Open Access

S-adenosyl-L-methionine- (SAM) dependent methyltransferases (MTs) catalyse methylation of halide ions and the C, O, N, S, Se, and As atoms of biomolecules ranging from biopolymers to small molecules. They display different chemo-, regio- and stereoselectivity according to their specific functions. This thesis focuses on the engineering of O-methyltransferases (OMTs) and halide methyltransferases (HMTs) through rational design and directed evolution to study their structure-function relationship and to explore their catalytic promiscuity. The influence of substrate binding residues on the substrate scope and regioselectivity of a plant OMT against various phenolic substrates (Article I) and flavonoids (Article II) has been investigated. Article III describes the directed evolution of an HMT for the biocatalytic synthesis of diverse SAM analogues. With the evolved HMT, regioselective alkylation of phenolic compounds and flavonoids, as well as the SAM analogue regeneration, were achieved through an HMT-MT cascade reaction. Article I Specific residues expand the substrate scope and enhance the regioselectivity of a plant O-methyltransferase. It was reported in literature that an isoeugenol 4-OMT (IeOMT) can be engineered to a caffeic acid 3-OMT (CaOMT) by replacing three consecutive residues. In this article, we investigated the effect of these residues on substrate preference and regioselectivity of IeOMT. The triple mutant T133M/A134N/T135Q and the respective single mutants were constructed and tested against a series of phenolic compounds. The variant T133M had a universal effect to improve enzymatic activities against all tested substrates while the mutant A134N had enhanced regioselectivity. The triple mutant T133M/A134N/T135Q benefits from these two mutations, which not only expanded the substrate scope, but also enhanced the regioselectivity of IeOMT. On the basis of this work, regiospecific methylated phenolics can be produced in high purity by different IeOMT variants. Article II Influence of substrate binding residues on the substrate scope and regioselectivity of a plant O-methyltransferase against flavonoids Flavonoid OMTs (FOMTs), isoflavonoid OMTs (IOMTs) and phenylpropanoid OMTs (POMTs) display different substrate preferences. Sequence comparison showed that the substrate binding residues at positions 322 and 326 are different between these OMT groups and might be critical for the substrate discrimination. Residues at positions 322 and 326 in IeOMT (a POMT) were mutated to the commonly presented residues in FOMT and IOMT. The introduced mutants, in cooperation with the variant T133M, have improved or brought novel activities and regioselectivity against the tested flavonoids eriodictyol, naringenin, luteolin, quercetin, and also the isoflavonoid genistein compared to the wild-type IeOMT. On the basis of this work, methylated flavonoids that are rare in nature were produced in high purity. Article III Directed evolution of a halide methyltransferase enables biocatalytic synthesis of diverse SAM analogs Biocatalytic alkylations to obtain chemo‐, regio‐ and stereoselectively alkylated compounds can be achieved by MTs with the supply of SAM analogues. It was recently discovered that SAM can be directly synthesized from S adenosyl-L homocysteine (SAH) and methyl iodide, catalysed by an HMT. To explore the promiscuity of HMT in the synthesis of SAM analogues, we performed directed evolution of the Arabidopsis thaliana HMT based on a sensitive, colorimetric iodide assay. The identified variant V140T displayed activities against ethyl‐, propyl‐, and allyl iodides to produce the corresponding SAM analogues. With this HMT variant, regioselective ethylation of luteolin and allylation of 3,4‐dihydroxybenzaldehyde, as well as the SAM analogue regeneration, were achieved through this HMT-MT one-pot cascade reaction.

In Germany, basic data on the biology, ecology and distribution of rare mosquito species are insufficiently recorded leading to knowledge gaps, for example regarding their vector potential. The introduction of new mosquito species and of the pathogens they transmit has increased the risk of diseases previously uncommon in Germany. These circumstances have led to increased efforts within the past 10 years to better understand the spatio-temporal occurrence and underlying habitat binding of mosquito species and to predict their future distribution, particularly with regard to the changing climatic conditions and changing landscape. A reliable morphological and genetic identification was lacking for several native mosquito species, which forms the basis for any robust monitoring within mosquito surveillance programs or insect conservation projects. The aim of this thesis was to gain detailed knowledge on the current spatial and temporal occurrence, the habitat binding, and morphological and genetic features with regard to species identification for the non-native species Aedes albopictus (Skuse, 1895), the native species of the Aedes Annulipes Group, and the native and rare species Aedes refiki Medschid, 1928, Culex martinii Medschid, 1930 and Culiseta ochroptera (Peus, 1935). The thesis compares the suitability of the local climate for the persistence of the species Aedes albopictus sporadically observed in Jena (Thuringia) from 2015 to 2018 with two populations in southern Germany. The focus was on the analysis of extreme winter temperatures and the duration below selected temperature thresholds. In addition to critical temperature conditions, aquatic habitat conditions were of importance. The results of this study suggest that the population could become established in the long term. Through the monitoring conducted for this thesis, the very rare mosquito species Aedes refiki, Culex martinii in Thuringia and Culiseta ochroptera were rediscovered at several sites in northern and eastern Germany. It was possible to add new information on habitat binding, distribution and abundance for the considered mosquito species. The survival of these rare native mosquito species depends on the preservation of a few remaining habitats. In addition, it can be assumed that these species will become even rarer with future climate change in Germany and, therefore, should be considered endangered. In contrast, other mosquito species could benefit from an increase in average temperatures or precipitation in individual cases. Due to the contribution to species identification, difficulties in the morphological and genetic identification of selected mosquito species native to Germany could be dispelled. Three forms each were assigned to the known morphological variants of Aedes refiki and Culiseta ochroptera and their peculiarities were described, as well as a new character for species identification was highlighted in the case of Culiseta ochroptera. Generated CO1 mtDNA sequences provide the first DNA-barcodes of Aedes refiki and Culex martinii for Germany. In five native mosquito species of the Aedes Annulipes Group, twenty types of aberrant tarsal claws were illustrated and described in their morphology. Morphological peculiarities and an asymmetrical occurrence of the aberrant claw types were observed and possible causes for their development were discussed. Together with the development of a basic blueprint of mosquito tarsal claws, the results opened another field of research for the taxonomy, developmental biology and aquatic ecology of arthropods.

Background: To reduce the burden of disease attributable to alcohol, screening for at-risk alcohol use in the general population is recommended. Screening is usually carried out at only one point in time although individual alcohol use may change over time and self-reported consumption may be biased by underreporting. However, there are gaps in research on temporal variability of alcohol use. Therefore, this cumulative dissertation investigated (1) changes in drinking patterns within 4 weeks; (2) changes in screening results within 12 months and factors predicting a transition from low-risk to at-risk alcohol use; (3) whether underreporting can be reduced by prompting respondents to recall their alcohol use in the past week prior to screening. Methods: Participants were adults from the general population recruited in a municipal registry office. For the first paper, 288 alcohol users were assessed four times using Timeline Follow-Back, each one week apart. Changes in drinking patterns were analyzed using latent transition modeling. For the second paper, 831 control group participants of a randomized controlled trial were screened for at-risk alcohol use at baseline, 3, 6, and 12 months later using the Alcohol Use Disorders Identification Test - Consumption (AUDIT-C). The transition from low-risk to at-risk alcohol use was predicted using logistic regression. For the third paper, 2,379 alcohol users were screened for at-risk alcohol use using the AUDIT-C, either before or after receiving the prompt to recall their past week alcohol use. Data were analyzed using logistic regression. Results: Within 4 weeks, 35 percent of alcohol users changed their drinking pattern. Changes were more likely for individuals with moderate or heavy compared to light drinking. Within 12 months, 30 percent of alcohol users changed their screening result. Changes were more likely for at-risk compared to low-risk alcohol users. Transitioning from low-risk to at-risk alcohol use was more likely for women (vs. men; Odds Ratio, OR = 1.66), 18- to 29-year-old adults (vs. 30- to 45-year-old adults; OR = 2.30), and individuals reporting two or more drinking days in the past week (vs. less than two; OR = 3.11). When respondents were prompted to recall their alcohol use in the past week prior to screening, they were less likely to report at-risk alcohol use compared to when the screening was conducted without prior prompt (OR = 0.83). Conclusions: One in three alcohol users changed their consumption, some of them even within a period as short as 4 weeks. These changes might compromise the validity of screening that is commonly based on a single assessment of typical alcohol use. Furthermore, underreporting cannot be reduced by prompting individuals to recall their alcohol use in the past week prior to the screening for at-risk alcohol use. Rather, consecutive questionnaires addressing different aspects of alcohol use within a single survey might be a potential source of bias.

