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Two decades of research indicate that visual processing is typically enhanced for items that are in the space near the hands (near-hand space). Enhanced attention and cognitive control have been thought to be responsible for the observed effects, amongst others. As accumulating experimental evidence and recent theories of dual-tasking suggest an involvement of cognitive control and attentional processes during dual tasking, dual-task performance may be modulated in the near-hand space. Therefore, we performed a series of three experiments that aimed to test if the near-hand space affects the shift between task-component processing in two visual-manual tasks. We applied a Psychological Refractory Period Paradigm (PRP) with varying stimulus-onset asynchrony (SOA) and manipulated stimulus-hand proximity by placing hands either on the side of a computer screen (near-hand condition) or on the lap (far-hand condition). In Experiment 1, Task 1 was a number categorization task (odd vs. even) and Task 2 was a letter categorization task (vowel vs. consonant). Stimulus presentation was spatially segregated with Stimulus 1 presented on the right side of the screen, appearing first and then Stimulus 2, presented on the left side of the screen, appearing second. In Experiment 2, we replaced Task 2 with a color categorization task (orange vs. blue). In Experiment 3, Stimulus 1 and Stimulus 2 were centrally presented as a single bivalent stimulus. The classic PRP effect was shown in all three experiments, with Task 2 performance declining at short SOA while Task 1 performance being relatively unaffected by task-overlap. In none of the three experiments did stimulus-hand proximity affect the size of the PRP effect. Our results indicate that the switching operation between two tasks in the PRP paradigm is neither optimized nor disturbed by being processed in near-hand space.
Ductal Mucus Obstruction and Reduced Fluid Secretion Are Early Defects in Chronic Pancreatitis
(2018)
Objective: Defective mucus production in the pancreas may be an important factor in the initiation and progression of chronic pancreatitis (CP), therefore we aimed to (i) investigate the qualitative and quantitative changes of mucus both in human CP and in an experimental pancreatitis model and (ii) to correlate the mucus phenotype with epithelial ion transport function.
Design: Utilizing human tissue samples and a murine model of cerulein induced CP we measured pancreatic ductal mucus content by morphometric analysis and the relative expression of different mucins in health and disease. Pancreatic fluid secretion in CP model was measured in vivo by magnetic resonance cholangiopancreatography (MRCP) and in vitro on cultured pancreatic ducts. Time-changes of ductal secretory function were correlated to those of the mucin production.
Results: We demonstrate increased mucus content in the small pancreatic ducts in CP. Secretory mucins MUC6 and MUC5B were upregulated in human, Muc6 in mouse CP. In vivo and in vitro fluid secretion was decreased in cerulein-induced CP. Analysis of time-course changes showed that impaired ductal ion transport is paralleled by increased Muc6 expression.
Conclusion: Mucus accumulation in the small ducts is a combined effect of mucus hypersecretion and epithelial fluid secretion defect, which may lead to ductal obstruction. These results suggest that imbalance of mucus homeostasis may have an important role in the early-phase development of CP, which may have novel diagnostic and therapeutic implications.
Optomechanical (om) systems are characterized by their nonlinear light-matter interaction. This is responsible for unique dynamic properties and allows the detection of a variety of classical and quantum mechanical phenomena on a microscopic as well as on a macroscopic scale. In this work we have studied the dynamic behavior of two laser-driven om systems, the single om cell ("cavity optomechanics / membrane-in-the-middle setup") and a two-dimensional hexagonal array of these cells ("om graphene"). The first case was motivated by the possibility to detect the transition from quantum mechanics to classical mechanics directly on the basis of the dynamic behavior. For this we focus on multistability effects of the optical and mechanical degrees of freedom, that are modeled by harmonic oscillators. Our description is based on the quantum optical master equation, which takes into account the environmental interaction assuming a vanishing temperature. As a consequence of decoherence, the dynamics occur near the semiclassical limit, i.e. it is characterized by quantum fluctuations. The quantum-to-classical transition is realized formally by rescaling the equations of motion. In the classical limit, quantum fluctuations disappear and the mean field equations were evaluated by analytical and numerical methods. We found that classical multistability is characterized by stationary signatures on the route to chaos, as well as by the coexistence of single-periodic orbits for the mechanical degree of freedom. The latter point was extensively evaluated by means of a self-consistent approach. For the dynamics in the quantum regime quantum fluctuations cannot be neglected. For this purpose, the master equation was solved by means of a numerical implementation of the Quantum State Diffusion (QSD) method. Based on Wigner and autocorrelation functions, we were able to show that quantum multistability is a dynamic effect: chaotic dynamics is suppressed and there is a time-dependent distribution of the phase space volume on classical simple-periodic orbits. The results can be interpreted within a semiclassical picture, which makes use of the single QSD quantum trajectory. Accordingly, the quantum-classical transition is explained as a time-scale effect, which is determined by tunneling probabilities in an effective mean-field potential. The subject of the second part of the work is the transport of low-energy Dirac quasiparticles in om graphene, propagating as light and sound waves. For this purpose, we investigated the scattering of a plane light wave by laser-induced photon-phonon coupling planar and circular barriers. The starting point is the om Dirac equation, which results from the continuum approximation of the Hamiltonian description of the two-dimensional array near the semiclassical limit. This work was motivated by the rich and interesting relativistic transport and tunneling phenomena found for electrons in graphene, which now appear in a new way. The reason is the presence of the new spin degree of freedom, which distinguishes the optical and mechanical excitations. In this spin space, the om interaction can be understood as a potential, which in our analysis consists of a time-independent and a time-dependent sinusoidal part. For the first case of a static barrier, the transport is elastic and is characterized by stationary scattering signatures. After solving the scattering problem via continuity conditions we were able to identify different scattering regimes depending on scattering parameters. In addition to relativistic phenomena such as Klein tunneling, simple parameter variation allows to use the barrier as a resonant light-sound interconverter and angle-dependent emitter. For the oscillating barrier, the transport is inelastic and is characterized by dynamic scattering signatures. To solve the time-periodic scattering problem, we have applied the Floquet theory for an effective two-level system. As a result of the barrier oscillation, photons and phonons can get and give away energy portions in the form of integer multiples of the oscillation frequency. The interference of short (classical) and long-wave (quantum) components leads to mixing of the scattering regimes. This allows to use the barrier as a time-periodic light-sound interconverter with interesting radiation characteristics. In addition, we have argued that the oscillating barrier provides the necessary energetic conditions for detecting zitterbewegung.
: An enhanced indoleamine 2,3-dioxygenase 1 (IDO1) activity is associated with an increased
mortality risk in sepsis patients. Thus, the preventive inhibition of IDO1 activity may be
a promising strategy to attenuate the severity of septic shock. 1-methyltryptophan (1-MT)
is currently in the interest of research due to its potential inhibitory effects on IDO1 and
immunomodulatory properties. The present study aims to investigate the protective and
immunomodulatory effects of 1-methyltryptophan against endotoxin-induced shock in a porcine
in vivo model. Effects of 1-MT were determined on lipopolysaccharide (LPS)-induced tryptophan
(TRP) degradation, immune response and sickness behaviour. 1-MT increased TRP and its metabolite
kynurenic acid (KYNA) in plasma and tissues, suppressed the LPS-induced maturation of neutrophils
and increased inactivity of the animals. 1-MT did not inhibit the LPS-induced degradation of TRP
to kynurenine (KYN)—a marker for IDO1 activity—although the increase in KYNA indicates that
degradation to one branch of the KYN pathway is facilitated. In conclusion, our findings provide
no evidence for IDO1 inhibition but reveal the side effects of 1-MT that may result from the proven
interference of KYNA and 1-MT with aryl hydrocarbon receptor signalling. These effects should be
considered for therapeutic applications of 1-MT.
Recent research suggests that the P3b may be closely related to the activation of the locus coeruleus-norepinephrine (LC-NE) system. To further study the potential association, we applied a novel technique, the non-invasive transcutaneous vagus nerve stimulation (tVNS), which is speculated to increase noradrenaline levels. Using a within-subject cross-over design, 20 healthy participants received continuous tVNS and sham stimulation on two consecutive days (stimulation counterbalanced across participants) while performing a visual oddball task. During stimulation, oval non-targets (standard), normal-head (easy) and rotated-head (difficult) targets, as well as novel stimuli (scenes) were presented. As an indirect marker of noradrenergic activation we also collected salivary alpha-amylase (sAA) before and after stimulation. Results showed larger P3b amplitudes for target, relative to standard stimuli, irrespective of stimulation condition. Exploratory post hoc analyses, however, revealed that, in comparison to standard stimuli, easy (but not difficult) targets produced larger P3b (but not P3a) amplitudes during active tVNS, compared to sham stimulation. For sAA levels, although main analyses did not show differential effects of stimulation, direct testing revealed that tVNS (but not sham stimulation) increased sAA levels after stimulation. Additionally, larger differences between tVNS and sham stimulation in P3b magnitudes for easy targets were associated with larger increase in sAA levels after tVNS, but not after sham stimulation. Despite preliminary evidence for a modulatory influence of tVNS on the P3b, which may be partly mediated by activation of the noradrenergic system, additional research in this field is clearly warranted. Future studies need to clarify whether tVNS also facilitates other processes, such as learning and memory, and whether tVNS can be used as therapeutic tool.
Objective: To evaluate the efficacy and tolerability of brivaracetam (BRV) in a severely drug refractory cohort of patients with epileptic encephalopathies (EE).
Method: A multicenter, retrospective cohort study recruiting all patients treated with EE who began treatment with BRV in an enrolling epilepsy center between 2016 and 2017.
Results: Forty-four patients (27 male [61%], mean age 29 years, range 6 to 62) were treated with BRV. The retention rate was 65% at 3 months, 52% at 6 months and 41% at 12 months. A mean retention time of 5 months resulted in a cumulative exposure to BRV of 310 months. Three patients were seizure free during the baseline. At 3 months, 20 (45%, 20/44 as per intention-to-treat analysis considering all patients that started BRV including three who were seizure free during baseline) were either seizure free (n = 4; 9%, three of them already seizure-free at baseline) or reported at least 25% (n = 4; 9%) or 50% (n = 12; 27%) reduction in seizures. An increase in seizure frequency was reported in two (5%) patients, while there was no change in the seizure frequency of the other patients. A 50% long-term responder rate was apparent in 19 patients (43%), with two (5%) free from seizures for more than six months and in nine patients (20%, with one [2 %] free from seizures) for more than 12 months. Treatment-emergent adverse events were predominantly of psychobehavioural nature and were observed in 16%.
