antibody-mediated neutrophil aggregation. Hence, this result indicated a potential inhibitory effect of HNA-3a antibodies on Rho activity. Therefore, Rho inhibition was suggested to occur in parallel to an adhesion-inducing signaling pathway and might hence be involved in the stabilization of neutrophil aggregates in HNA-3a antibody-induced TRALI. The results from this doctoral thesis contributed to the generation of a new pathogenesis model for HNA-3a antibody-mediated TRALI. In this model, neutrophils respond to direct HNA-3a antibody exposure predominantly by homotypic aggregation. These potentially very stable and primed aggregates accumulate in the lung and are susceptible to parallel, proinflammatory stimulation. Subsequently, this cascade leads to full neutrophil activation and finally to TRALI induction.
Costs of reproduction. A demographical approach to examine life-history trade-offs ─ Abstract. Resource-allocation trade-offs are fundamental constraints of life-history evolution. In particular the trade-offs between reproduction and longevity and between present and future reproduction are expected to form reproductive patterns. Unfortunately, exploring such trade-offs in natural populations is complicated and may not be possible. In face of several limitations, zoo data appear to be useful to better understand the reproductive biology of endangered, rare or cryptic species. In the first step, it was sought after with a data-mining, comparative multi-species approach for broad patterns of correlations between lifespan and variables in bird-eating spiders (Theraphosidae). The subfamily Eumenophoriinae on average lived longest, followed by the Theraphosinae, Ornithoctinae, Grammostolinae, Selenocosmiinae, Ischnocolinae and finally the Avicularinae. Species inhabiting tropical, more humid and/or low-altitude environments lived longer, suggesting that more predictable environments favour the evolution of longer lifespans. Furthermore, large range size, low abundance, sub-terrestrial life-style, and aggressive behaviour were all linked with longer lifespans. An argument for resource allocation trade-offs was found as larger spiderling and prosoma size were negatively related to longevity. In the second step, a demographical approach has been applied for two old-world deer species (Vietnamese sika deer Cervus nippon pseudaxis, Mesopotamian fallow deer Dama dama mesopotamica). In both species, births peaked right before the onset of the rainy season in natural environments. Females reached high reproductive output earlier in life and had (in one species only) higher survival rates than males. Offspring number covaried positively rather than negatively with longevity. In females, the length of the reproductive phase correlated positively with longevity, birth rate within the entire lifespan, and offspring number, while it was negatively correlated to the birth rate during the reproductive phase (in one species). The length of the post-reproductive phase was positively related to longevity and negatively to birth rate during the entire lifespan. In the third section, life-histories of Asiatic (Equus hemionus ssp.) and African wild asses (Equus africanus ssp.) have been anlaysed in a comparative way with another demographical long-term approach. All taxa showed even in captivity peak birth rates during the periods of highest food availability in their natural environments. Sex-specific survival rates with females living longer than males were evident in Kulan and Onager but not in Kiang and Somali wild ass, pointing towards different life-history strategies even among closely related taxa. Females achieved their highest reproductive output earlier than males, which is typical for polygynous mating systems. Offspring number and longevity were rather positively correlated than negatively. Taken together evidence for reproductive trade-offs was weak, though the length of the reproductive period was negatively related to birth rates within the reproductive period. Birth intervals increased with female age, probably reflecting detrimental effects of senescence.
In this work, the discovery, expression and characterization of new eukaryotic Baeyer-Villiger monooxygenases (BVMOs) from yeasts has been shown. A rational design of one of these enzymes led to the identification of key residues to alter the sulfoxidation activity of this group of enzymes. Additionally, in another rational design approach, the cofactor specificity of the BVMO cyclohexanone monooxygenase from Acinetobacter calcoaceticus could be substantially altered to accept the much cheaper and therefore industrially more relevant cofactor NADH.
The virosphere comprises all known and unknown viruses in our ecosystems. Advanced sequencing technologies in combination with metagenomic analysis have become a key tool for exploring this global diversity of viruses. However, discovery of novel viruses and comparative analyses are often based on small sequence fragments or lack biological context, which restricts a proper classification. In this study advanced genomic methods were used that included comprehensive knowledge of viral genomes along with supporting biological metadata in order to identify and classify viruses at different levels of genetic relationships. In a first example, the genetic background of vaccine-induced rabies cases was revealed by analyzing and comparing the genetic diversity of viral populations. Furthermore, the fundament for a taxonomic reclassification of orthopoxviruses was established on basis of a wide scale genomic analysis. In addition, novel neurotropic mamastroviruses from sheep and cattle were classified as members of a single species that provided evidence of interspecies transmission. Finally, two putative novel species of alphaherpesviruses and orthopoxviruses were identified. These examples are based on field cases that provide substantial corresponding clinical metadata and information of host-pathogen interactions. The analyses, therefore, puts taxonomic classification into biological and epidemiological context, rather than addressing generic phylogenetic relationships. Furthermore, the presented work demonstrates that a universal approach for virus classification is neither feasible nor reasonable as analyses must be adjusted the nature of the addressed virus. All results with impact on the current taxonomic classification will be or are already reported to the International Committee on Taxonomy of Viruses. In conclusion, this thesis contributed to the classification concepts of viruses and expanded the knowledge of virosphere diversity.