Oral administration of drugs is the most common, convenient, safest and economical route of drug administration. There is lack of established tools to study the function of transporters in the intestinal absorption of drugs. Because of its favorable physico-chemical, pharmacokinetic and pharmacodynamic characteristics, trospium could be potentially used as a probe substrate to study the function of drug transporters. Therefore, this study was conducted to examine the suitability of trospium chloride as a probe drug to study the function of multidrug transporters in the human body. To this end, two randomized, controlled, four-period, cross-over pharmacokinetic drug interaction studies of oral and intravenous trospium with co-medication of oral clarithromycin or ranitidine were performed in 24 healthy subjects to mechanistically characterize the role of P-gp, OATP1A2, OCT1, OCT2, MATE1 and MATE2-K in the absorption and disposition of trospium. The contribution of the drug transporters in the absorption and disposition of trospium were examined in isolated systems using in vitro uptake and inhibition assays in transporter transfected human cell lines. OCT1 (Vmax = 0.8 ± 0.1 nmol/min × mg) is a high capacity transporter of trospium compared to OCT2 (Vmax = 0.04 ± 0.01 nmol/min × mg). But the OCT2 (Km = 0.5 ± 0.1 µM) transporter demonstrated a high affinity in the transport of trospium compared to OCT1 (Km = 17.4 ± 2.1 µM). OCT1 genetic alleles *2, *3, *4 and *7 resulted in significant loss of activity and the alleles *5 and *6 caused complete loss of uptake of trospium. The common OCT2 genetic allele Ser270 caused slight but significant increase in activity of OCT2. Ranitidine inhibits OCT1 (IC50 = 186 ± 25 µM), MATE1 (IC50 = 134 ± 37 µM) and MATE2-K (IC50 = 35 ± 11 µM)-mediated uptake of trospium in vitro. But it is a weak inhibitor of OCT2 transporter (IC50 = 482 ± 105 µM). Using FDA and EMA in vitro to in vivo extrapolation models, ranitidine was predicted to have a potential inhibition effect on intestinal OCT1 ([I]2/IC50 ~40), renal MATE1 ([I]1/IC50 ~0.02) and MATE2-K ([I]1/IC50 ~0.1) transporters in vivo. Clarithromycin was predicted to cause DDI by inhibiting P-gp-mediated efflux of trospium at the intestine ([I]2/IC50 of ~310) and hepatocytes ([I]3/IC50 ~1). Therefore, co-medication of oral clarithromycin was expected to result in an increase in oral absorption and hepatic clearance of trospium but not changes in distribution volume. In healthy subjects, oral trospium is slowly (MAT ~10 h) and poorly (F ~10 %) absorbed from the jejunum and cecum/ascending colon, widely distributed into the body (Vss = 5 - 6 l/kg) and slowly eliminated (t1/2 = 9 - 10 h) majorly via renal glomerular filtration and tubular secretion (CLR ~500 ml/min). After co-medication of clarithromycin (inhibitor of P-gp), on the contrary to our IVIVE prediction, we found a non-expected but significant expansion of the shallow and deep distribution spaces for trospium by ~27 %. A single dose administration of trospium with co-medication of ranitidine (inhibitor of OCT1) resulted in no effect on the intestinal absorption of trospium. But the renal clearance of trospium decreased slightly (15 %) but significantly. Intravenously administered trospium (2 mg TC) might be a suitable probe drug to evaluate the effects of a P-gp inhibitor on distribution of a drug. Oral trospium chloride can be selected for DDI studies with new chemical entities (NCE) with predicted inhibitory potential on OCT1 and P-gp and which are available after oral absorption along the small intestine and in the cecum/ascending colon. Another kind of application of trospium chloride might be pharmacogenomics studies in subjects with functionally relevant polymorphisms of P-gp and OCT1 or in patients with suspected transport failure due to intestinal diseases. The function of the efflux transporters MATE1 and MATE2-K in the PTC of the kidneys can be well assessed with the probe drug trospium by measuring its renal clearance.

Morphological changes of the complex 3-D architecture of podocytes as well as the loss of these post-mitotic cells often result in severe kidney disease. Since currently, there are no curative drugs, we focused on the identification of non-invasive biomarkers, allowing an early detection of the onset of such diseases. Therefore, we analyzed the cellular- and the cell-free fractions of urine samples from patients suffering from chronic kidney disease (CKD), especially for injury markers as well as for exosome-derived miRNAs. We identified the mRNA of the neuronal protein brain-derived neurotrophic factor (BDNF) in the cellular fraction of 120 CKD patients and found that the expression was highly correlated with the mRNA expression of the kidney injury marker molecule 1 (KIM-1). Furthermore, we found that both were correlated with the mRNA expression of the podocyte-specific gene Nephrin (NPHS1), suggesting that podocytes are very likely the cellular source. Beside this, we observed that BDNF is upregulated in biopsies of diabetic patients and seems to be involved in the differentiation of podocytes. Immunofluorescence staining clearly showed that BDNF is localized in the cell body and major processes of podocytes within the glomerulus. Knockdown experiments in zebrafish larvae, a well-established animal model to study kidney function, showed the importance of BDNF on kidney function, morphology and filtration in vivo. Additionally, we analyzed circulating exosomal microRNAs (miRs) isolated from the cell-free urine fraction. After the optimization of a column-based isolation protocol for exosomes, we identified miR-16 from a pre-selected set of candidates as a suitable endogenous reference gene for data normalization. Subsequently, we analyzed the exosomal levels of miR-21, miR-30a-5p and miR-92a in urine samples of 41 CKD patients and 5 healthy controls. We found significantly enhanced levels of miR-21 in CKD patients that were also negatively correlated with the eGFR, suggesting a negative influence on kidney function. MiR-21 was also highly upregulated in de-differentiated glomeruli and in kidneys of nephrotoxic serum- (NTS-) treated mice as an in vivo kidney injury model. To summarize, we identified two promising new and non-invasive biomarkers for CKD in the urine of patients which may also have a functional relevance on kidney function.

The importance of ion propulsion devices as an option for in-space propulsion of space crafts and satellites continues to grow. They are more efficient than conventional chemi- cal thrusters, which rely on burning their propellant, by ionizing the propellant gas in a discharge channel and emitting the heavy ions at very high velocities. The ion emission region of a thruster is called the plume and extends several meters axially and radially downstream from the exit of a thruster. This region is particularly important for the effi- ciency of a thruster, because it determines energy and angular distribution of the emitted ions. It also determines the interaction with the carrier space craft by defining the electric potential shape and the fluxes and energies of the emitted high energy ions, which are the key parameters for sputter erosion of satellite components such as solar panels. Developing new ion thrusters is expensive because of the high number of prototypes and testing cycles required. Numerical modeling can help to reduce the costs in thruster development, but the vastly differing length and time scales of the system, particularly the large differences of scales between the discharge chamber and the plume, make a simulation challenging. Often both regions are considered to be decoupled and are treated with different models to make their simulation technically feasible. The coupling between channel and plume plasmas and its influence on each other is disregarded, because there is no interaction between the two regions. Therefore, this thesis investigates the physical effects which arise from this cou- pling as well as models suitable for an integrated simulation of the whole coupled problem of channel and plume plasmas. For this purpose the High Efficiency Multistage Plasma Thruster (HEMP-T) ion thruster is considered. For the discharge channel plasma, a fully kinetic model is required and the Particle-in-Cell (PIC) method is applied. The PIC method requires very high spatial and temporal resolu- tions which makes it computationally costly. As a result, only the discharge channel and the near-field plume close to the channel exit can be simulated. In the channel, the results show that electrons are magnetized and follow the magnetic field lines. The orientation of the magnetic field there is mostly parallel to the symmetry axis and the channel walls which re- sults in a high parallel electron transport and leads to a flat electric potential and a reduced plasma-wall sheath. Only at the magnetic cusps, which are characteristic of HEMP-Ts the electrons are guided towards the wall, with ions following due to quasineutrality, where a classical plasma-wall sheath develops. The ion-wall contact is thus limited to the cusp re- gion. The small radial drop of the potential towards the wall gives rather low energies of ions impinging at the wall and minimizes erosion in the HEMP-T. In the near-field plume, which extends from the thruster exit plane to some centimeters downstream, the ion emission characteristics is defined. The ratio of radial and axial elec- tric field components in this region determines the ion emission angle which should be minimized for maximum thruster efficiency. The plasma discharge in the channel produces high plasma densities and the subsequent drop from plasma to vacuum potential occurs further downstream for higher densities. This increases the ratio of radial and axial electric field components because the plasma expands radially outside of the confinement from the dielectric discharge channel walls. The potential structure in the near-field plume impacts also the supply of electrons for the channel discharge because the electrons enter the channel from the plume. An effect which arises from this coupling is the breathing mode oscilla- tion. It is an oscillation which is observed in all plasma quantities and is located near the thruster exit. The oscillation frequency measured in the simulation is in good agreement with a predator-prey estimate which validates this ansatz. However, the electron tempera- ture, assumed constant in the predator-prey model, correlates inversely with the oscillation, i.e. it is minimal at the current maximum and vice versa, which contributes to the observed oscillations. Because of the oscillation of the plasma number density, the potential drop also oscillates in the exit region and thus the ratio of radial to axial electric field components, which results in the oscillation of the mean ion emission angle. Regarding suitable models for a combined simulation of channel and plume plasmas, the PIC model for channel and near-field plume is explicitly coupled to a hybrid fluid-PIC model for the plume. The latter treats the electrons as a fluid, hence increasing the effective spatial and temporal resolutions which can be applied in the plume simulations at the cost of reduced accuracy of the electron model. Plasma densities decrease by two orders of magnitude two meters downstream from the channel exit. The explicitly coupled kinetic and hybrid PIC models are well suited for the computation of a HEMP-T and its plume expansion, but they disregard the coupling of channel and plume plasmas for which other methods are necessary. For this purpose a new approach is presented with a proof-of- principle validation. The limited spatial resolution in the plume can be overcome with the mesh-coarsening method, which increases the resolution in regions of low plasma density without numerical artifacts. Sub-cycling for the electrons in the plume can then be used to increase the temporal resolution in the plume. The combination of both methods, called the sub-cycling mesh-coarsening (SMC) algorithm in the scope of this work, promises high savings in computational cost which can make a combined simulation of plume and channel plasmas feasible.