Significance: In this retrospective analysis the rate of patients with a 50% seizure reduction under BRV proofed to be similar to those seen in regulatory trials for focal epilepsies. BRV appears to be safe and relatively well tolerated in EE and might be considered in patients with psychobehavioral adverse events while on levetiracetam.
Iodine deficiency disorders (IDD) result from insufficient iodine intake, and may lead to many adverse effects on growth, development and thyroid diseases in humans.
Pakistan is a country with history of iodine deficiency.
Before reunification both parts of Germany were iodine deficient. In the Eastern part, however, due to mandatory iodine prophylaxis adaptation in 1983, the iodine status of the population improved from moderate to mild iodine deficiency. After the reunification of Germany in 1989 “voluntary principle” was adopted leading again to a decrease in iodine intake. Germany and Pakistan present different socioeconomics, cultural values and adaptations to the IDD eradication but have resemblance in history of iodine deficiency. In the recent years Germany has improved in IDD eradication more than Pakistan. The purpose of this research was to study the regional influence on iodine nutritional status of pregnant women in Pakistan and to monitor the effectiveness of the iodine fortification programme in the North-East German population.
Pregnant women data was obtained from randomly selected (public and private) prenatal clinics in five districts of the KPK province of Pakistan. Women visited there for their routine checkup between March and September 2012. Data were obtained from almost 250 pregnant women from each district reaching to a total of 1260 in all five districts.
The SHIP project consists of two population-based cohorts, for which only individuals with German citizenship and main residency in the study area were recruited. In the first SHIP cohort; SHIP-0, individuals aged 20-79 years were selected from population registries by a two-stage cluster sampling method. The net sample (without migrated or deceased persons) comprised 6265 eligible subjects, of which 4308 (response 68.8%) participated between 1997 and 2001. A separate stratified random sample of 8826 adults aged 20-79 years was drawn for SHIP-Trend, of which 4420 subjects participated between 2008 and 2012 (response 50.1%) in SHIP-Trend-0.
All the pregnant women were asked to complete a short interview questionnaire containing the information related to sources and reasons for intake and non-intake of iodized salt. The questionnaire also comprised questions related to knowledge of iodized salt nutrition. Information on the number of previous pregnancies and/or abortions (fetal loss due to various reasons, not including voluntary termination of pregnancy) was also obtained. The gestational age of the pregnant women was determined from the first day of the last regular menstrual period with gestational ages of ≤14.9, 28.9, and ≥29 weeks comprising the first, second, and third trimesters of pregnancy, respectively. For goiter assessment in pregnant women the WHO/UNICEF/IGN recommended palpation method was used. UIC was measured using a modification of the Sandell-Kolthoff reaction with spectrophotometric detection. Evaluation of group iodine status was based on median UIC categories defined by the WHO/IGN. These are: recommended – median 150-249 μg/L; mild iodine deficiency – median <150 μg/L.
For the analysis of monitoring trends of thyroid diseases in SHIP, diagnosed thyroid disorders were assessed by computer-assisted personal interviews. Medication data were obtained online using the IDOM program (online drug-database leaded medication assessment) and classified according to the Anatomical-Therapeutic-Chemical (ATC) classification system.In SHIP population goiter assessment was based on thyroid volume determined with ultrasonography. Goiter was defined as a thyroid volume exceeding 18 mL in women and 25 mL in men. Urinary iodine concentrations were measured from spot urine samples by a photometric procedure. Urinary creatinine concentrations were determined with the Jaffé method. Evaluation of group iodine status was based on median UIC categories defined by the WHO/IGN. The iodine/creatinine ratio was calculated by dividing urinary iodine by urinary creatinine concentrations. Serum TSH, fT3, fT4 levels in SHIP study were measured by an immunochemiluminescent procedure. A method comparison between the two TSH laboratory methods showed only negligible differences. High and low serum TSH levels were based on the reference range established from data for SHIP-0 (0.25 mIU/L - 2.12 mIU/L) and SHIP-TREND-0 (0.49 mIU/L - 3.29 mIU/L) respectively (21,22). Anti-TPO Abs were measured by an enzyme immunoassay in the whole SHIP study. The anti-TPO Abs status was defined as follows: normal < 60 IU/ml in men and < 100 IU/ml in women; increased > 60 IU/ml in men and > 100 IU/ml in women; positive: > 200 IU/ml in both sexes.
Thyroid ultrasonography was performed in SHIP-0 using an ultrasound VST-Gateway with a 5 MHz linear array transducer. In SHIP-Trend-0 ultrasonography was performed with a portable device using a 13-MHz linear array transducer. In both studies intra- and inter-observer reliabilities were assessed before the start of the study and semi-annually during the study. For thyroid volume all inter-observer and inter-device variabilities showed mean differences (±2 SD)of < 5% (<25%). Thyroid volume was calculated as length x width x depth x 0.479 (ml) for each lobe (26). The normal thyroid echo pattern was classified as homogeneous. A homogeneous echo pattern with reduced echogenicity was defined as hypoechogenic. Nodular changes exceeding 10 mm in diameter were defined as thyroid nodules.
Multivariable logistic regression analysis adjusting for age was used to regress the outcome measures (knowledge about IDD, iodized salt intake, UIC <150mIU/L and goiter prevalence) on regional influences (as exposure) in each specific district. These results are presented as odd ratios and their 95% confidence interval.
For the analysis in SHIP, all analyses were standardized by base-weights to account for different sampling probabilities. In SHIP-Trend-0, additionally, inverse probability weights for study participation were calculated, which were multiplied with the base-weights. Differences in median levels between SHIP-0 and SHIP-Trend-0 were tested by median regression models; prevalence differences between SHIP-0 and SHIP-Trend-0 were tested by Poisson regression models.
The majority of pregnant women (88.0%) had no knowledge about IDD. A very high (79%) percentage of pregnant women were not taking iodized salt, out of which 36.6% reported that iodized salt would negatively affect reproduction and for 17.0%, it was too expensive. Iodized salt intake in pregnant women was high in the big cities (Peshawar, Nowshehra) and in the urban areas (27.0%)
In 41.3% of the pregnant women, we observed a UIC of >150mIU/L. The median UIC level for the pregnant women was 131µg/L. The total goiter prevalence in pregnant women was 25.5%. The prevalence of UIC <150mIU/L in pregnant women did not differ between rural and urban areas. The results based on logistic regression analysis shows that the prevalence on knowledge about IDD, iodized salt intake, UIC <150mIU/L, and goiter did not differ in pregnant women between urban and rural areas. In district Lakki Marwat except, the pregnant women from urban residence had higher odds of having knowledge on IDD and iodized salt intake than their rural counterparts.
The prevalence of diagnosed thyroid disorders increased from 7.6% [CI 6.9-8.5] in SHIP-0 to 18.9% [CI 17.6-20.1] in SHIP-Trend-0. Likewise, the prevalence of thyroid medication intake increased from 6.2% [CI 5.5-7.0] to 11.1% [CI 10.1-12.2]. The median urinary iodine excretion levels decreased significantly, which was more pronounced in females than in males. The median iodine-to-creatinine ratio declined in all sex- and age-groups with stronger decrease in females than in males. The prevalence of median urinary iodine excretion levels <100µg/L increased between SHIP-0 and SHIP-Trend-0. Median serum TSH levels increased significantly between SHIP-0 and SHIP-Trend-0, resulting in a right shift of the serum TSH level distribution. The prevalence of high serum TSH levels remained almost stable between SHIP-0 and SHIP-Trend-0. Likewise, the prevalence of low TSH remained almost stable between SHIP-0 and SHIP-Trend-0. The prevalence of increased anti-TPO Abs and positive anti-TPO Abs decreased from SHIP-0 to SHIP-Trend-0 in the whole study population. The prevalence of hypoechogenic thyroid pattern decreased from SHIP-0 to SHIP-Trend-0. The median thyroid volume remained similar between SHIP-0 and SHIP-Trend-0 in the whole study population. Goiter prevalence decreased significantly; more pronounced in males than in females, while the prevalence of thyroid nodules increased between SHIP-0 and SHIP-Trend-0.
In pregnant women in Pakistan due to insufficient awareness campaigns and low literacy ratio in rural areas urinary iodine excretion levels indicate a stable iodine supply, which is still not sufficient. Our results show that rural/urban disparity is affecting the IDD prevention program in rural districts, but not in general. The SHIP data indicate that the improved iodine supply over the past two decades in Germany is paralleled by a reduction in prevalence of IDDs, while no increase was observed in markers of autoimmune thyroid disorders arguing for an optimal iodine supply of the general adult population in Northeast Germany. The increase in prevalence of diagnosed thyroid disorders and the intake of thyroid medication might be because of inappropriate therapeutical decisions which should be made with caution, based on regional TSH reference ranges, its prognostic value, and compliance with treatment.
The platinum(II) complexes carboplatin (CBDCA), cisplatin (CDDP) and oxaliplatin
(1-OHP) are used as anticancer drugs in a large number of tumour chemotherapy regimens.
Many attempts have been made to combine Pt(II)-based chemotherapy with alternative treatment
strategies. One such alternative anticancer approach is known as photodynamic therapy (PDT),
where a non-toxic photosensitizer (PS) produces oxidative stress via the formation of reactive
oxygen species (ROS) after local illumination of the affected tissue. A very promising PS is
5,10,15,20-tetra(m-hydroxyphenyl)chlorin (mTHPC, Temoporfin), which is approved for the treatment
of head and neck cancer in Europe. In the present study, a combination of mTHPC-mediated PDT
and either CBDCA, CDDP, or 1-OHP was applied to five human cancer cell lines from different
tumour origins. Cytotoxicity was determined by the MTT assay and synergistic effects on cytotoxicity
were evaluated by calculation of Combination Indices (CI). Synergy was identified in some of the
combinations, for example, with 1-OHP in three of the tested cell lines but antagonism was also
observed for a number of combinations in certain cell lines. In cases of synergy, elevated ROS levels
were observed after combination but apoptosis induction was not necessarily increased compared
to a treatment with a single compound. Cell cycle analysis revealed a formation of apoptotic
subG1 populations and S phase as well as G2/M phase arrests after combination. In conclusion,
pre-treatment with mTHPC-PDT has the potential to sensitize some types of tumour cells towards
Pt(II) complexes, in particular 1-OHP but synergy is highly dependent on the type of cancer.