Deflected by the barrier function of topographical structures such as high mountain ranges, open water bodies or desert, migrating birds concentrate at certain points or corridors referred to as ‘bottlenecks’. An area like this was discovered at Mount Besh Barmag (Azerbaijan) in autumn 2007, but the data gathered during a four-week survey was insufficient to do more than hint at the existence of a major bird migration bottleneck. Therefore, a comprehensive bird migration study was conducted to analyse the magnitude of this potential bottleneck site. The study covers the periods from August to mid-November 2011 and from March to the end of May 2012 and includes daily counts at three observation points focusing on three different migrant types: passerine, waterbirds and soaring birds. In addition, a sound recorder with an omnidirectional microphone collected bird migration calls by both day and night. In total, 278 bird species were observed in an estimated passage of 1,239,369–1,514,267 diurnally migrating individuals in autumn 2011 and 646,733–817,183 individuals in spring 2012. Fifteen species passed through the study area in numbers exceeding 1% of their world populations and 34 species in more than 1% of their flyway populations in at least one of the observation periods. 84% of the observed migrating birds in autumn 2011 and 95% of them in spring 2012 passed through at heights below 50 m above ground exposing them imminently to the danger of collision with obstacles. In the analysis of nocturnal sound recordings, 119 bird species were identified of which 106 were expected to occur as migrants, and calculated estimates revealed the occurrence of 108,986 calls in autumn 2011 and 33,348 calls in spring 2012. The volume of diurnal bird migration emerging from the data with respect to species number and number of individuals is certainly a strong indication of the existence of a major bird migration bottleneck at Besh Barmag. On account of methodological constraints, the high number of night flight calls can only hint at a nocturnal bird migration bottleneck and confirmatory research aided by visual methods (radar, thermal imaging) is necessary to back up the acoustic results. The Besh Barmag bottleneck offers a great opportunity to establish a standardised long-term monitoring programme to investigate avian population dynamics in the vast and little known Eurasian landmass. Acoustic-based monitoring might be a cost-effective method, but it is limited to a few vocally prolific species only. The aim should rather be the establishment of a bird observatory as already successfully installed in a number of European bird migration bottlenecks.
Introduction: Ketamine (KET) is widely used as anaesthetic drug. Beside its pronounced an-aesthetic effects as caused by antagonism of NMDA receptors, ketamine also causes potent analgesia. Moreover, There are ample new evidences, firstly, that 2R,6R/2S,6S-enantiomers of hydroxynorketamine (HNK), exert neuro-modulating effects by AMPA-receptor activation and, secondly, that the plasma levels of norketamine (n-KET) after oral dosing are higher than after intravenous administration. From the physicochemical point of view ketamine is expected to be a substrate of drug transporters. Thus, it was the aim of this study to separate and quantify KET and its metabolites in human serum, urine and feces; investigate the role of transporter proteins in the intestinal absorption, distribution and elimination of ketamine; and evaluate pharmacokinetics and metabolism of a newly developed prolonged-release keta-mine dosage form to confirm its suitability for chronic treatment of CNS-diseases (e.g. de-pression) according to the new “ketamine metabolite paradigm”. Materials and methods: Quantification of ketamine was done by a LC-MS/MS-based quantifi-cation method on the QTRAP4000 instrument. Samples were extracted by methyl tert-butyl ether after addition of sodium carbonate to liberate the free base; Single transfected MDCKII cells overexpressing OCT1, OCT2, OCT3, and MATE1 or MATE2K, and HEK293 cells over-expressing OATP2B1 were used to study the cellular uptake of ketamine. Inside-out lipovesi-cles were used to determine the affinity of ketamine to the efflux transporter P-glycoprotein (P-gp). Uptake into cells or vesicles was determined by liquid scintillation counting. Func-tionality of all in vitro systems was assured by using in each case appropriate probe sub-strates; The dose-escalation study was performed in five consecutive periods (7 days wash-out) in 15 healthy subjects (5 females and 10 males. 20-35 years, BMI 19.4-27.6 kg/m2). Results: We introduce for the first time the separation and quantification of the active me-tabolites 2R,6R/2S,6S-HNK; Ketamine was shown to be taken up significantly in a time- and concentration-dependent manner by OCT1-3. The affinity to OCT transporters at pH=6.5 was several fold higher than that at pH=7.4. ), ketamine showed a significant but low affinity to P-gp. In contrast to this, we could not detect any transport of ketamine by MATE1 / 2K or OACPT2B1; and PR-KET was safe and well tolerated with higher metabolites productivity, different pharmacokinetic properties and longer T1/2 when compared to IV-KET or IR-KET. Conclusion: the uptake transporters OCT1 & 3 and the efflux transporter P-gp may play a role in the intestinal absorption of the drug. On the other side, P-gp, MATE1 / 2K and OCT are not expected to contribute significantly to tissue (brain) distribution or renal excretion of ketamine; Moreover, the prolonged-release ketamine undergoes dose-dependent “first-pass” metabolism which generates substantially increased plasma exposure of downstream me-tabolites with potential neuro-modulating effects compared to ketamine after intravenous administration.