Recent climate change and its consequences for living organisms constitute one of the greatest problems of our century. Global warming entails an increase in mean temperature and the frequencies of extreme weather events. Those changes in environmental conditions affect both plants and animals. Because of their inability to escape from unsuitable environments, plants have evolved a wide spectrum of molecular programs to protect themselves against changing conditions. Responding on altered environmental conditions will change plants chemical composition and therefore also affect plants interaction with other species (e.g., predator-prey or symbiotic relationships). For instance, changes in the chemical composition of plants may influence the survival of associated herbivores. In other words, these herbivores will be affected indirectly by climate change due to changes in the suitability / quality of their food. The aim of this doctoral thesis was to discover the effects of climate change within the relationship of the butterfly Pieris napi and its host plant (Sinapis alba used here as host plant), including individual conditions (e.g. chemical compositions of plants; morphology, physiology of the butterfly) and behavior of female butterflies and larvae. In the first experiment, the influence of simulated climate change on the chemical composition of the plant Sinapis alba was investigated. The second experiment aimed to examine the influence of changes in plant composition on the butterfly P. napi. Glucosinolates (secondary compound of plants) are known to have an important effect on the preference and performance of herbivores. Therefore, in the third experiment, the impact of glucosinolates on the preference and performance of P. napi was investigated in order to see if these plant compounds had the most important influence on this butterfly. Furthermore, in the fourth experiment, it was explored whether there is a latitudinal gradient within the species´ responses to changes in its host plant. The fifth and last experiment aimed to examine, if there are general principles across species regarding indirect effects of climate change. Climate change, simulated by different combinations of temperature and water regimes, had an effect on the plant chemistry. The combination of temperature and water availability changed plant composition substantially. Especially the amount of carbon and glucosinolates (here above all sinalbin) in S. alba plants varies between the different treatments and therefore between the different combinations of temperature and water regimes. Regarding glucosinolates, elevated temperatures increased their concentration in leaves, whereas water deficit in combination with higher temperature reversed this pattern. For carbon content, all plants, except those of the control group, showed a decreased amount of total carbon. However, simulated heat waves had no effect on plants, leading to the assumption that the plants were able to recover from heat stress sufficiently during the control phases. Changes in plant composition affected both larvae and females of the butterfly P. napi. Therefore, changed host-plant chemistry alters the plant quality for this herbivore, meaning that plants of different treatments represent different plant qualities defined by their composition. Females of P. napi may be able to differentiate between plant qualities and even show a direct preference. Therefore, glucosinolates seem to act as oviposition stimulants. However, preferring another plant quality with lower amount of glucosinolates suggest that females of this butterfly species were attracted by more than high levels of glucosinolates alone. Larvae fed with different plant qualities performed differently, indicated by smaller wings (lighter bodies) and prolonged development when fed with plants contained higher amount of the glucosinolate sinalbin. It can be assumed that a higher amount of sinalbin decreases the quality of the host plant and therefore lead to these responses. Probably larvae need to shift their resources from growth to detoxification and therewith survival. Furthermore, drought conditions during plant growth seem to reduce the overall negative effects of higher temperatures, lead to an increase of host plant quality. Larvae seem to benefit from feeding on these “double-stressed” plants. Comparison between the results of the preference and performance tests suggests that there might be a mismatch between female preference and larval performance. It seems that the stimulating effect of high concentration of glucosinolates, in this case sinalbin, misdirects females´ decision to less suitable host plants, meaning that the advantage of less competition for larvae come at costs through detoxification. Using Brassica napus plants with genetically fixed glucosinolate levels, it could be demonstrate that there must be other plant components influencing females´ oviposition behavior been seen in the choice experiment with S. alba. The comparison of German and Italian populations to changes in host-plant quality showed fewer differences between countries as expected. However, German and Italian individuals differed in their reaction to altered plant quality, at least in developmental time and larval growth rate. It seems that Italian larvae benefitted from plants grown under higher temperatures, whereas drought-stressed plants affected them negatively. German individuals in contrast seem to benefit only from water stress during plant growth. With regard to the sexes of P. napi, it seems that females respond differently than males to changes in plant quality. Furthermore, the results of the performance test on Bicyclus anynana showed that there might be some general principles for the respond of butterflies to changes of its host plant. B. anynana responded in a similar way to different host plant qualities as P. napi did, meaning that plants grown under higher temperatures and drought conditions seem to be beneficial for the larval performance. In summary, these findings may have important implications for the indirect effects of climate change on this butterfly in natural environments. First, climate change seems to have an impact on the chemical composition of plants. Second, changes in plants caused by increasing temperature and droughts seem to influence the preference and performance of this butterfly. However, there are differences between populations, which seem to be induced by former adaptation. And third, there might be some general principles for the respond of butterflies to changes in their host plants. This thesis focuses only on possible indirect effects of climate change. However, there are direct effects, which may alter the responses of herbivores to changes in their host plant as well. Therefore, further investigations in this linkage and in other plant-herbivore relationships will be necessary to explore how climate change may alter the relationship between herbivores and their hosts.