Most animals live solitarily, but for some species the benefits of group living outweigh the costs and social communities have evolved. Truly social societies are characterized by cooperation in tasks like foraging, predator defense and brood care. In the most extreme cases, non-reproducing individuals act as helpers and provision offspring of reproducing individuals at the cost of their own reproductive success. This alloparental care is attributed to kin selection that provides the helpers with inclusive fitness benefits. However, how reproductive role is determined and in which ways virgin helpers in a group benefit the community is not always well understood.
Spiders are known to be generalist hunters, which in many cases do not shy away from cannibalism. Thus, most spiders live solitarily. However, in a few species a permanently social lifestyle has evolved in which individuals live together throughout their life, providing an intriguing case of social evolution. These spider communities are characterized by lack of premating dispersal leading to extreme inbreeding, by reproductive skew, in which only a proportion of females reproduce and by cooperative breeding of the reproducing females. It has been assumed that the large proportion of virgin females act as helpers not only in foraging and web maintenance but also during brood care. In the social spider Stegodyphus dumicola brood care involves the intensive task of regurgitation feeding, at which mothers regurgitate their own liquefied body tissue. At the end of brood care, the offspring sucks the mothers dry during matriphagy, leading to the death of brood caring females and a semelparous lifestyle. In the closely related solitarily breeding Stegodyphus lineatus virgin females do not provide brood care. The ability of virgin females in S. dumicola to care for offspring would thus depict an adaptation to sociality and cooperative breeding. I therefore aimed to clarify the role and significance of virgin females in colonies of social spiders and furthermore investigated a possible mechanism of how reproductive role within a colony is determined.
I investigated whether there is differential task participation in a non-reproductive task and the task of brood care among reproducing mothers and virgin females (helpers) in Stegodyphus dumicola. The study provides explicit evidence that brood care – including egg sac care, regurgitation feeding and matriphagy – is performed by mothers as well as by virgin helpers. Virgin females in a colony can thus rightfully be termed allomothers. However, the task participation differed between the reproductive states. While mothers engaged more often in brood care, virgin females were more active in foraging. However, the active provisioning of offspring by the virgin females decreases the motherly workload as is suggested by the extended brood care period in comparison to solitary breeders. The observations on virgin allomaternal care are supported by histological studies on the midgut tissue of brood caring females, which revealed that mothers and virgin helpers undergo comparable morphological changes in preparation of regurgitation feeding. The changes in virgin females correlate to ovarian development that might depict an internal maturation process which sets virgin females in the right state to provide care. The morphological changes in mothers and virgin helpers of S. dumicola are less comprehensive than in the solitarily breeding S. lineatus mothers. This indicates that cooperatively caring females are able to save on their resources, provision offspring for longer and thus are probably able to increase survival of the brood by an extended care period. A surprising consequence of cooperative brood care is the ability of mothers to produce a second viable egg sac, even when the first brood is successful. Mothers of the cooperative breeding S. dumicola can thus depart from the strictly semelparous lifestyle and instead invest part of their resources in a second clutch. This finding identified a new way of how cooperative breeding enhances breeding success of reproducers and thus inclusive fitness for helpers as well, thus adding to the benefits of allomaternal care.
Virgin females did not store significantly lower amounts of lipids in their midgut tissue than mothers, raising the question of how much reproductive role of females is determined by competition for resources during growth, as often assumed. Another possible determinant of female reproductive skew is the characteristic male scarcity in spider colonies, with only about 12 percent of spiders being male. Males are assumed to mature early within a few days and die early, thus leaving late maturing females unmated due to lack of mating partners. However, my studies provided evidence that male maturation is more skewed than expected and males might survive several months. Subadult females did not accelerate molting when an adult male was present, which could further indicate, that male presence is not a limiting factor on reproduction in males. Furthermore, males are able copulate with up to 16 females and did not show e preference for large females during mating trials. Males are thus able to fertilize all females, provided all females mature in time. I therefore suggest, that male scarcity is not major determinant of reproductive skew in females, especially in small and middle-sized colonies in which female maturation might only be moderately skewed.
My studies were able to demonstrate the meaning of the large proportion of unmated females in a colony of the social spider S. dumicola. Virgin helpers support mothers during brood care and thus do not only enhance the brood care period but facilitate mothers to produce multiple clutches. Virgin females are able to care as they undergo similar morphological changes as mothers’ do. This seems to be facilitated by an internal maturation process, indicated by ovarian development and oviposition by virgin females, both of which has never been observed in virgins of the subsocial species. How reproductive role is determined remains unclear, but I was able to exclude male scarcity as a major factor influencing reproductive skew.
Myxomycetes are protists belonging to the super-group Amoebozoa. The traditional taxonomic system, which is now largely outdated by molecular studies, recognizes five orders: Liceales, Trichiales, Physarales, Stemonitales and Echinosteliales. Molecular phylogenies revealed two basal clades: Physarales and Stemonitales (the so-called dark-spored myxomycetes) are the first; the other above-mentioned orders form the second (the bright-spored myxomycetes). However, except for Echinosteliales none of the traditional orders appears to be monophyletic in the traditionally used delimitation. The dark-spored myxomycetes encompass the majority of the described morphospecies. Due to the high genetic divergence in DNA sequences between the bright- and dark-spored myxomycetes, only the latter are considered in this dissertation. Historically myxomycetes have been described as fungi, due to their macroscopically visible fructifications which, though considerably smaller, resemble those of fungi. These fruit bodies provide enough morphological traits to support a morphological species concept with currently ca. 1000 species described. Therefore diversity studies of myxomycetes have been conducted for over 200 years and a substantial body of data on ecology and distribution of these fructifications exist. From these studies myxomycetes are known to form often distinct communities across terrestrial ecosystems with highly specific habitat requirements, such as snowbanks (nivicolous), herbivore dung (coprophilous) or decaying wood (xylophilous). However knowledge on the myxamoebae – the trophic life stage of the myxomycetes – is very scarce. Only recent advances in molecular techniques such as direct species identification based on DNA sequences from environmental samples (ePCR), have made studies of myxamoebae (and other microbes) possible. From these first molecular based studies myxomycetes are currently estimated to account for between 5 to almost 50% of all soil amoebae, and have been shown to be present in a wide variety of soils. To fully take advantage of these new methods, a molecular DNA marker needs to be established as well as a reference sequence database. The usability of a DNA marker gene depends on its ability to separate species by a distinction between intra- and interspecific divergence between sequences of the same and related species, the so-called ‘barcoding gap’.
The first part of this thesis (article I and II) deals with the subject of establishing such a DNA marker and database, and in doing so touches upon the subject of ‘what is a myxomycetes species?’
A total of 1 200 specimens were compiled into a reference database (the largest database to date of dark-spored myxomycetes). The genetic distance from sequence-to-sequence was used to assess genetic clade structures within morphospecies and putative biospecies (sexually isolated linages) were identified. The result was an estimate of hidden diversity, exceeding that of described morphospecies by 99%. The optimum sequence similarity threshold for OTU-picking (genetic species differentiation, denoted Operational Taxonomic Unit) with the used SSU marker was identified as 99.1% similarity.
The second part of this thesis (article III and IV) presents ecological studies conducted with NGS (ePCR) in which the established threshold and database are applied and are demonstrated to provide reliable and novel insights into the soil myxamoebae community. It is investigated whether the occurrence of fruit bodies reflects the distribution of soil myxamoebae, and the research questions ‘do myxomycetes show broader realized niches as soil amoebae than as fructifications?’ and ‘are myxamoebae distributions correlated to potential prey organisms (fungi and bacteria)?’ are investigated.
In the ecological study presented in article III parallel metabarcoding of bacteria, fungi and dark-spored myxomycete was used for the first time in a joint approach to analyze the communities from an elevational transect in the northern limestone German Alps (48 soil samples). Illumina sequencing of the soil samples revealed 1.68 Mio sequences of a section of the rRNA gene, which were assigned to 578 operational taxonomic units (OTU) from myxomycetes. These show a high similarity (>98%) to 42 different morphospecies (the respective figures for bacteria and fungi were 2.16/5710/215 and 3.68/6133/260, respectively). Multivariate analyses were carried out to disentangle microbial interplay and to identify the main environmental parameters determining the distribution of myxamoebae and thus setting the boundaries for their ecological niches. Potential interactions between the three target organisms were analysed by integrating community composition and phylogenetic diversity with environmental parameters. We identified niche differentiation for all three communities (bacteria, fungi and myxamoebae) which was strongly driven by the vegetation. Bacteria and fungi displayed similar community responses, driven by symbiont species and plant substrate quality. Myxamoebae showed a more patchy distribution, though still clearly stratified among genera, which seemed to be a response to both structural properties of the habitat and specific bacterial taxa. In addition we find an altitudinal species turn-over for all three communities, most likely explained by adaptation to harsh environmental conditions. Finally a high number of myxomycetes OTUs (associated with the genus Lamproderma) not currently represented in our reference database were found, representing potentially novel species. This study is the first to report niche differentiation between the guild of nivicolous (“snowbank”) myxomycetes and thus fine-scale niche differentiation among a predatory soil protist; identifying both potential food preferences and antagonistic interactions with specific bacterial taxa.
Finally, the second ecological study (article IV) focuses on comparing the distribution of myxamoebae revealed by ePCR of soil samples with fructifications collected from the same area (714 specimens determined to 30 morphospecies, which form 70 unique ribotypes that can be assigned to 45 ribotype clusters using a 99.1% similarity threshold). The study found a strong coherency between the two inventories, though with species specific relative differences in abundance, which can in part be attributed to the visibility of the fructifications. In addition, a year to year comparison of fructification records gives support to the hypothesis that the abundance of fructifications depends strongly on the onset of snowfall in the previous autumn and the soil temperature regime throughout the winter.