Background: Early childhood caries remains an unsolved problem in children under three worldwide. Midwives are important health care persons around birth and can shape behavior. They possibly can play a positive role in preventing early childhood caries in young children. Objective: to assess how involved midwives are in early childhood caries prevention, what preventive measures they recommend and what knowledge they have about early childhood caries, as well as to study the potential differences between the various federal states or due to their work experience. Materials and Methods: An online survey targeted midwives in Germany regarding their knowledge about early childhood caries as well as the preventive measures they recommended. Participants were members of the German Association of Midwives (DHV). The survey invitation was published with the monthly newsletter and in the association journal of the DHV. Data was collected anonymously. Results: 191 midwives nationwide responded to the questionnaire. Most midwives were aware about ECC prevalence, consequences, causes and the teeth mainly affected. Midwives gave excellent recommendations regarding diet, oral hygiene and avoiding prolonged bottle feeding. However, only 40.8% of midwives recommended the first dental visit with the eruption of the first tooth. 71.7% recommended a fluoride tooth paste with the eruption of the first tooth. The rest advised a later use or non-fluoridated toothpaste. Regional differences were minimal. Conclusion: Midwives have good oral health knowledge, but there is some variability in recommendations on the first dental visit and the use of fluoride toothpaste which reflects an inconsistency of professional recommendations delivered by different health care institutions in Germany.
Forests are and have been of major importance to cover a variety of societal needs. Today the demands on forests are ever increasing with sequestering carbon and balancing the climate, to name only a few. To cover those requirements forests need vital, productive, and sustainable. A difficult concept as such as the understanding of a healthy forest varies greatly. Nevertheless, forests still have to produce a sufficient amount of yield while threatened by changing climate conditions. These are predicted to bring extended and more intense drought periods as well as a higher frequency of storms and the promotion of secondary disturbances like insects calamities to also rise. In this complex situation of high and versatile demand the focus is on the allocation of the “right” forest. Forest management is requested to balance the needs of humans against those of wildlife against those of the trees themselves. To gain the respective knowledge on species responses and provenance growth, now and in the future research gaps need to be closed. All factors influencing tree growth and therefore ultimately yield need to be understood and special focus needs to be on the interactions within the forest ecosystem. One of the parameters in understanding aggregated tree growth is the dynamic of growth. This can be visualised by dendroecological methods, providing a picture of growth within the individual years. Growth dynamics are dependent on multiple factors, some, like soil being preconditioning and other like climate causing short-term responses. In this thesis I focus on the influence of climate on annual tree growth using a new approach of daily climate data to calculate climate-growth correlations. This method has the advantage of representing tree processes better than the former approach of using monthly means. Furthermore the program enables the user to feed climate scenarios and therefore estimate future growth. To gather information on species as well as provenance differences to provide advice to foresters I used different trials in Britain and Germany. On the British site different oak species were planted while the German sites are stocked with various spruce provenances. For the latter we additionally used stable carbon isotope analysis to calculate intrinsic water use efficiency. The climate-growth correlations revealed differences between the oak species with a generally higher linkage to precipitation than temperature. While the differences are clear, the question of thresholds and the role of extreme events became apparent in this work. VII Abstract Assessing the impact of extreme events using dendrometer data revealed little differences in the response to short term events of the three investigated species, oak, beech, and pine. We were able to pick up stimulus-response-relationships and as a novel result no species-specific responses were found when focusing on such a small time frame. The provenance trials offered the opportunity to investigate the potential of the use of daily climate data more closely. The two contrasting sites planted with six spruce provenances each gave an insight on the adaptive potential of provenances as well as an indication on the response times. Depending on the proceeding environmental and the local climate conditions decisions have to be made on the species or provenance selection. This thesis provides a method as well as insight on the behaviour of the important European species beech, oak, pine, and spruce. It, however, highlights the limitations such methods have for large scale estimates. While general trends on the response to specific soil factors can be used, the climatic responses, be it thresholds or climate-growth correlations can only be seen within the ecological context of their sampling region.
The present doctoral dissertation comprises new studies on the fossil vertebrate assemblage recovered from the late Early Jurassic marine “Green Series” clay deposits of Grimmen and Dobbertin in north-eastern Germany that contribute to fill the gap of knowledge regarding its faunal composition and its relevance for understanding Early Jurassic vertebrate life. The investigations led to the recognition of wide range of vertebrate taxa, including basal gravisaurian sauropods, secondarily marine reptiles, a diverse fauna of leptolepid fishes, and a new genus and species of pycnodontiform fishes. In addition, a taxonomic revision of the Early Jurassic saurichthyid fish Saurorhynchus was performed, leading to the identification of two new, previously unnamed species. The results provide new insights into the taxonomic, systematic, and ecological diversity of Early Jurassic vertebrates, and hence add significant new data to our knowledge on Lower Jurassic vertebrate palaeobiodiversity patterns.