Background: Physical inactivity is one of the main risk factors for cardiovascular disease, which remains a major cause of death in Germany and around the globe. Thus, investigating prevalences, population trends, high-risk groups, and intervention effects of physical activity (PA) and sedentary time (ST) is highly relevant to public health. To receive reliable data, a key issue in research is to apply an appropriate study design including the carefully considered use of assessments. Otherwise, bias to PA and ST data may be introduced. The present thesis investigates three often overlooked issues related to the impact of measurement on PA and ST research data. The first aim was to examine whether mere measurement alters PA and ST over the course of twelve months (study 1). The second aim was to identify potential socio-demographic and cardiometabolic moderators of the mere-measurement effect (study 2). The third aim was to present design, protocol, and preliminary results of an interim analysis of a randomized controlled trial (RCT) aiming to test whether a video demonstration of PA intensity levels reduces the lack of agreement between self-reported and objectively measured PA (study 3). Methods: Studies 1 and 2 were based on data of a trial to test the feasibility of a brief tailored letter intervention to increase PA and to reduce ST during leisure time. Among a sample of subjects with no history of myocardial infarction, stroke, or vascular interventions, a number of 175 individuals aged 40 to 65 years participated in the study. At baseline, participants received standardized measurement of blood pressure and waist circumference, blood sample taking, and seven-day accelerometry. At baseline and after one, six, and twelve months, participants completed the International Physical Activity Questionnaire (IPAQ). A random subsample received a brief tailored letter intervention at months one, three, and four. A number of 153 participants were included in study 1 using all available data across 12 months. Changes in PA and ST were analyzed using latent growth modeling. For study 2, baseline and one-month follow-up data of 175 participants were used. Dependence of one-month changes in PA and ST on socio-demographic and cardiometabolic variables was analyzed using linear regression models. In study 3, individuals aged between 40 and 75 years were recruited at a shopping mall in Greifswald, Germany. Participants received seven-day accelerometry and were invited to the cardiovascular examination center of the University Medicine Greifswald. After random allocation to experimental and control group, they completed the selfadministered IPAQ – Short Form via tablet-computer. The experimental group additionally received a video demonstration of PA intensity levels before answering the questionnaire. A number of 131 participants were analyzed to receive preliminary results of an interim analysis in order to verify the presumptions made for the a priori power calculation and to decide on early stopping of the study. The difference between the study groups in the agreement between self-reported and accelerometer-based PA was analyzed using a two-sample t-test. Results: In study 1, results revealed no change in leisure-time PA, an increase in transportrelated PA (p = .023), and a tendency towards a reduction of ST (p = .060) between baseline and one-month assessment. Further, ST decreased between six and twelve months (p = .037). Time trends of the intervention group did not differ significantly from those of the assessment-only group. Results of study 2 revealed that men increased transport-related PA more than women (p = .031) and men with higher triglycerides increased transport-related PA less than men with lower triglycerides (p = .043). Men with higher systolic blood pressure reduced ST more than those with lower systolic blood pressure (p = .028). However, this linear association ceased to exist at a level of approximately 145 mmHg. A similar relationship was found for glycated hemoglobin and ST in men. In study 3, preliminary results of the interim analysis revealed a lower formal mean difference in the video group (M = 21.8 min/day, SD = 108.9) compared to the control group (M = 41.0 min/day, SD = 117.4, t(129) = 0.97, p = .166). The p-value lay between the significance (p < .010) and futility (p > .269) boundaries of the test simulations. Conclusions: Results of the present thesis have three implications for considering the impact of PA and ST assessments in cardiovascular research. First, mere-measurement effects within a feasibility trial were found in transport-related PA and ST suggesting to interfere with potential intervention effects. Thus, measurement effects should be considered when planning studies and interventions and when interpreting outcomes. Second, male sex and more favorable triglycerides levels in men were associated with a higher increase of transportrelated PA whereas worse health in men was associated with a higher reduction of ST. Thus, using the mere-measurement effect for prevention purposes may require researchers and practitioners to tailor PA and ST intervention components to individuals’ health condition. Third, the design and protocol of the RCT seems appropriate to test the effect of a novel video on the gap between self-reported and accelerometer-based PA. Preliminary results point to the efficacy of the video.

A common task in natural sciences is to describe, characterize, and infer relations between discrete objects. A set of relations E on a set of objects V can naturally be expressed as a graph G = (V, E). It is therefore often convenient to formalize problems in natural sciences as graph theoretical problems. In this thesis we will examine a number of problems found in life sciences in particular, and show how to use graph theoretical concepts to formalize and solve the presented problems. The content of the thesis is a collection of papers all solving separate problems that are relevant to biology or biochemistry. The first paper examines problems found in self-assembling protein design. Designing polypeptides, composed of concatenated coiled coil units, to fold into polyhedra turns out to be intimately related to the concept of 1-face embeddings in graph topology. We show that 1-face embeddings can be canonicalized in linear time and present algorithms to enumerate pairwise non-isomorphic 1-face embeddings in orientable surfaces. The second and third paper examine problems found in evolutionary biology. In particular, they focus on inferring gene and species trees directly from sequence data without any a priori knowledge of the trees topology. The second paper characterize when gene trees can be inferred from estimates of orthology, paralogy and xenology relations when only partial information is available. Using this characterization an algorithm is presented that constructs a gene tree consistent with the estimates in polynomial time, if one exists. The shown algorithm is used to experimentally show that gene trees can be accurately inferred even in the case that only 20$\%$ of the relations are known. The third paper explores how to reconcile a gene tree with a species tree in a biologically feasible way, when the events of the gene tree are known. Biologically feasible reconciliations are characterized using only the topology of the gene and species tree. Using this characterization an algorithm is shown that constructs a biologically feasible reconciliation in polynomial time, if one exists. The fourth and fifth paper are concerned with with the analysis of automatically generated reaction networks. The fourth paper introduces an algorithm to predict thermodynamic properties of compounds in a chemistry. The algorithm is based on the well known group contribution methods and will automatically infer functional groups based on common structural motifs found in a set of sampled compounds. It is shown experimentally that the algorithm can be used to accurately predict a variety of molecular properties such as normal boiling point, Gibbs free energy, and the minimum free energy of RNA secondary structures. The fifth and final paper presents a framework to track atoms through reaction networks generated by a graph grammar. Using concepts found in semigroup theory, the paper defines the characteristic monoid of a reaction network. It goes on to show how natural subsystems of a reaction network organically emerge from the right Cayley graph of said monoid. The applicability of the framework is proven by applying it to the design of isotopic labeling experiments as well as to the analysis of the TCA cycle.

Mathematical phylogenetics provides the theoretical framework for the reconstruction and analysis of phylogenetic trees and networks. The underlying theory is based on various mathematical disciplines, ranging from graph theory to probability theory. In this thesis, we take a mostly combinatorial and graph-theoretical position and study different problems concerning phylogenetic trees and networks. We start by considering phylogenetic diversity indices that rank species for conservation. Two such indices for rooted trees are the Fair Proportion index and the Equal Splits index, and we analyze how different they can be from each other and under which circumstances they coincide. Moreover, we define and investigate analogues of these indices for unrooted trees. Subsequently, we study the Shapley value of unrooted trees, another popular phylogenetic diversity index. We show that it may fail as a prioritization criterion in biodiversity conservation and is outcompeted by an existing greedy approach. Afterwards, we leave the biodiversity setting and consider the Shapley value as a tree reconstruction tool. Here, we show that non-isomorphic trees may have permutation-equivalent Shapley transformation matrices and identical Shapley values, implying that the Shapley value cannot reliably be employed in tree reconstruction. In addition to phylogenetic diversity indices, another class of indices frequently discussed in mathematical phylogenetics, is the class of balance indices. In this thesis, we study one of the oldest and most popular of them, namely the Colless index for rooted binary trees. We focus on its extremal values and analyze both its maximum and minimum values as well as the trees that achieve them. Having analyzed various questions regarding phylogenetic trees, we finally turn to phylogenetic networks. We focus on a certain class of phylogenetic networks, namely tree-based networks, and consider this class both in a rooted and in an unrooted setting. First, we prove the existence of a rooted non-binary universal tree-based network with n leaves for all positive integers n, that is, we show that there exists a rooted non-binary tree-based network with $n$ leaves that has every non-binary phylogenetic tree on the same leaf set as a base tree. Finally, we study unrooted tree-based networks and introduce a class of networks that are necessarily tree-based, namely edge-based networks. We show that edge-based networks are closely related to a family of graphs in classical graph theory, so-called generalized series-parallel graphs, and explore this relationship in full detail. In summary, we add new insights into existing concepts in mathematical phylogenetics, answer open questions in the literature, and introduce new concepts and approaches. In doing so, we make a small but relevant contribution to current research in mathematical phylogenetics.

In recent years, negative impact of pharmaceutical products on natural environment became an issue of high public interest. Pharmaceutical residues are detected in various ecosystems worldwide. Due to increasing production and consumption of medicines this problem is intensified. Therefore, an efficient way to restrain release into the world’s water system is required. This work presents an enzymatic approach for the degradation of pharmaceuticals in wastewater treatment plants, using laccase and cytochrome P450 — two enzymes of high biotechnological and industrial potential. Laccase genes from fungi Trametes versicolor and Pycnoporus cinnabarinus were isolated and overexpressed in the non-conventional yeast Arxula adeninivorans. This organism served also as cytochrome P450 gene donor. Recombinant laccase Tvlcc5 was purified by immobilized-metal ion affinity chromatography and biochemically characterized using 2,2'-azino-bis(3-ethylbenzothiazoline-6-sulfonic acid) (ABTS) as substrate for enzyme activity assays. The optimal temperature and pH were found to be 50 °C and 4.5–5.5, respectively. The half-life of Tvlcc5 at 60 °C was around 20 min. It was demonstrated that the presence of copper ions is essential for the synthesis of active protein. Moreover, negative impact of chloride anions on laccase activity was shown. Cultivation conditions for the Tvlcc5 producing strain A. adeninivorans G1212/YRC102-TEF1-TVLCC5-6H were optimized. It was found that maintaining the pH at a constant level between pH 6.0 and 7.0 is essential for the production of active enzyme. Optimal cell growth and laccase accumulation were reached at 20 °C and in medium supplemented with 0.5 mM CuSO4. Performed fed-batch cultivation resulted in a laccase activity of 4986.3 U L-1. Factors influencing the synthesis of Tvlcc5 leading to increased production of this protein were investigated. It was found that using three non-native signal peptides (cutinase 2 from A. adeninivorans (ACut2), α-mating factor from S. cerevisiae (MFα), and acid phosphatase from P. pastoris (PHO1) signal peptides) enhances the secretion of active enzyme by 20–80%. Besides that, additional overexpression of copper transporters positively affects laccase production. Finally, it was proven that recombinant Tvlcc5 is a promising agent for the degradation of certain pharmaceuticals. After 24 h of incubation, the concentration of diclofenac and sulfamethoxazole decreased to 46.8% and 51.1%, respectively. Furthermore, it was shown that the addition of the redox mediator ABTS significantly shortens the degradation time of these substances.