In the current era of anthropogenic climate change is the long-term survival of all organisms dependent on their ability to respond to changing environmental conditions either by (1) phenotypic plasticity, which allows species to tolerate novel conditions, (2) genetic adaptation, or (3) dispersal to more suitable habitats. The third option, dispersal, allows individuals to escape unfavorable conditions, the colonization of new areas (resulting in range shifts), and affects patterns of local adaptation. It is a complex process serving different functions and involving a variety of underlying mechanisms, but its multi-causality though has been fully appreciated in recent years only. Thus, the aim of this doctoral thesis was to disentangle the relative importance of the multiple factors relevant to dispersal in the copper butterfly Lycaena tityrus, including the individual condition (e.g. morphology, physiology, behavior) and the environmental context (e.g. habitat quality, weather). L. tityrus is a currently northward expanding species, which makes it particularly interesting to investigate traits underlying dispersal. In the first experiment, the influence of weather and sex on movement patterns under natural conditions was investigated. Using the Metatron, a unique experimental platform consisting of interconnected habitat patches, the second experiment aimed to examine the influence of environmental factors (resources, sun) on emigration propensity in experimental metapopulations. Human-induced global change (e.g. climate change, agricultural intensification) poses a substantial challenge to many herbivores due to a reduced availability or quality of feeding resources. Therefore, in the third experiment, the impact of larval and adult food stress on traits related to dispersal ability was investigated. Additionally, the effect of different ambient temperatures was tested. In the fourth experiment, core (Germany) and recently established edge (Estonia) populations were compared in order to explore variation in dispersal ability and life history traits indicative of local adaptation. Dispersal is often related to flight performance, and morphological and physiological traits, which was investigated in experiments 2-4. Butterflies were additionally subjected to behavioral experiments testing for the individual’s exploratory behavior (experiments 3 and 4).
Males and females differed substantially in morphology, with males showing traits typically associated with a better flight performance, which most likely result from selection on males for an increased flight ability to succeed in aerial combats with rivalling males and competition for females. This pattern could be verified by mobility measures under natural conditions and flight performance tests. Interestingly, although females showed traits associated with diminished flight performance, they had a higher emigration propensity than males (though in a context dependent manner). Reasons might be the capability of single mated females to found new populations, to spread their eggs over a wide range or to escape male harassment. Conditions indicative of poor habitat quality such as shade and a lack of resources promoted emigration propensity. The environmental context also affected condition and flight performance. The presence of resources increased the butterflies’ condition and flight performance. Larval and adult food stress in turn diminished flight performance, despite some reallocation of somatic resources in favor of dispersal-related traits. These detrimental effects seem to be mainly caused by reductions in body mass and storage reserves. A similar pattern was found for exploratory behavior. Furthermore, higher temperatures increased flight performance and mobility in the field, demonstrating the strong dependence of flight, and thus likely dispersal, on environmental conditions. Flight performance and exploratory behavior were positively correlated, probably indicating the existence of a dispersal syndrome. The population comparison revealed several differences between edge and core populations indicative of local adaptation and an enhanced dispersal ability in edge populations. For instance, edge populations were characterized by shorter development times, smaller size, and a higher sensitivity to high temperatures, which seem to reflect adaptations to the cooler Estonian climate and a shorter vegetation period. Moreover, Estonian individuals had an enhanced exploratory behavior, which can be advantageous in all steps of the dispersal process and may have facilitated the current range expansion.
In summary, these findings may have important implications for dispersal in natural environments, which should be considered when trying to forecast future species distributions. First, dispersal in this butterfly seems to be a highly plastic, context-dependent trait triggered largely by habitat quality rather than by individual condition. This suggests that dispersal in L. tityrus is not random, but an active process. Second, fast development and an enhanced exploratory behavior seem to facilitate the current range expansion. But third, while deteriorating habitat conditions are expected to promote dispersal, they may at the same time impair flight ability (as well as exploratory
behavior) and thereby likely dispersal rates. For a complete understanding of a complex process such as dispersal, further research is required.
Functional characterization of a novel protease isolated from a mouse-adapted S. aureus strain
(2018)
Background: The high incidence of methicillin-resistant Staphylococcus aureus
(MRSA) strengthens the need for new effective antibiotics and a protective vaccine. Up till now, mainly human-adapted Staphylococcus aureus strains were used to study S. aureus pathogenicity in mouse models. However, it is known that S. aureus is highly host-specific. Recently, a mouse-adapted S. aureus strain, JSNZ, was identified. This strain could be a promising tool in developing more appropriate infection models. JSNZ produces high amounts of a putative extracellular protease, named JSNZ extracellular protease (Jep). Since the jep gene was only detected in S. aureus isolates from laboratory mice and wild small rodents and shrews, we hypothesize that Jep is important for colonization and infection in mice. The jep deletion mutant previously created by our collaborators from the University of Auckland, New Zealand, intriguingly showed a reduced survival and growth fitness in murine serum and whole blood as compared to the JSNZ wild type (WT) strain.
Objective: To elucidate the role of Jep in the interaction between S. aureus and its
host by comparing the impact of JSNZ WT with a mutant and a complement strain on the murine immune system. In addition, the elucidation of possible genetic factors behind host-adaptation of S. aureus strains isolated from wild rodents and shrews.
Methods: A jep complemented strain was generated by chromosomal replacement.
JSNZ WT, the jep mutant and the complement strain were subjected to functional
assays (whole blood survival assay, coagulation assay). In addition, the genetic
background that might confer host specificity was tested by staph array genotyping.
Results: The mutant strain JSNZDjep was successfully complemented with the jep
gene using a chromosomal integration approach. The WT strain and the
complemented strain produced the Jep protein in comparable amounts.
Unexpectedly, the complemented strains did not behave like the WT strain but rather like the mutant in a series of in vitro assays. Firstly, the growth of both the deletion mutant and the complemented strains was slightly reduced in TSB as compared to the WT strain. Secondly, the jep knockout strain showed a strongly reduced survival in murine whole blood compared to its wild type counterpart, but so did the complemented strain. Finally, the coagulation of murine plasma was less pronounced for the jep deletion mutant and the complemented strain as compared to the JSNZ WT. To exclude a defect in jep gene expression, we compared the amount of Jep expressed during growth in TSB medium for the three strains. The complemented strain produced Jep in a manner similar to the WT strain in a growth-phase dependent manner, suggesting that Jep expression was not affected during the creation of the complemented strain.
The array data showed some differences in the genetic makeup between animal
isolated strains and matched human strains. For example, while all animal isolates of the CC88 lacked the resistance mecA gene it was found in some human isolates of the same strain.
Conclusion: In conclusion, our unidentified mutation created during the generation
of the jep knock-out strain rather than the jep gene itself manipulated the murine
immune response. The responsible gene and the underlying mechanisms remain to
be clarified. Genetic profiling of S. aureus strains allowed us to obtain some valuable information including data about CC49, the most frequently isolated lineage in wild rodents and shrews where compared to the human isolates the murine strains showed clear signs of host adaptation. However, the analysis had several limitations including the small sample size.
Class I and class II glutaredoxins (Grxs) are glutathione (GSH)-dependent proteins, that function as oxidoreductases (class I) or mediate cellular iron trafficking (class II). Some members of class I Grxs like human Grx2 are able to complex a [2Fe-2S] cluster and form a dimeric holo complex, which renders them catalytically inactive and is the basis for their function as redox sensors. Class II Grxs like human Grx5 also complex [2Fe-2S] clusters, however these proteins transfer the clusters to other proteins. Both functionally distinct classes share a similar thioredoxin fold and conserved interaction sites for the non-covalently binding of GSH, which is required to complex the [2Fe-2S] cluster. Furthermore, the proteins from both classes contain a highly nucleophilic active site cysteine that would allow both classes to catalyze GSH-dependent oxidoreduction reactions. Despite of these similar features, only class I Grxs are able to form a mixed disulfide with GSH and to reversibly transfer it to protein thiols (de-/glutathionylation). Interestingly, neither class I Grxs nor class II Grxs can effectively compensate the loss of an essential member of the other class. Even though some structural differences were described earlier, the basis for their different functions remained unknown. In particular, the lack of catalytic activity of class II Grxs as oxidoreductases could not be explained. Here, we demonstrate that the different conformations of a conserved lysyl side chain are the molecular determinant of the oxidoreductase or Fe-S transfer activity of class I and II Grxs, respectively. A specific loop structure that is conserved in all class II Grxs determines one lysyl conformation that prevents the formation of a mixed disulfide of the active site cysteinyl thiol with GSH. Using engineered mutants of hGrx2 and hGrx5, we demonstrated that the exchange of the distinct loop between the classes results in a loss of oxidoreductase function of class I hGrx2 and the gain of oxidoreductase activity of class II hGrx5. The altered GSH binding mode also profoundly changes the [2Fe-2S] cluster binding of the engineered mutants and thereby also influences stability of the holo complexes, a pre-determinant for [Fe-S] cluster transfer activity. With the minor shift of 2 Å in a conserved lysyl side chain orientation we were not only able to modify the catalytic activity of two small human mitochondrial proteins, but on a much larger scale also provided evidence for the previously unknown structural basis that determines the function of all class I and class II Grxs.
The oxidoreductase activity of hGrx2 was also analyzed in vivo in a model of doxorubicin cell toxicity. Applying a mass spectrometrical approach, we identified various mitochondrial proteins as targets for redox regulation. Furthermore, our results gave reason to reconsider some common assumptions regarding doxorubicin-induced apoptosis and the protective function of mitochondrial Grx2.
Background and Aims: Gastrointestinal stromal tumors (GISTs) are rare malignancies but the most common mesenchymal tumors of the digestive tract. Recent advances in diagnostic imaging and an increasing incidence will confront us more frequently with stromal tumors. This single center study aimed to characterize GIST patients in terms of tumor location, clinical presentation, metastasis formation, as well as associated secondary malignancies. Methods: In a retrospective study, 104 patients with a histologically confirmed diagnosis of GIST, collected between 1993 and 2011, were characterized for several clinical features. Results: The most common GIST location was the stomach (67.6%) followed by the small intestine (16.2%). Gastrointestinal bleeding (55.8%) and abdominal pain (38.5%) were the most frequently reported symptoms whereas about one-third of patients remained clinically asymptomatic (31.6%); 14.4% of patients had either synchronous or metachronous metastases and there was a significant prevalence also in the low risk group. The proportion of secondary malignant associated neoplasms was 31% in our GIST cohort, among which gastrointestinal, genitourinary tumors, and breast cancer were the most prevalent. Conclusion: There was a considerable risk for metastasis formation and the development of secondary neoplasias that should encourage discussion about the appropriate surveillance strategy after surgery for GIST.