An experimental investigation of particle parallel flows has been carried out at Wendelstein 7-X (W7-X), one of the most advanced stellarators in the world. The studies are restricted to the outermost plasma region, the scrape-off layer (SOL), which is shaped to tackle the exhaust problem in vision of future fusion reactors based on plasma magnetic confinement. The aim of the measurements is to set the basis for a physics analysis of the SOL dynamics by obtaining direct information on convective heat transport, together with the assessment of the predominant flow directions of the main plasma ions and of fusion-products or wall-released impurities. In this way, a better comprehension of the interplay between the transport parallel and perpendicular to the SOL field lines can be achieved, contributing to the understanding of the effectiveness of the island divertor configuration. The chosen instrument for the experimental studies is the Coherence Imaging Spectroscopy (CIS) diagnostic, a camera-based interferometer capable of measuring 2D Doppler particle flows associated with a selected visible line from the plasma. The diagnostic is distinguished by its high time resolution and spatial coverage, allowing the visualisation and measurements of flow velocities for a full module of W7-X simultaneously. A CIS diagnostic has been fully designed for W7-X with an improved level of accuracy achieved thanks to the implementation of a new calibration source, a continuous-wave-emission tunable laser. The laser allowed a full characterization of the diagnostic and a frequent precise calibration, making the CIS system reliable for parallel flow investigations during the operational campaign OP1.2. The validity and importance of the CIS measurements have been further confirmed with dedicated simulation of the SOL plasma parameters by the EMC3-EIRENE code, and by comparisons with other edge diagnostics. The CIS results show the effects related to dynamical changes in the SOL due to impurity gas puffs or the development of a plasma current. Moreover, CIS can be used as a powerful tool to test the limits of the current theoretical models, for example in the case of forward and reversed field experiments.

This paper is a literary analysis of Sebastian Barry’s six novels “The Whereabouts of Eneas McNulty” (1998), “Annie Dunne” (2002), “A Long Long Way” (2005), “The Secret Scripture” (2008), “On Canaan’s Side” (2011) and “The Temporary Gentleman” (2014) and his two plays “The Steward of Christendom” (1995) and “Our Lady of Sligo” (1998). The analysis focuses on Barry’s presentation of (Irish) history, (Irish) nationalism, and personal and national identity in order to ascertain to what extent Barry can be labelled an Irish historical revisionist and compares Barry’s texts to revisionist fiction by other modern Irish authors to delineate Barry’s vision of a – generally more inclusive - Irish identity.

Barrier corona (BC) arrangements are employed in different plasma-based applications such as material surface and exhaust gas treatments. However, a comprehensive study about the discharge behavior and properties in such strongly asymmetric arrangements is still missing. This dissertation is devoted to the detailed investigation of single microdischarges (MDs) in a sinusoidally driven BC discharge in air at atmospheric pressure. The discharge arrangement consist of a sharp metal pin and a dielectric-covered hemispherical electrode. It is the first study of volume BC discharges, in which phasially-resolved spatio-temporal development of the MDs are recorded using a multi-dimensional time-correlated single photon counting (TC-SPC) technique. The morphology of the MDs is recorded using an ICCD camera. A voltage probe and a current probe are employed to measure the applied voltage and current pulses. Furthermore, phase-resolved current measurements and statistical studies of current pulse amplitudes are realized using an oscilloscope. Due to the asymmetric geometry and material of the electrodes, discharge behavior in the two polarities of the applied sinusoidal voltage is significantly different. For the voltage amplitude being applied, mostly two MDs appear in the anodic pin half-cycles. It is observed that the breakdown mechanism in both MDs is a positive streamer starting near the anode, similar to the single MDs in symmetric dielectric barrier discharges (DBDs). However, the second MDs have different properties, such as longer duration of the bulk plasma and broader current pulses. It is considered that the differences are mainly due to the positive surface charges deposited by the first MDs on the dielectric. It is proposed, for the first time, that the current pulse derivative maximum corresponds to the arrival of the streamer head at the cathode surface. This is used to synchronize the spatio-temporal development of the MDs with their current pulses. The accuracy of the synchronization is limited to the rise-time of the current probe (350 ps). In each cathodic pin half-cycle, only one major MD appears. The appearance and amplitude of the MDs are more erratic compared to the anodic pin polarity. The TC-SPC recordings show that the MDs appearing at low applied voltages have a similar spatio-temporal development to the MDs of the anodic pin polarity. On the other hand, at high applied voltages a development similar to transient sparks, i.e. a double-streamer starting near the tip of the pin (cathode), is observed. The statistical study shows that in DBD-like MDs the current pulse amplitude is not dependent on the appearance phase (or applied voltage), but this is not the case for the transient sparks. Since BC reactors are also used for air cleaning, a set of experiments is done with 35 ppm toluene additive. It is observed that adding toluene results in 500~V lower breakdown voltage. Hence, the discharge in the presence of toluene is operated under over-voltage condition, resulting in stronger MDs in the anodic pin, and earlier-appearing as well as weaker MDs in the cathodic pin half-cycles. The results of this dissertation about the spatio-temporal development and statistical behavior of the single MDs are foreseen to be employed in the study and optimization of plasma reactors, such as "Stacked DBD Reactor," which are developed for exhaust gas and material surface treatment. Furthermore, the results are a benchmark for the study of a novel discharge arrangement with a rotating dielectric electrode.

The global prevalence of kidney diseases has been steadily rising over the last decades. Today, around 10% of the world population suffers from relevant chronic kidney disease. Podocytes are highly specialized and terminally differentiated cells residing in the filtering units of the kidneys, the so-called glomeruli. With their interdigitating foot-processes, these cells are a crucial part of the renal filtration barrier. As podocytes are post-mitotic, injury or loss of these cells results in an impairment of the filtration barrier with subsequent loss of global kidney function. Therefore, the question whether a relevant amount of podocytes can be regenerated and if this regeneration can be influenced is crucial for future therapeutic developments. As in vivo microscopic imaging of podocytes in higher animals like mice or rats is rather challenging, larval zebrafish have been applied as an animal model for podocyte development and kidney filtration. 48 hours post fertilization, zebrafish larvae develop a single filtering glomerulus with a similar morphology and molecular construction to that in mammals. For evaluation of podocyte morphology and filtration, we used transgenic zebrafish strains in which podocytes were labeled with fluorescence proteins. Additionally, podocytes expressed the bacterial enzyme nitroreductase fused to the fluorescence protein mCherry. In this model, application of the antibiotic metronidazole leads to podocyte-specific cell death. Through cross-breeding we established strains that additionally express an eGFP-labeled protein in the blood plasma. Using in vivo two-photon microscopy, we could image podocyte-loss induced impairments of the glomerular filtration barrier. Additionally, we tracked characteristic morphological changes of podocyte morphology including podocyte foot process effacement, development of sub-podocyte pseudocysts and finally detachment of whole cells from the glomerular basement membrane. These changes have been before described histologically in different animal models as well as in patient biopsies. Using the in vivo microscopy approach, we could clearly describe the temporal sequence of these alterations. Finally, we also tracked individual, non-detached podocytes over up to 24 hours, and found that these cells were non-migratory. These results show that early podocyte-regeneration through immigration of intra- or extraglomerular cells is unlikely within the first 24 hours of acute glomerular injury.