Because Moringa is rich in secondary metabolites and phenolics, we faced a challenge in extracting a pure DNA required for AFLP (the first proposed genotyping method). Later, different DNA isolation methods were tested to overcome the obstacles caused by phenolics and sugars, an AFLP protocol that worked well with the cultivated seedlings at the botanical garden in Greifswald. The markers for the Internal Transcribed Spacer (ITS) were as well tested that showed a monomorphic structure between all samples. Finally, SSR (microsatellite) markers were established. To optimize DNA extraction, the method of Doyle and Doyle was modified and optimized. This is an ideal method for obtaining a non-fragmented DNA that could be used for AFLP. In addition, two other DNA extraction methods; (KingFisher Flex robot using Omega M1130 extraction Kits, and spin columns and 96-plates using Stratec kits). Although we achieved similar results for both Robot kits (Omega) and Stratec kits, the amplification for most of the samples extracted with Robot did not work, therefore the Stratec kit was the method of choice as it has also a lower cost, combined with a high quality of DNA. For ITS, no polymorphism was found for 28 samples of M. peregrina from Sinai (sequences submitted to GenBank). However, since microsatellite markers of M. peregrina were not known, it was a challenge to try a cross amplification from other species with well-known microsatellite primers. Cross-amplification of 16 primers known from the related species M. oleifera was tested, and three multiplex PCR reactions were established after testing different annealing temperatures and different primers concentrations. This included 13 primers out of the 16 investigated markers which gave a reliable band. All methods used for genetic assessments for the different Moringa species are compiled in a comparative review to look for connections between the different Moringa species. For Moringaceae, M. oleifera and M. peregrina are closely related to each other. Both species have slender trunks, with thick, tough bark and tough roots and bilaterally symmetrical flowers with a short hypanthium. All but one SSR markers used in this study are highly informative However, the degree of polymorphy varied considerably within the 13 markers used. The Probability of Identity (PI) for all loci was 2.6 x 10-9 with high resolution. The percentage of polymorphic loci for all populations was 88.5±2.2; figures for single populations were 92.3%, 84.6%, 84.6%, and 92.3% for the wadis WM, WA, WF, and WZ, respectively. The genotype accumulation curve as well demonstrated that 7–8 markers were necessary to discriminate between 100% of the multilocus genotypes. Significant departures from HWE were detected for eight loci (P < 0.001), probably due a high degree of inbreeding within population. The observed (HO) and expected (HE) heterozygosities ranged from 0 to 0.86 and from 0 to 0.81, respectively. However, for the pooled population, excluding the monomorphic locus MO41, HO and HE ranged from 0.069 to 0.742 and from 0.126 to 0.73 with averages of 0.423 and 0.469, respectively. The mean of FST was 0.133, indicating that, due to the long generation time of M. peregrina, there is still relatively little differentiation between the four remaining populations. An analysis of molecular variance (AMOVA) revealed that the old populations of M. peregrina are still genetically diverse where 75% of variance was recorded within individuals and 83% within populations. An analysis with STRUCTURE, varying the parameter K between 1 and 7, revealed the most pronounced genetic structure for K=3, thus uniting the populations from two neighboured wadis (W. Agala and W. Feiran). The three groups seem to be now genetically isolated. (They may be remainders of a formerly contiguous population, especially when considering the change towards a drier climate in Northern Africa within the last 6000 years). Six clones of each two individuals collected from the same wadi were found, pointing to vegetative dispersal via broken twigs, which may have rooted after flash floods. It may be an alternative mode of reproduction under harsh conditions. Our data reveal a low gene flow between three of the four wadis, suggesting that the trees are relictual populations. In general, conservation of populations from the three genetically most diverse wadis and cross-breeding of trees within a reforestation program is recommended as an effective strategy to ensure the survival of M. peregrina at Sinai, Egypt.
In classical models of tumorigenesis, the accumulation of tumor promoting chromosomal aberrations is described as a gradual process. Next-generation sequencing-based methods have recently revealed complex patterns of chromosomal aberrations, which are beyond explanation by these classical models of karyotypic evolution of tumor genomes. Thus, the term chromothripsis has been introduced to describe a phenomenon, where temporarily and spatially confined genomic instability results in dramatic chromosomal rearrangements limited to segments of one or a few chromosomes. Simultaneously arising and misrepaired DNA double-strand breaks are also the cause of another phenomenon called chromoplexy, which is characterized by the presence of chained translocations and interlinking deletion bridges involving several chromosomes. In this study, we demonstrate the genome-wide identification of chromosomal translocations based on the analysis of translocation-associated changes in spatial proximities of chromosome territories on the example of the cutaneous T-cell lymphoma cell line Se-Ax. We have used alterations of intra- and interchromosomal interaction probabilities as detected by genome-wide chromosome conformation capture (Hi-C) to infer the presence of translocations and to fine-map their breakpoints. The outcome of this analysis was subsequently compared to datasets on DNA copy number alterations and gene expression. The presence of chained translocations within the Se-Ax genome, partly connected by intervening deletion bridges, indicates a role of chromoplexy in the etiology of this cutaneous T-cell lymphoma. Notably, translocation breakpoints were significantly overrepresented in genes, which highlight gene-associated biological processes like transcription or other gene characteristics as a possible cause of the observed complex rearrangements. Given the relevance of chromosomal aberrations for basic and translational research, genome-wide high-resolution analysis of structural chromosomal aberrations will gain increasing importance.
This dissertation focusses on the numerical modelling of resonant destabilization of Alfvén eigenmodes by fast ions in fusion plasmas. It especially addresses non-linear simulations of stellarator plasmas in which particle collisions are retained. It is shown that collisions are required for a realistic description of Alfvén waves in plasmas relevant to nuclear fusion.
We start by carefully verifying the implementation of the collision operators into the electromagnetic version of the gyro-kinetic delta-f particle-in-cell code EUTERPE. After these initial benchmarks are completed successfully, the code is in a position to be applied to realistic tokamak and stellarator scenarios.
Since every collision operator needs to fulfil conservation laws, a momentum-conserving version of the pitch-angle scattering operator is implemented. This is in particular important for neoclassical transport simulations aimed at computing flux-surface variations of the electrostatic potential in stellarators.
Using the simplified CKA-EUTERPE model (employing a fixed-mode-structure approximation), we perform non-linear simulations in tokamaks and stellarators. We show that the non-linear dynamics of fast-ion-driven Alfvén eigenmodes is significantly influenced by collisions. They have the potential to enhance the saturation level and to affect the frequency chirping of the modes.
It is thus concluded that collisions play an essential role in determining Alfvén-eigenmode-induced fast-ion transport - an important issue for future fusion devices. In order to address this issue the CKA-EUTERPE model is extended to evolve multiple modes at the same time. First results of this multi-mode version (which enhances the level of realism of the simulations) are shown in the Appendix of the thesis.
Background: Iodine deficiency disorders (IDD) represent a global health threat to individuals and societies. IDD prevention programmes have been introduced in many parts of the world. However, challenges remain, particularly in Europe due to fragmentation and diversity of approaches that are not harmonized. Objectives: This review is dedicated to the public-health impact of IDD prevention programmes. It sums up experiences collected by the EUthyroid consortium so far and provides information on stakeholders that should be involved in actions directed to improve the impact of IDD prevention. Methods: A joint European database for combining registry-based outcome and monitoring data as well as tools for harmonizing study methods were established. Methods for analyzing thyroglobulin from a dried blood spot are available for assessing the iodine status in the general population and at-risk groups. Mother-child cohorts are used for in-depth analysis of the potential impact of mild-to-moderate iodine deficiency on the neurocognitive development of the offspring. A decision-analytic model has been developed to evaluate the long-term effectiveness and cost effectiveness of IDD prevention programmes. Results: EUthyroid has produced tools and infrastructure to improve the quality of IDD monitoring and follows a dissemination strategy targeting policymakers and the general public. There are tight connections to major stakeholders in the field of IDD monitoring and prevention. Conclusions: EUthyroid has taken steps towards achieving a euthyroid Europe. Our challenge is to inspire a greater sense of urgency in both policymakers and the wider public to address this remediable deficit caused by IDD.
Tuberculosis (TB) has tremendous public health relevance. It most frequently affects the lung and is characterized by the development of unique tissue lesions, termed granulomas. These lesions encompass various immune populations, with macrophages being most extensively investigated. Myeloid derived suppressor cells (MDSCs) have been recently identified in TB patients, both in the circulation and at the site of infection, however their interactions with Mycobacterium tuberculosis (Mtb) and their impact on granulomas remain undefined. We generated human monocytic MDSCs and observed that their suppressive capacities are retained upon Mtb infection. We employed an in vitro granuloma model, which mimics human TB lesions to some extent, with the aim of analyzing the roles of MDSCs within granulomas. MDSCs altered the structure of and affected bacterial containment within granuloma-like structures. These effects were partly controlled through highly abundant secreted IL-10. Compared to macrophages, MDSCs activated primarily the NF-κB and MAPK pathways and the latter largely contributed to the release of IL-10 and replication of bacteria within in vitro generated granulomas. Moreover, MDSCs upregulated PD-L1 and suppressed proliferation of lymphocytes, albeit with negligible effects on Mtb replication. Further comprehensive characterization of MDSCs in TB will contribute to a better understanding of disease pathogenesis and facilitate the design of novel immune-based interventions for this deadly infection.