Herpesviruses are enveloped DNA viruses which are dependent on two fusion steps for efficient replication in the host cell. First, they have to fuse their envelope with the cellular plasma membrane or with the vesicle membrane after endocytic uptake to enter the host cell and second, they have to export the newly generated nucleocapsids from the site of assembly to the cytoplasm by fusion of the primary virion envelope with the outer nuclear membrane (ONM). The main goal of this project was to provide a better understanding of how herpesvirus capsids exit the nucleus. On the one hand this thesis aimed at finding cellular proteins involved in nuclear egress (Paper I), while on the other the focus was on further characterization of the viral nuclear egress complex (NEC, Paper II) and its interaction with the capsid (Paper III). It is the hallmark of viruses, including herpesviruses, to hijack host cell proteins for their efficient replication. Some of those interactions are well characterized, while others might not yet have been discovered. In the last step of the nuclear egress, where the primary virion membrane fuses with the ONM, most likely a cellular machinery is involved. The presented work focused on Torsin, the only known AAA+ ATPase localizing in the endoplasmic reticulum and the perinuclear space (PNS). For this, the effect of overexpression of WT and mutant proteins, as well as CRISPR/Cas9 generated knock-out cell lines, on PrV replication was analyzed. Neither single overexpression nor single knockouts of TorA or TorB had any significant effects on virus titers. However, infection of TorA/B double knockout cells revealed reduced viral titers and an accumulation of primary virions in the PNS at early infection times, indicating a delay in nuclear egress. The process of nuclear egress has been intensively investigated without revealing all its details. To address some of the missing aspects we generated monoclonal antibodies (mAbs) against the NEC and its components (pUL31 and pUL34) for a better visualization of the process in transfected as well as infected cells. These mAbs provide a useful tool for future analyses. The publication of the NEC crystal structure formed the basis for intensive research on the molecular details of the NEC formation and its interaction with the nucleocapsid. Recently, our lab showed that lysine (K) at position 242 in the membrane-distal part of pUL31 is crucial for incorporation of the nucleocapsid into budding vesicles. Replacing K by alanine (A) resulted in accumulations of vesicles in the PNS, while mature capsids were not incorporated. To test whether this is due to electrostatic interference or structural restrictions we substituted K242 by different aa to determine the requirements for nucleocapsid uptake into the nascent primary particles. To analyze whether the defect of pUL31-K242A can be compensated by second-site mutations, PrV-UL31-K242A was passaged and mutations in revertants were analyzed. Different mutations have been identified compensating for the K242A defect. A considerable number of mutations indicates that the NEC is much more flexible than previously thought. Further, we gained information that the K at position 242 is not directly involved in capsid interaction, while it is more likely involved in rearrangements within the NEC coat.

Magnetic nanoparticles have a broad spectrum of biomedical applications including cell separation, diagnostics and therapy. One key issue is little explored: how do the engineered nanoparticles interact with blood components after injection? The formation of bioconjugates in the bloodstream and subsequent reactions are potentially toxic due to the ability to induce an immune response. The understanding of the underlying processes is of major relevance to design not only efficient, but also safe nanoparticles for e.g. targeted drug delivery applications. In this study, we report on maghemite nanoparticles functionalized with citrate-, dextran- and polyethylene glycol coatings and their interaction with the clotting protein fibrinogen. Further, we investigate using biophysical tools (e.g. dynamic light scattering, circular dichroism spectroscopy and quartz crystal microbalance) the interaction of the magnetic nanoparticles–fibrinogen bioconjugates with artificial cell membranes as a model system for blood platelets. We found that fibrinogen corona formation provides colloidal stability to maghemite nanoparticles. In addition, bioconjugates of fibrinogen with dextran- and citrate-coated NPs interact with integrin-containing lipid bilayer, especially upon treatment with divalent ions, whereas PEG-coating reveals minor interaction. Our study at the interface of protein-conjugated nanoparticles and artificial cell membranes is essential for engineering safe nanoparticles for drug delivery applications.

The genus Sphagnum (L.) belongs to the Bryophyte plant division and includes 150 to 400 species. As all mosses Sphagnum has no roots and can hardly regulate its water uptake. As long as enough water is available Sphagnum can grow nearly unlimited while the lower, older parts die off and may accumulate as peat. Single Sphagnum species are able to build up an acrotelm as a hydrological self-regulating mechanism of a bog, a type of intact peatland (mire) only fed by precipitation. Because Sphagnum dominates nearly half of the peatlands in the world, it is one of the globally most important peat formers. Sphagnum biomass is an important raw material for many valuable products, but in a much larger scale Sphagnum is used in its fossil state – as Sphagnum peat. With a consumption of c. 40 million m³ per year globally, Sphagnum peat is the predominant raw material for horticultural growing media. To get Sphagnum biomass it is currently collected from wild populations, to get Sphagnum peat it is extracted from bogs. By far, more peatlands (including bogs) are subjects to drainage for agri- and silvicultural use since centuries, which harms their ecosystem services, including their typical biodiversity, carbon storage capacity, water regulation function and palaeo-environmental archive. In Europe, c. 25 % of all peatlands are used for agriculture, in Germany more than 80 %. Globally drained peatlands cover 0.4 % of land surface but produce 5 % of all anthropogenic greenhouse gas emissions. Sphagnum farming aims to cultivate Sphagnum biomass on rewetted degraded bogs as a new agricultural crop. Sphagnum farming is paludiculture and contributes to the protection of bogs and their peat by conserving the peat body through rewetting and by offering a climate-friendly alternative to fossil peat in horticulture. Next to climate change mitigation, Sphagnum farming has benefits for nutrient retention and biodiversity conservation. This thesis contributes to the development of Sphagnum farming by studying the conditions under which Sphagnum may reach maximal growth. Under (semi)controlled glasshouse conditions, we tested the effects of different water regimes and fertilisation levels on the productivity of various Sphagnum species. On a 1260 m² large irrigated field on cut-over bog in Lower Saxony (Germany) we studied length increase, biomass productivity and tissue nutrient content of Sphagnum over a period of 10 years. Finally, we reviewed all scientific literature and practical experiences with respect to Sphagnum farming worldwide as a first step towards a science-based implementation manual. The main conclusions of our studies are: 1. It is possible to cultivate Sphagnum on rewetted cut-over bog and on rewetted former bog grassland. 2. The rapid establishment of a closed, highly productive Sphagnum lawn requires the deployment of a loose, >1(–5) cm thick Sphagnum layer (80–100 m³ of Sphagnum founder material per hectare) at the start of the growing season (when long frost periods are no longer probable) and adequate water supply. 3. Water table management must be very precise until a dense, well-growing Sphagnum lawn has established. For highest yields the water table should rise with Sphagnum growth and be kept a few centimetres below the Sphagnum capitula. Water supply via open irrigation ditches seems to function better than via subsurface irrigation pipes. 4. Fertilisation does not increase Sphagnum productivity on sites with high atmospheric nitrogen deposition and irrigation with phosphate-rich surface water from the agricultural surroundings. To avoid growth reduction a balanced stoichiometry is important. 5. From all studied species, Sphagnum fallax has the highest productivity. Its fast decomposition and low water holding capacity, however, may make this species less suitable for use in horticultural substrates. 6. Vascular plant cover on Sphagnum production fields can be kept low (<50 % cover) by regular mowing. Higher covers retard Sphagnum growth and reduce its quality for growing media. 7. Pathogenic fungi occurred far more in the glasshouse than in the field and have to be controlled for highest Sphagnum yields. We found Sphagnum vitality and growth rate to be stimulated by high water levels, where Sphagnum is less vulnerable to fungal or algal infection despite high nutrient loads. 8. The rate of Sphagnum biomass accumulation may remain constant over at least 4–5 years after establishing a Sphagnum production field with sufficient water supply. At dry conditions Sphagnum biomass accumulation is lower as a result of lower biomass productivity and higher decomposition rates.

Experience in the construction of optimized stellarators shows the coil system is a significant challenge. The precision necessary allow the generation of accurate flux surfaces in recent experiments affected both cost and schedule negatively. Moreover, recent experiments at Wendelstein 7-X have shown that small field corrections were necessary for the operation of specific desired magnetic configurations. Therefore, robust magnetic configurations in terms of coil geometry and assembly tolerances have a high potential to facilitate swifter and less expensive construction of future, optimized stellarators. We present a new coil optimization technique that is designed to seek out coil configurations that are resilient against 3D coil displacements. This stochastic version of stellarator coil optimization uses the sampling average approach to incorporate an iterative perturbation analysis into the optimization routine. The result is a robust magnetic configuration that simultaneously reproduces the target magnetic field more accurately and leads to a better fusion performing coil configuration.