Herpesviruses are a fascinating group of enveloped DNA viruses, which rely on membrane fusion for infectious entry and direct cell-to-cell spread. Compared with many other enveloped viruses, they utilize a remarkably complex fusion machinery. Three conserved virion proteins, the bona fide fusion protein gB, and the presumably gB activating gH/gL heterodimer constitute the conserved core fusion machinery and are believed to drive membrane fusion in a cascade-like fashion. Activation of this cascade in most alphaherpesviruses is proposed to be triggered by binding of gD to specific host cell receptors. The molecular details of this fusion process, however, remain largely elusive. Yet, a detailed mechanistic knowledge of this process would be greatly beneficial for the development of efficient countermeasures against a variety of diseases. In this thesis, the functional relevance of individual components of the essential gH/gL complex of the alphaherpesvirus PrV has been assessed by two different approaches: by reversion analysis (paper II) and site-directed mutagenesis (papers III-V). In contrast to other herpesviruses, gL-deleted PrV is able to perform limited cell-to-cell spread, providing the unique opportunity to passage the entry-deficient virus in cell culture to select for PrV revertants capable of infecting cells gL-independently. This approach already resulted in an infectious gL-negative PrV mutant (PrV-ΔgLPass), in which the function of gL was compensated by formation of a gDgH hybrid protein. Here, the requirements for gL-independent infectivity of a second independent revertant (PrV-ΔgLPassB4.1), were analyzed. Sequencing of the genes encoding for gB, gH and gD, revealed mutations in each of them. By means of a robust infection-free, transfection-based cell-cell fusion assay (paper I), we identified two amino acid substitutions in the gL-binding domain I of gHB4.1 (L70P, W103R) as sufficient to compensate for lack of gL. Two mutations in gB (G672R, ΔK883) were found to enhance fusogenicity, probably by lowering the energy, required for gB refolding from pre- to postfusion conformation. Coexpression of gHB4.1 and gBB4.1 led to an excess fusion, which was completely suppressed by gDB4.1 in the fusion assays. This was surprising since PrV gD is normally not required for in vitro fusion or direct viral cell-to-cell spread, clearly separating this process from fusion during entry, for which PrV gD is essential. The fusion inhibiting effect of gDB4.1 could be attributed to a single point mutation resulting in an amino acid substitution within the ectodomain (A106V). In conclusion, these results indicated that gL is not central to the fusion process, as its function can be compensated for. As found so far, gL-independent infectivity can be realized by compensatory mutations in gH (as in PrV-ΔgLPass) or in gH plus gB (as in PrV-ΔgLPassB4.1). Excessive fusion induced by gHB4.1 and gBB4.1 was counter-regulated by gDB4.1, indicating that the interplay between these proteins is precisely regulated and further implies that gL and gD, despite being not absolutely essential for the fusion process, have important regulatory functions on gH and/or gB.
Both PrV-ΔgLPass mutants had acquired compensatory mutations in gH affecting the predicted gL-binding domain I in gH. By construction of an artificial gH32/98, which lacked the predicted gL-binding domain and was similar to the recently crystallized gH-core fragment present in the gDgH hybrid protein, we identified the N-terminal part of PrV gH as essential for gH function during fusion (paper III). gH32/98 was unable to promote fusion of wild-type gB in fusion assays and led to a total loss of function in the viral context. These results indicated that the gD moiety, present in gDgH, is critical for proper function of the gH-core fragment. We hypothesize that the gD moiety may adopt a stabilizing or modulating influence on the gH structure, which is normally executed by gL and important for interaction of gH with wild-type gB. Remarkably, substitution of wild-type gB by gBB4.1 rescued function of gH32/98 in the cellular and viral contexts. These findings suggest that gBB4.1 has been selected for interaction with “gL-less” gH. In conclusion, these results demonstrated that gL and the gL-binding domain are not strictly required for membrane fusion during virus entry and spread but that compensatory mutations must be present in gB to restore a fully functional fusion machinery. These results strongly support the notion of a functional gH-gB interaction as a prerequisite for membrane fusion.
In addition to the N-terminal domain, we identified the transmembrane domain of PrV gH as an essential component of the fusion machinery, while the cytoplasmic domain was demonstrated to play a modulatory but nonessential role (paper IV). Whereas truncation or substitution of the PrV gH TMD by a gpi-anchor or the analogous sequence from PrV gD rendered gH non-functional, the HSV-1 gH TMD was found to functionally substitute for the PrV gH TMD in cell-cell fusion and complementation assays. Since residues in the TMD which are conserved between HSV and PrV gH but absent in PrV gD, are placed on one face of an α-helical wheel plot, we hypothesize that the gH TMD has an intrinsic property to interact with membrane components such as lipids or other molecules as a requirement for promoting membrane fusion.
In a final study focusing on the function of gH, we identified the N-glycosylation sites utilized by PrV gH, and determined their individual role in viral infection (paper V). PrV gH was found to be modified by N-glycans at five potential glycosylation sites. N-glycans at PrV specific N77 and the highly conserved site N627 were found to be critical for efficient membrane fusion in the fusion assays, and during viral entry and cell-to-cell spread. N627 was further shown to be crucial for proper gH transport and maturation. In contrast, inactivation of N604, conserved in the Varicellovirus genus, enhanced in vitro fusion activity and viral cell-to-cell spread. These findings demonstrated a role of the N-glycans in proper localization and function of PrV gH.
III Reviews
(2018)
Individual white spruce (Picea glauca (Moench) Voss) growth limitations at treelines in Alaska
(2018)
White spruce (Picea glauca (Moench) Voss) is one of the most common conifers in Alaska and various treelines mark the species distribution range. Because treelines positions are driven by climate and because climate change is estimated to be strongest in northern latitudes, treeline shifts appear likely. However, species range shifts depend on various species parameters, probably most importantly on phenotypic plasticity, genetic adaptation
and dispersal. Due to their long generation cycles and their immobility, trees evolved to endure a wide variety of climatic conditions. In most locations, interannual climate variability is larger than the expected climate change until 2100. Thus treeline position is typically thought of as the integrated effect of multiple years and to lag behind gradual climate change by several decades. Past dendrochronological studies revealed that growth of white spruce in Alaska can be limited by several climatic variables, in particular water stress and low temperatures. Depending on how the intensity of climate warming, this could result in a leading range edge at treelines limited by low temperatures and trailing treelines where soil moisture is or becomes most limiting. Climate-growth correlations are the dendrochronological version of reaction norms and describe the relationship between an environmental variable and traits like tree-ring parameters (e.g. ring width, wood density, wood anatomy). These correlations can be used to explore potential effects of climate change on a target species. However, it is known that individuals differ with respect to multiple variables like size, age, microsite conditions, competition status or their genome. Such individual differences could be important because they can modulate climate-growth relationships and consequently also range shifts and growth trends. Removing individual differences by averaging tree-ring parameters of many individuals into site chronologies could be an oversimplification that might bias estimates of future white spruce performance. Population dynamics that emerge from the interactions of individuals (e.g. competition) and the range of reactions to the same environmental drivers can only be studied via individual tree analyses. Consequently, this thesis focuses on factors that might alter individual white spruce’ climate sensitivity and methods to assess such effects. In particular, the research articles included explore three topics:
1. First, clones were identified via microsatellites and high-frequency climate signals of clones were compared to that of non-clonal individuals. Clonal and non-clonal individuals showed similar high-frequency climate signals which allows to use clonal and non-clonal individuals to construct mean site chronologies. However, clones were more frequently found under the harsher environmental conditions at the treelines which could be of interest for the species survival strategy at alpine treelines and is further explored in the associated RESPONSE project A5 by David Würth.
2. In the second article, methods for the exploration and visualization of individual-tree differences in climate sensitivity are described. These methods represent a toolbox to explore causes for the variety of different climate sensitivities found in individual
trees at the same site. Though, overlaying gradients of multiple factors like temperature, tree density and/or tree height can make it difficult to attribute a single cause to the range of reaction norms (climate growth correlations).
3. Lastly, the third article attempts to disentangle the effect of age and size on climate-growth correlations. Multiple past studies found that trees of different Ages responded differently to climatic drivers. In contrast, other studies found that trees do not age like many other organisms. Age and size of a trees are roughly correlated, though there are large differences in the growth rate of trees, which can lead to smaller trees that are older than taller trees. Consequently, age is an imperfect Proxy for size and in contrast to age, size has been shown to affect wood anatomy and thus tree physiology. The article compares two tree-age methods and one tree-size method based on cumulative ring width. In line with previous research on aging and Wood anatomy, tree size appeared to be the best predictor to explain ontogenetic changes in white spruce’ climate sensitivity. In particular, tallest trees exhibited strongest correlations with water stress in previous year July. In conclusion, this thesis is about factors that can alter climate-growth relationships (reaction norms) of white spruce. The results emphasize that interactions between climate variables and other factors like tree size or competition status are important for estimates of future tree growth and potential treeline shifts. In line with previous studies on white spruce in Alaska, the results of this thesis underline the importance of water stress for white spruce.
Individuals that are taller and that have more competitors for water appear to be most susceptible to the potentially drier future climate in Alaska. While tree ring based growth trends estimates of white spruce are difficult to derive due to multiple overlaying low frequency (>10 years) signals, all investigated treeline sites showed highest growth at the treeline edge. This could indicate expanding range edges. However, a potential bottleneck for treeline advances and retreats could be seedling establishment, which should be explored in more detail in the future.
The glioblastoma multiforme (GBM) not only presents the most common tumor of the central nervous system in adults, it is also the most aggressive brain tumor. Although patients suffering from GBM standardly receive a combination of multiple treatments including surgery, radiotherapy and chemotherapy, its prognosis is still poor with a median survival time of only 12-15 months. Therefore, new and effective treatment methods are urgently needed.
A signaling molecule which is both involved in proliferation, migration and invasion of a broad range of healthy and malignant cells is the lipid mediator sphingosine-1-phosphate (S1P). Previous studies have confirmed that sphingosine-1-phosphate (S1P) receptor 1 (S1PR1) is involved in the regulation of proliferation, invasion, metastasis, vascular maturation and angiogenesis of GBM cells, and is closely related to the occurrence and development of tumors. Thus, ACT-209905 (provided by Actelion Pharmaceuticals) as a selective S1PR1 modulator was applied to gain insights into the molecular processes activated by S1PR1 in GBM cells using two human (LN18, U87MG) and one murine (GL261) GBM cell line.
In our in vitro cell viability analyses, we found that ACT-209905 significantly reduced viability of LN18 cells in a concentration dependent manner. A combined administration of ACT-209905 with S1PR2 inhibitors (Compound 16, Compound 16ME – both provided by ONO Pharmaceuticals, and JTE-013 – commercially available) showed a stronger effect than the single administration demonstrating that both S1PR1 and S1PR2 are involved in growth of GBM cells and may interact with each other. Our results also demonstrated that ACT-209905 can induce apoptosis in GBM cells since caspase 3 activity was induced by the S1PR1 modulator which might therefore play an important role in inhibiting the proliferation of GBM cells. Further, we found a significant inhibitory effect of ACT-209905 on the migration and invasion of LN18 and U87MG GBM cells arguing for a participation of S1PR1 signaling in migration and invasion of GBM cells, too. Stimulation of S1P receptors results in the activation of several kinases such as AKT1 and ERK1/2, correspondingly our immunoblot analyses showed a strong activation of both kinases by S1P which was reduced by ACT-209905 in LN18 cells but not in GL261 cells suggesting that different pathways are activated by S1P in these GBM cell lines. Further studies have to be performed to clarify the role of AKT1 and ERK1/2 in the inhibitory effects of ACT-209905 on GBM proliferation, migration and invasion.
Currently, GBM stem cells are discussed as a reason for resistance against the radiochemotherapy and the recurrence of the tumor. Our immunoblot analyses showed that Nestin and CD133, two marker proteins for GBM stem cells, were higher expressed in GBM cells treated with ACT-209905 compared to control or S1P treated LN18 cells. Further investigations in the future might contribute to the elucidation of an involvement of the S1P receptors in the stem cell behavior of GBM cells. Paradoxically to the up-regulation of CD133 and Nestin by ACT-209905, treatment of LN18 stem-like neurospheres with ACT-209905 showed a significant cytotoxic effect of the compound which was even more pronounced in the stem-like neurosphere cells compared to the adherent parental LN18 cells.
Overall, the studies of this work improve our understanding of the complex mechanisms of S1P signaling in GBM cells and might drive the development of its pharmacological modulation as a new therapeutic principle in GBM. Furthermore, an extended knowledge about the molecular effects of ACT-209905 on GBM cells will broaden the understanding for possible future applications and clinical indications.
Background: Levels or fluctuations in the partial pressure of CO<sub>2</sub> (PCO<sub>2</sub>) may affect outcomes for extremely low birth weight infants. Objectives: In an exploratory analysis of a randomized trial, we hypothesized that the PCO<sub>2</sub> values achieved could be related to significant outcomes. Methods: On each treatment day, infants were divided into 4 groups: relative hypocapnia, normocapnia, hypercapnia, or fluctuating PCO<sub>2</sub>. Ultimate assignment to a group for the purpose of this analysis was made according to the group in which an infant spent the most days. Statistical analyses were performed with analysis of variance (ANOVA), the Kruskal-Wallis test, the χ<sup>2</sup> test, and the Fisher exact test as well as by multiple logistic regression. Results: Of the 359 infants, 57 were classified as hypocapnic, 230 as normocapnic, 70 as hypercapnic, and 2 as fluctuating PCO<sub>2</sub>. Hypercapnic infants had a higher average product of mean airway pressure and fraction of inspired oxygen (MAP × FiO<sub>2</sub>). For this group, mortality was higher, as was the likelihood of having moderate/severe bronchopulmonary dysplasia (BPD), necrotizing enterocolitis (NEC), and poorer neurodevelopment. Multiple logistic regression analyses showed an increased risk for BPD or death associated with birth weight (p < 0.001) and MAP × FiO<sub>2</sub> (p < 0.01). The incidence of adverse neurodevelopment was associated with birth weight (p < 0.001) and intraventricular hemorrhage (IVH; p < 0.01). Conclusions: Birth weight and respiratory morbidity, as measured by MAP × FiO<sub>2</sub>, were the most predictive of death or BPD and NEC, whereas poor neurodevelopmental outcome was associated with low birth weight and IVH. Univariate models also identified PCO<sub>2</sub>. Thus, hypercapnia seems to reflect greater disease severity, a likely contributor to differences in outcomes.
In the present study, we investigated whether inter-individual differences in vagally mediated heart rate variability (vmHRV) would be associated with inter-individual differences in empathy and alexithymia. To this end, we determined resting state HF-HRV in 90 individuals that also completed questionnaires assessing inter-individual differences in empathy and alexithymia. Our categorical and dimensional analyses revealed that inter-individual differences in HF-HRV were differently associated with inter-individual differences in empathy and alexithymia. We found that individuals with high HF-HRV reported more empathy and less alexithymia than individuals with low HF-HRV. Moreover, we even found that an increase in HF-HRV was associated with an increase in empathy and a decrease in alexithymia across all participants. Taken together, these findings indicate that individuals with high HF-HRV are more empathetic and less alexithymic than individuals with low HF-HRV. These differences in empathy and alexithymia may explain why individuals with high HF-HRV are more successful in sharing and understanding the mental and emotional states of others than individuals with low HF-HRV.
Intranasal Vaccination With Lipoproteins Confers Protection Against Pneumococcal Colonisation
(2018)
Streptococcus pneumoniae is endowed with a variety of surface-exposed proteins representing putative vaccine candidates. Lipoproteins are covalently anchored to the cell membrane and highly conserved among pneumococcal serotypes. Here, we evaluated these lipoproteins for their immunogenicity and protective potential against pneumococcal colonisation. A multiplex-based immunoproteomics approach revealed the immunogenicity of selected lipoproteins. High antibody titres were measured in sera from mice immunised with the lipoproteins MetQ, PnrA, PsaA, and DacB. An analysis of convalescent patient sera confirmed the immunogenicity of these lipoproteins. Examining the surface localisation and accessibility of the lipoproteins using flow cytometry indicated that PnrA and DacB were highly abundant on the surface of the bacteria. Mice were immunised intranasally with PnrA, DacB, and MetQ using cholera toxin subunit B (CTB) as an adjuvant, followed by an intranasal challenge with S. pneumoniae D39. PnrA protected the mice from pneumococcal colonisation. For the immunisation with DacB and MetQ, a trend in reducing the bacterial load could be observed, although this effect was not statistically significant. The reduction in bacterial colonisation was correlated with the increased production of antigen-specific IL-17A in the nasal cavity. Immunisation induced high systemic IgG levels with a predominance for the IgG1 isotype, except for DacB, where IgG levels were substantially lower compared to MetQ and PnrA. Our results indicate that lipoproteins are interesting targets for future vaccine strategies as they are highly conserved, abundant, and immunogenic.
In an aerobic environment the occurrence of reactive oxygen species (ROS) is a common phenomenon. The diverse roles of ROS in cellular function and in diseases make them a target of interest in many research areas. Substances capable of directly or indirectly reducing the (harmful) effects of ROS are referred to as “antioxidants”. However, the term is applied miscellaneously in the chemical and the biological context to describe different attributes of a substance. In this work the potential of an electrochemical assay to detect different ROS in-vitro was explored. The method was optimized to investigate the radical scavenging activities (antioxidant potential) of trolox and different plant compounds (ascorbic acid, caffeic acid, epigallocatechin gallate, ferulic acid, kaempferol, quercetin, rutin, and Gynostemma pentaphyllum extract) in-vitro. The obtained data was compared to established antioxidant in-vitro assays. Further, the impact of the plant substances on cellular parameters was evaluated with the electrochemical assay and established cell assays.
The optimization of the electrochemical assay allowed the reproducible detection of ROS. The sensor electrode proved differently sensitive towards individual ROS species. The highest sensitivity was recorded for hydroxyl radicals while superoxide and hydrogen peroxide had little impact on the sensor. Extracellular ROS concentrations could be detected from cell lines releasing elevated ROS into the extracellular space. The antioxidant activity of the investigated plant substances could be demonstrated with all in-vitro assays applied. However, the absolute as well as the relative activity of the individual substances varied depending on the experimental parameters of the assays (pH, radical species, phase, detection method).
The plant compounds modified redox related intracellular parameters in different cell lines. However, a direct correlation between intracellular and extracellular effects of the plant compounds could not be established.
The work demonstrates the feasibility to use the electrochemical assay to sense ROS as well as to evaluate the radical scavenging activity of molecules. The in-vitro antioxidant activities demonstrated for the individual plant substances are not reliable to predict the cellular effects of the molecules.
In the 1940s cytochrome P450 monooxygenases have been discovered and have been the focus of many studies ever since. Although they catalyze very interesting reactions that might find applications in the production of fine chemicals or pharmaceuticals, their low activity and stability often reduces their economic value. Both properties, the activity and the stability, are influenced by the uncoupling of the catalytic cycle.
In this PhD thesis, an assay for the screening of activity and uncoupling of cytochrome P450 enzymes was successfully developed. After finding optimal conditions for the assay, concerning pH and enzyme concentration, the uncoupling of cytochrome P450 BM3 and five mutants (F87Y, R47L, Y51F, A82L and T268A) was investigated. With the results obtained, a comparison of data from literature was possible and revealed similarities. Additionally, through negative controls, the reliability of the assay could be further demonstrated. Although other methods have been described for the detection of hydrogen peroxide formation, the combination of NADPH consumption measurement and hydrogen peroxide formation in parallel was new and represents a very good basis for a pre-screening of large mutant libraries, followed by closer investigation of selected variants.
For the investigation of the activity of the CYP11A1 system, consisting of CYP11A1 and Adx and AdR as redox partner system, the expression and purification for all three proteins was investigated first. For the protein CYP11A1 and Adx, good expression levels were achieved, whereas for AdR the protein concentration obtained was very low. The purification of all three proteins was partially accomplished but left room for improvement. Therefore, in the Master thesis of Christopher Grimm, the pH and temperature stability of all three proteins was further investigated in order to improve conditions used for ion exchange chromatography and to investigate possible conditions for in vitro biocatalysis. As unfortunately even with further investigation of the expression of AdR, no improvement was achieved, a whole-cell system was further investigated. Here, the product formation could be increased 8-fold in comparison to the published data, from 0.27% conversion to 2.2% conversion over 24 h by using a different detergent for substrate solubilization, which might have led to a better substrate supply to the enzyme.
Due to the low activity and stability, a different P450 system, the CYP17A1 enzyme, was subsequently investigated, first by in vitro biocatalysis with the human CYP17A1 expressed in E. coli. Therefore, a suitable redox partner system needed to be found for efficient electron supply of the enzyme. In in vitro biocatalysis, in combination with the Pdx/PdR system of P. putida the CYP17A1 enzyme showed the highest conversion with 91% after 24 h. To investigate the activity of the enzyme further, all active site residues in 4 Å proximity to the bound substrate were exchanged with alanine. After expression of the variants, almost no correctly folded protein was obtained for the variants. Also, after investigating different buffers to possibly enhance the stability, no improvements were achieved. Therefore, a whole-cell approach with the bovine enzyme was chosen in order to investigate the activity of the alanine variants. Here the importance of positions N202, R239, G297, E305, and T306A, described in literature to be important for catalytic activity, was confirmed. Most importantly, three positions that alter the regioselectivity of the enzyme were identified. The reaction of the V483A mutant was therefore also further investigated by preparative biocatalysis. Afterwards the new product was separated by preparative HPLC and identified as 16α- hydroxyprogesterone as confirmed by NMR spectroscopy analysis.