Tree growth in northern and upper treeline ecotones of the circumpolar boreal forest is generally limited by temperature, i.e., trees grow generally more under warm, and less under cold climatic conditions. Based on the assumption that this relationship between tree growth and climate is linear and stable through time, dendroclimatologists use tree rings as natural archives to reconstruct past temperature conditions. Such tree-ring based reconstructions, together with other natural archives (e.g., ice cores and pollen), constitute our understanding of past climatic conditions that reach beyond modern instrumental records. However, a steadily increasing amount of studies reports a recent reduction or loss of the summer temperature signal for several species and sites of the boreal forest. Such a reduction of temperature sensitivity results in temporally unstable climate-tree growth relationships, which challenges the work of dendroclimatologists by potentially leading to miscalibrations of past climatic conditions. On the upside, this shift in the trees’ climate sensitivity might point to a shift in tree growth-limiting factors and thus serve as an early indicator of climate change impacts. There is evidence that this recent reduction in temperature sensitivity might be caused by the observed strong temperature increase at high latitudes, and thus temperature-induced drought stress. Other potential drivers and amplifiers of this phenomenon are differing microsite conditions (dry vs. wet soils) and factors inherent to trees, like genetic properties or age effects. In this PhD thesis, I systematically assessed the effects of frequently discussed drivers of unstable climate-tree growth relationships (climate change, micro-site effects, genetical predisposition) on two representative species of the boreal forest, white spruce in North America and Scots pine in Eurasia, across various temporal and spatial scales. I used classical (tree-ring width) and more novel (wood density, quantitative wood anatomy) dendrochronological proxies to unravel the effects from annual to sub-monthly resolution. More precisely, in chapter I, white spruce clones were compared to non-clones at two treeline sites in Alaska to test whether their growth patterns differ, and whether white spruce clones are generally suitable for dendroclimatic assessments. Clonal reproduction is frequent at treeline due to harsh conditions, but might lead to competition among individuals due to the close proximity among each other, which in turn might obscure their climatic signal. Second, I tested the effect of warmer and drier climatic conditions on the summer temperature signal of Scots pine in Eurasia (chapter II) and on the growing season moisture signal of white spruce in North America (chapter III), respectively. Temperature-induced drought stress is expected to be the most important driver of unstable climate-growth relationships in the boreal forest. I included several sites across latitudinal (50-150 km) and longitudinal (1,000-2,200 km) gradients to cover large parts of the species’ distribution ranges. Since Scots pine covers a wide range of ecological habitats, I additionally tested the effect of dry and wet micro-site conditions on the summer temperature signal of Scots pine in chapter II. Finally, in chapter IV, a systematic literature review was carried out in order to investigate the distribution of unstable climategrowth relationships in global tree-ring studies, and the usage of such series in climate reconstructions. Furthermore, the scientific impact of these potentially inaccurate climate reconstructions was assessed. In this PhD project, warmer and drier climatic conditions led to temporally unstable climate signals in both Scots pine (chapter II) and white spruce (chapter III), as expected. Unstable climate-growth relationships were found for all tested tree-ring proxies and at all sites in North America, and at most sites in Eurasia. Micro-site effects (chapter II) and clonal growth (chapter I) had no significant effect on the climate sensitivity and high-frequency variability of the tested species, but affected absolute growth. The review (chapter IV) revealed that the phenomenon of unstable climate-growth relationships is globally widespread, and occurs independent of tree species, geographic location, and tree-ring and climate proxies. While reconstructions inferred from these unstable relationships are frequent and respective papers have a high impact, the tree-ring community seems to increasingly recognize the challenge of unstable climate-growth relationships. With these findings, this PhD project helped to shed more light on the frequency, underlying drivers, and the impact of unstable climate-growth relationships in boreal forest trees, as well as underlying reaction processes in trees. Above all, this PhD project suggests that the loss of climate sensitivity is caused by a change of growth limiting factors: temperature limitation seems to be suspended in warmer and drier years for Scots pine in Eurasia, and moisture limitation first arises under warm/dry conditions for white spruce in North America. Due to plastic growth responses in trees, the general assumption in dendroclimatology – that climategrowth relationships are stable through time – seems to be incompatible with the principle of limiting factors (one factors is always most growth limiting). To improve the validity of future climate reconstructions, statistical approaches considering synchronously or changing climatic limiting factors need to be promoted, along with attempts to select the best responding trees from a dataset. Furthermore, a better understanding of nonclimatic factors potentially affecting tree growth (e.g., age, disturbance, soil parameters) is needed. A growth reduction of mature and dominant white spruce trees sampled in this PhD project seems likely under future warming conditions, with series of wood cells being valuable early indicators of climate change effects in white spruce. However, inferences cannot be extended to the entire stand due to the applied sample design. Projected climate warming will probably lead to a further reduction of the summer temperature signal in trees of the northern boreal forest, while wider consequences for forest growth and productivity are unclear.

Being the victim of traumatizing events has consequences that can lead to wellknown mental disorders, such as depression. However, newest studies show that these events do not only affect the victims’ behavior, but also the expression levels of specific genes in their blood and in their brain. Latest research discovered little pieces of RNA in the cells that were long thought to be genetic junk. Nevertheless, these so-called miRNAs can regulate the expression of multiple genes, thus modulating metabolism and cell functioning. The aim of this study was to see if childhood traumatization led to a set of differentially expressed miRNA profiles in the peripheral blood. For this, we used subjects from the SHIP trend cohort, who had previously answered various questionnaires, among them the Childhood Trauma Questionnaire and the Patients Health Questionnaire-9 and analyzed the miRNAs in their blood to find out whether there was an association between the score and the dysregulation of certain miRNAs. Furthermore, we selected 5 different independent variables: PHQ-trend, CTQ score, as well as its subscales Abuse and Neglect, and Major Depressive Disorder lifetime prevalence. The analyses showed a set of up- or downregulated miRNAs in the blood. In a second step, we tried to replicate our results comparing them to results in the literature. Some of the significantly dysregulated miRNAs had previously been described as key players in the pathogenesis of MDD, a few even displaying similar results to ours. The next step was to see if the significant miRNAs had common target genes and if these had been described in the literature as having an influence on MDD, showing positive results. One last step was to see if there were also common biological pathways that were modulated by the differentially expressed miRNA. This analysis did not show promising results since there were almost no brain pathways among the results. For future studies, it will be necessary to validate our results using a clinical sample, such as GANI_MED, where the prevalence of childhood traumatization, as well as MDD, is much higher. By doing this, new possibilities of trauma treatment through modulation of epigenetic pathways could arise. If childhood traumatization leads to a set of dysregulated miRNAs that can end in a positive diagnosis of MDD in adulthood, what effects could have a targeted miRNA therapy on the pathogenesis of these psychiatric disorders?

Reactive species play an essential role in orchestrating wound healing responses. They act as secondary messengers and drive redox-signaling pathways that are involved in the hemostatic, inflammatory, proliferative and remodeling phases of wound healing. Cold plasma produces a profusion of short- and long-lived redox species that promotes wound healing, however, until today, the knowledge of CAP mediated wound healing remained scarce. In this thesis, CAP mediated wound healing mechanism and their effect on extracellular matrix and adhesion molecules have been investigated. To this end, a keratinocyte cell line (HaCaT), skin fibroblast cell line (GM Fbs) and an in vitro coculture model including both HaCaT and GM Fbs at a 2:1 ratio, were employed to investigate the cross talk between these two skin cell types. We examined the impact of CAP on extracellular matrix proteins and cell adhesion molecules in GM Fbs and observed a significant impact of cold plasma treatment on the expression level of collagen moieties, cell adhesion molecule like integrin, cadherin, versican, MMPs as well as extracellular matrix proteins. Moreover, scratch assays with monocultures of HaCaT, GM Fbs and coculture of these two cell types were performed. We detected that, CAP accelerated the migratory capability of HaCaT cells cocultured with fibroblasts. In fact, compared to HaCaT monoculture, a significant acceleration on cell migration was observed in coculture upon CAP treatment. NAC, a potent antioxidant could abrogate this CAP-stimulated cell migration in coculture, further pointing towards the importance of well-orchestrated reactive species in wound healing. To better understand this CAP-mediated effect on cell migration, we examined the signaling pathways involved in tissue homeostasis and regeneration. We checked the HIPPO signaling pathway and observed an upregulation of several signaling molecules at transcriptional level in GM Fbs upon CAP treatment. YAP is the central nuclear executer of HIPPO signaling pathway. YAP was upregulated in both HaCaT cells and GM Fbs. The major downstream effectors of the HIPPO signaling pathway (CTGF and Cyr61) were also upregulated in dermal fibroblasts at both transcriptional and protein level. However, administration of antioxidant NAC inhibited CAP-mediated wound healing and abrogated the gene expression of the HIPPO downstream effectors. These results confirm that the upregulation of YAP-CTGF-CYR61 axis is due to CAP-generated redox species. In HaCaT cells, both CTGF and Cyr61 was minimally transcribed. Even though CTGF was rarely detected in HaCaT cells on the protein level,Cyr61 remained undetected. This again shows the importance of the cross talk between fibroblasts and keratinocytes. The coculture with the inclusion of fibroblasts showed an accelerated migration rate, compared to HaCaT monoculture which specifies a cross talk between these two cell types. Thus, monoculture of HaCaT cells were incubated with CAP-treated and untreated fibroblast conditioned medium. Interestingly, we observed that HaCaT cells exhibited an improved cell migration rate when incubated with CAP-treated fibroblast-conditioned media compared to that observed after incubation with untreated media. Upon investigation, an induction of CTGF and Cyr61 secretion was observed upon CAP treatment in the fibroblast-conditioned media. Furthermore, exposure to recombinant CTGF and Cyr61 could also significantly improve HaCaT cell migration which confirms that CAP mediated accelerated cell migration is due to activation of YAP-CTGF-Cyr61 axis. In conclusion, this study revealed a completely new mechanical insight of CAP mediated wound healing. Along with several other ECM molecules, CAP activates a regenerative signaling pathway i.e., HIPPO signaling pathway in dermal fibroblasts at the onset of wound healing. Dermal fibroblasts drive a paracrine interaction by secreting CTGF and Cyr61 in close vicinity of wound, resulting in accelerated keratinocyte migration and wound healing in coculture.