In the last part of the thesis, another screening approach for possible high-throughput screening was investigated. In contrast to the other screening approach, here the investigation of the substrate conversion and the hydrogen peroxide formation were optimized for application in droplets. After finding that DCFH-DA was not sensitive enough towards hydrogen peroxide, the AmplifluTM Red probe was used. As both fluorescent products were found to stay in the aqueous phase above pH 7.4, the conditions investigated for the AmplifluTM Red assay were applied and only NADPH to substrate ratio was investigated by using an uncoupling variant, an active variant from literature and the cytochrome P450 BM3 wild-type enzyme. After finding a good ratio, the five variants used for the investigation of the AmplifluTM Red assay were investigated in the same concentration later on found in the droplets (1 cell per 4 pL), and one variant showed improved product formation compared to wild-type. This finding clearly shows the applicability of the assay for high-throughput screening in droplets.
Juvenile Myoclonic Epilepsy Shows Potential Structural White Matter Abnormalities: A TBSS Study
(2018)
Ion thrusters are Electric Propulsion systems used for satellites and space missions. Within
this work, the High Efficient Multistage Plasma Thruster (HEMP-T), patented by the
THALES group, is investigated. It relies on plasma production by magnetised electrons.
Since the confined plasma in the thruster channel is non-Maxwellian, the near-field plume
plasma is as well. Therefore, the Particle-In-Cell method combined with a Monte-Carlo
Collision model (PIC-MCC) is used to model both regions. In order to increase the sim-
ulated near-field plume region, a non-equidistant grid is utilised, motivated by the lower
plasma density in the plume. To minimise artificial self-forces at grid points bordered by
cells of different size a modified method for the electric field calculation was developed in
this thesis. In order to investigate the outer plume region, where electric field and collisions
are negligible, a ray-tracing Monte-Carlo model is used. With these simulation methods,
two main questions are addressed in this work.
What are the basic mechanisms for plasma confinement, plasma-wall-interaction
and thrust generation?
For the HEMP-T the plasma is confined by magnetic fields in the thruster channel, generated
by cylindrical permanent magnets with opposite polarity. Due to different Hall parameters,
electrons are magnetised, while ions are not. Therefore, the dominating electron transport
is parallel to the magnetic field lines. In the narrow cusp regions, the magnetic mirror effect
reduces the electron flux towards the wall and confines the electrons like in a magnetic
bottle. At the anode, propellant gas streams into the thruster channel, which gets ionised
by the electrons creating the plasma. As a result of the electron oscillation between the two
cusp regions, ionisation of the propellant gas is efficient.
The magnetic field configuration of the HEMP-T also influences the plasma potential inside
the thruster channel. Close to the symmetry axis, the mainly axial magnetic field results in
a flat potential. At the inner wall, the field configuration reduces the plasma wall interaction
to only the narrow cusp regions. Here, the floating potential of the dielectric channel wall
and its plasma sheath result in a rather low radial potential drop compared to the applied
anode potential. As a result, the electric potential is rather flat and impinging ions at the
thruster channel wall have energies below the sputter threshold energy of the wall material.
Therefore, no sputtering appears at the dielectric wall. At the thruster exit the confinement
by the magnetic field is weakened and the potential drops with nearly the full anode voltage.
The resulting electric field accelerates the generated ions into the plume and generate the
thrust, but they are also able to sputter surfaces. During terrestrial testing, sputteringat vacuum vessel walls leads to the production of impurities. The amount of back-flux
towards the channel exit is determined by the sputter yield of the vacuum chamber wall. A
large distance between thruster exit and vessel wall reduces the back-flux and smooths the
pattern of deposition inside the thruster channel. Dependent on their material, the evolving
deposited layers can get conductive, modify by this the potential distribution and reduce
the thrust.
For the HEMP-T, ions are mainly generated at high potential close to the applied anode
potential. Therefore, the accelerated ions producing the thrust gain the maximum energy
as observed in experiment. Ions emitted from the thruster into different angles in the
plume contribute mainly to the ion current at angles between 30 ◦ and 90 ◦ . They mainly
originate from ionisation at the thruster exit. The resulting angular distribution of the
ejected ion current is close to the one of the experiment, slightly shifted by about ten
degrees to higher emission angles. In front of the thruster exit, electrons are trapped by
electrostatics forces. This enhanced density allows ionisation and an additional electron
density structure establishes.
What are possible physics based ideas for optimisation of an ion thruster?
An optimised thruster should have a high ionisation rate inside the thruster channel, low
erosion and an ion angular distribution with small contributions at high angles for min-
imised thruster satellite interactions. In experiments, the HEMP-T satisfies already quite
nicely these requests. In the simulations, low erosion inside the thruster channel and angular
ion distributions close to the experimental data are demonstrated. However, the ionisation
efficiency is lower and radial ion losses are larger than in experiment. A possible explanation
of these differences is an underestimated transport perpendicular to the magnetic field lines,
well known for magnetised plasmas.
A successful example for an optimisation using numerical simulations is the reduction of
back-flux of sputtered impurities during terrestrial experiments by an improved set-up of
the vacuum vessel. The implementation of baffles reduces the back-flux towards the thruster
exit and therefore deposition inside the channel. These improvements were successfully im-
plemented in the experiment and showed a reduction of artefacts during long time measure-
ments. This leads to a stable performance, as it is expected in space.
Medical education research has focused almost entirely on the education of future physicians. In comparison, findings on other health-related occupations, such as medical assistants, are scarce. With the current study, we wanted to examine the knowledge-is-power hypothesis in a real life educational setting and add to the sparse literature on medical assistants. Acquisition of vocational knowledge in vocational education and training (VET) was examined for medical assistant students (n = 448). Differences in domain-specific vocational knowledge were predicted by crystallized and fluid intelligence in the course of VET. A multiple matrix design with 3 year-specific booklets was used for the vocational knowledge tests of the medical assistants. The unique and joint contributions of the predictors were investigated with structural equation modeling. Crystallized intelligence emerged as the strongest predictor of vocational knowledge at every stage of VET, while fluid intelligence only showed weak effects. The present results support the knowledge-is-power hypothesis, even in a broad and more naturalistic setting. This emphasizes the relevance of general knowledge for occupations, such as medical assistants, which are more focused on learning hands-on skills than the acquisition of academic knowledge.
One of the major problems in the study of the dynamics of proteins is the visualization of changing conformations that are important for processes ranging from enzyme catalysis to signaling. A protein exhibiting conformational dynamics is the soluble blood protein beta 2-glycoprotein I (beta2GPI), which exists in two conformations: the closed (circular) form and the open (linear) form. It is hypothesized that an increased proportion of the open conformation leads to the autoimmune disease antiphospholipid syndrome (APS). A characteristic feature of beta2GPI is the high content of lysine residues. However, the potential role of lysine in the conformational dynamics of beta2GPI has been poorly investigated. Here, we report on a strategy to permanently open up the closed protein conformation by chemical acetylation of lysine residues using acetic acid N-hydroxysuccinimide ester (NHS-Ac). Specific and complete acetylation was demonstrated by the quantification of primary amino groups with fluoraldehyde o-phthalaldehyde (OPA) reagent, as well as western blot analysis with an anti-acetylated lysine antibody. Our results demonstrate that acetylated beta2GPI preserves its secondary and tertiary structures, as shown by circular dichroism spectroscopy. We found that after lysine acetylation, the majority of proteins are in the open conformation as revealed by atomic force microscopy high-resolution images. Using this strategy, we proved that the electrostatic interaction of lysine residues plays a major role in stabilizing the beta2GPI closed conformation, as confirmed by lysine charge distribution calculations. We foresee that our approach will be applied to other lysine-rich proteins (e.g. histones) undergoing conformational transitions. For instance, conformational dynamics can be triggered by environmental conditions (e.g. pH, ion concentration, post-translational modifications, and binding of ligands). Therefore, our study may be relevant for investigating the equilibrium of protein conformations causing diseases.
We aimed to evaluate the outcome of different treatment modalities for extremity venous thrombosis (VT) in neonates and infants, highlighting the current debate on their best tool of management. This retrospective study took place over a 9-year period from January 2009 to December 2017. All treated patients were referred to the vascular and pediatric surgery departments from the neonatal intensive care unit. All patients underwent a thorough history-taking as well as general clinical and local examination of the affected limb. Patients were divided into 2 groups: group I included those who underwent a conservative treated with the sole administration of unfractionated heparin (UFH), whereas group II included those who were treated with UFH plus warfarin. Sixty-three patients were included in this study. They were 36 males and 27 females. Their age ranged from 3 to 302 days. Forty-one (65%) patients had VT in the upper limb, whereas the remaining 22 (35%) had lower extremity VT. The success rate of the nonsurgical treatment was accomplished in 81% of patients. The remaining 19% underwent limb severing, due to established gangrene. The Kaplan-Meier survival method revealed a highly significant increase in both mean and median survival times in those groups treated with heparin and warfarin compared to heparin-only group (P < .001). Nonoperative treatment with anticoagulation or observation (ie, wait-and-see policy) alone may be an easily applicable, effective, and a safe modality for management of VT in neonates and infants, especially in developing countries with poor or highly challenged resource settings.
Mast cells reside on and near the cerebral vasculature, the predominant site of pneumococcal entry into the central nervous system (CNS). Although mast cells have been reported to be crucial in protecting from systemic bacterial infections, their role in bacterial infections of the CNS remained elusive. Here, we assessed the role of mast cells in pneumococcal infection in vitro and in vivo. In introductory experiments using mouse bone marrow-derived mast cells (BMMC), we found that (i) BMMC degranulate and release selected cytokines upon exposure to Streptococcus pneumoniae, (ii) the response of BMMC varies between different pneumococcal serotypes and (iii) is dependent on pneumolysin. Intriguingly though, apart from a slight enhancement of cerebrospinal fluid (CSF) pleocytosis, neither two different mast cell-deficient Kit mutant mouse strains (WBB6F1-KitW/Wv and C57BL/6 KitW-sh/W-sh mice) nor pharmacologic mast cell stabilization with cromoglycate had any significant impact on the disease phenotype of experimental pneumococcal meningitis. The incomplete reversal of the enhanced CSF pleocytosis by local mast cell engraftment suggests that this phenomenon is caused by other c-Kit mutation-related mechanisms than mast cell deficiency. In conclusion, our study suggests that mast cells can be activated by S. pneumoniae in vitro. However, mast cells do not play a significant role as sentinels of pneumococcal CSF invasion and initiators of innate immunity in vivo.