In modern-day organic synthesis, transitional metal catalysis has become an essential tool-kit to access the biologically significant complex organic scaffolds. The activation profile of these sophisticated catalytic systems in cross-coupling chemistry and ring-closing processes has been well appreciated and frequently employed by the scientific community. The present thesis is describing the results of interdisciplinary research involving medicinal chemistry and transitional metal homogeneous catalysis. A molybdenum mediated process was employed to access 32 unprecedented heterocyclic fused poly sulfur ring containing pentathiepins in moderate to good yields as a part of medicinal chemistry. Biologically significant, such as quinoxaline, pyrazine, pyridine, nicotinamide, quinoline, imdazo-pyrazine, pyrrolo-pyrazine, purine, and pyridine sulfonamide scaffolds were functionalized with pentathiepin unit via multi-step organic synthesis. Essentially, the Sonogashira cross-coupling and(Et4N)2[MoO(S4)2] mediated ring-closing steps were commonly employed in all pentathiepin syntheses. The analytically pure samples were characterized by 1H, 13C, 19F-NMR, FTIR, ESI-MS, CHNS, and X-ray single-crystal diffraction analysis. Notably, all pentathiepins exhibited an ABX3 multiplet pattern between δ: 4.2-4.5 ppm with the integration of 2H for the ethoxy functional group's methylene protons substituted on the five-membered ring of pentathiepin, which was later considered as a fingerprint for pentathiepin formation. The mechanistic investigations via control experiments suggest that the tetra sulfur ring Mo(IV) precursor (Et4N)2[MoO(S4)2] is vital along with elemental sulfur for the pentathiepin formation, and the Mo(IV) complex regenerates in the reaction. Furthermore, For the first time, the GPx1 enzyme inhibitor properties of novel fused heterocyclic pentathiepins were established, where these probes exhibited 9-12 folds higher potency than mercaptosuccinic acid. Notably, <1 µM concentration of quinoxaline, pyrazine, and quinoline fused pentathiepins were potent enough to inhibit 50% of GPx1 enzyme activity. Additionally, cytotoxicity, antimicrobial and antifungal studies were conducted for all pentathiepins. In anticancer investigations, the IC50 concentrations for all pentathiepins were ranging between 0.22 to 4.7 µM. The second half of the thesis introduces a novel water-soluble Pd/PTABS as a potent catalyst for C-X (X = N, O, and S) cross-coupling chloroheteroarenes and halonucleosides. The novel, mild and efficient Pd/PTABS catalytic system was successfully employed at low catalytic loadings (1 mol%) for the amination (C−N), etherification (C−O), and thioetherification (C−S) of chloroheteroarenes at ambient to moderate temperatures. The Pd/PTABS catalyst is well-tolerating various heterocyclic scaffolds, and under the optimized catalytic conditions, various secondary amines, electron-rich or electron-poor phenols, thiophenols, and alkylthiols, were efficiently employed as nucleophilic coupling partners. Notably, the catalyst offered tremendous regio and chemoselectivity with excellent temperature control. Besides, novel sulfones and sulfoximines were prepared from the thioethers obtained via Pd/PTABS. The catalyst was employed efficiently for synthesizing biologically significant known drugs or drug candidates such as alogliptin (anti-diabetic agent), XRK 469 (antitumor agent), and Imuran-Azathioprine (immunosuppressive) in competitive yields. Preliminary DFT investigations were performed, and based on the DFT analysis, the electropositive character of the phosphorous atom in quaternary ammonium salts of PTABS supports the heteroatom directed C−Cl activation hypothesis.

Periodontitis is one of the most prevalent oral diseases worldwide caused by multifactorial interactions between host and oral bacteria. Altered cellular metabolism of host and microbes releases a number of intermediary end-products known as metabolites. Recently, there is an increasing interest in identifying metabolites from oral fluids like saliva to widen the understanding of the complex pathogenesis of periodontitis. It is believed, that some metabolites might serve as indicators toward early detection and screening of periodontitis and perhaps even for monitoring its prognosis in the future. Because contemporary periodontal screening methods are deficient, there is an urgent need for novel approaches in periodontal screening procedures. To this end we associated oral parameters (clinical attachment level, periodontal probing depth, supragingival plaque, supragingival calculus, number of missing teeth, and removable denture) with a large set of salivary metabolites (n=383) obtained by mass spectrometry among a subsample (n=909) of non-diabetic participants of the Study of Health in Pomerania (SHIP-Trend-0). Linear regression analyses were performed in age-stratified groups and adjusted for potential confounders. A multifaceted image of associated metabolites (n=107) with considerable differences according to age groups was revealed. In the young (20-39 years) and middle-aged groups (40-59 years), we found metabolites predominantly associated with periodontal variables; whereas among the older subjects (60 + years), tooth loss was strongly associated with metabolite levels. Metabolites associated with periodontal variables were clearly linked to tissue destruction, host- defence mechanisms and bacterial metabolism. Across all age groups, the bacterial metabolite phenylacetate was significantly associated with periodontal variables. Our results revealed alterations of the salivary metabolome in association with age and oral health status. Among our comprehensive panel of metabolites, periodontitis was significantly associated with the bacterial metabolite phenylacetate, a promising substance for further biomarker research.

Bats belong to the most gregarious and diverse mammals with highly complex social behaviors. Despite extensive research on their ecology and social behavior in some bat species, gained insights are restricted to only few of the more than 1300 species. In the recent past, bats have also become a central topic of a different branch of research: Since the 1990s bats came to the fore of virologists and immunologists due to the bats’ apparent importance as reservoir hosts and vectors of several (mostly tropical) diseases. While this research is focused mainly on emerging infectious diseases linked to bats, and their zoonotic potential, little has been invested regarding the link between disease transmission and bat social systems. In my work, I aim at filling this gap by merging automated daily roosting observations, social network analysis, and a virological screening in Natterer’s bats (Myotis nattereri). In a collaborative approach, my co-workers and I analyzed the social structure of individually marked Natterer’s bats, their astrovirus detection rate and transmission pathways within their colony, as well as roosting interactions between different co-occurring con- and heterospecific bat colonies. We discovered Natterer’s bats to display a very divergent social network structure that contradicts the findings of previous studies on large fission-fusion groups. Contrary to the modular social network structure found in e.g. primates or other bats species, the social network of Natterer’s bats consists of only one highly interconnected community. Moreover, although the close proximity between bat hosts in the colony should strongly promote direct transmission, we found indications that astrovirus infections follow at least partly an indirect transmission pathway via contaminated roost use. Lastly, our results prove that co-occurring con- and heterospecific bat colonies, e.g. as in this study Natterer’s bats, brown long-eared bats and Bechstein’s bats, can influence each other in their roost use by avoiding conspecific roosts and by being attracted towards those of heterospecifics. This holds implication for the transmission of parasites and pathogens within and between different colonies with opportunities for spillovers. To conclude, this multidisciplinary study led to valuable insights in the hitherto hidden mechanisms within and among bat colonies.