Doctoral Thesis
Refine
Document Type
- Doctoral Thesis (2) (remove)
Has Fulltext
- yes (2)
Is part of the Bibliography
- no (2) (remove)
Keywords
- nervous system (2) (remove)
Technological advances in light microscopy have always gone hand in hand with unprecedented biological insight. For microbiology, light microscopy even played a founding role in the conception of the entire discipline. The ability to observe pathogens that would otherwise evade human observation makes it a critical necessity and an indispensable tool to infectious disease research. Thus, the aim of this thesis was to optimize, extend, and functionally apply advanced light microscopy techniques to elucidate spatio-temporal and spatio-morphological components of bacterial and viral infection in vitro and in vivo.
Pathogens are in a constant arms race with the host’s immune system. By finding ways to circumvent host-mediated immune responses, they try to evade elimination and facilitate their own propagation. The first study (publication I) demonstrated that the obligate intracellular pathogen Coxiella burnetii is not just able to infect natural killer (NK) cells, but is actually capable of surviving the harsh degradative conditions in the cytotoxic lymphocyte’s granules. Using live-cell imaging of reporter-expressing Coxiella burnetii, the transient NK cell passage was closely monitored to provide detailed spatio-temporal information on this dynamic process in support of a range of static analyses. Bacterial release from NK cells was pinpointed to a time frame between 24 to 48 hours post-infection and the duration of release to about 15 minutes.
The second approach (publications II-V) aimed at shedding light on the greater spatio-morphological context of virus infection. Thus far, most studies investigating the distribution or tropism of viruses in vivo have used conventional immunohistochemistry in thin sections. Omitting the native spatial context of the infection site in vivo inherently bears the risk of incomplete description. While the microscopic tools and sample preparation protocols needed for volumetric 3D immunofluorescence imaging have recently been made available, they had not gained a foothold in virus research yet. An integral part of this thesis was concerned with the assessment and optimization of available tissue optical clearing protocols to develop an immunofluorescence-compatible 3D imaging pipeline for the investigation of virus infection inside its intact spatio-morphological environment (publication II). This formed the basis for all subsequent volumetric analyses of virus infection in vivo presented here. Consequently, this thesis provided a valuable proof of concept and blueprints for future virus research on the mesoscopic scale of host-pathogen interactions in vivo (publications II-V), using rabies virus (RABV; publications II-IV) and the newly-emerged severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2; publication V) as infection models for the nervous system and the respiratory tract, respectively.
Applying and further improving this volumetric 3D imaging workflow enabled unprecedented insights into the comprehensive in vivo cell tropism of RABV in the central (CNS) (publication III) and peripheral nervous system (PNS) (publication IV). Accordingly, differential infection of CNS-resident astrocytes by pathogenic and lab-attenuated RABV was demonstrated (publication III). While either virus variant showed equal capacity to infect neurons, as demonstrated by quantitative image analysis, only pathogenic field RABVs were able to establish non-abortive infection of astrocytes via the natural intramuscular inoculation route. A combined 3D LSFM-CLSM workflow further identified peripheral Schwann cells as a relevant target cell population of pathogenic RABV in the PNS (publication IV). This suggested that non-abortive infection of central and peripheral neuroglia by pathogenic RABV impairs their immunomodulatory function and thus represents a key step in RABV pathogenesis, which may contribute significantly to the establishment of lethal rabies disease.
Finally, utilizing the full volumetric acquisition power of LSFM, a further refined version of the established 3D imaging pipeline facilitated a detailed mesoscopic investigation of the distribution of SARS-CoV-2 in the respiratory tract of the ferret animal model (publication V). Particularly for this newly-emerged pathogen of global concern, in-depth knowledge of host-pathogen interactions is critical. By preserving the complete spatio-morphological context of virus infection in the ferret respiratory tract, this thesis provided the first specific 3D reconstruction of SARS-CoV-2 infection and the first report of 3D visualization of respiratory virus infection in nasal turbinates altogether. 3D object segmentation of SARS-CoV-2 infection in large tissue volumes identified and emphasized a distinct oligofocal infection pattern in the upper respiratory tract (URT) of ferrets. Furthermore, it corroborated a preferential replication of SARS-CoV-2 in the ferret URT, as only debris-associated virus antigen was detected in the lower respiratory tract of ferrets, thus providing crucial information on the spatial distribution of SARS-CoV-2.
Lebenslang persistierende Neurogenese ist ein fester Bestandteil des olfaktorischen Systems bei reptanten Dekapoden („Panzerkrebse“; lat. reptans – kriechend; griech. deca – zehn, podes – Füße). Dabei generiert das deutocerebrale proliferative System über die Larvalphase hinaus neue Neuronen, die in die bestehenden neuronalen Netzwerke der deutocerebralen chemosensorischen Loben (auch „olfaktorische Loben“) integriert werden. Während in zahlreichen Studien die phänotypische Ausprägung, der zelluläre Mechanismus zur Umsetzung adulter Neurogenese und deren regulierende Faktoren umfassend untersucht und zum Teil kontrovers diskutiert wurden, ist über die phylogenetische Verbreitung in anderen Taxa der Malacostraca („Höhere Krebse“; griech. malakos – weich, ostrakon – Schale) nichts bekannt. Daher wurden im Rahmen der vorliegenden Arbeit verschiedene Vertreter aus Malakostrakentaxa mit unterschiedlicher phylogenetischer Position untersucht und unter evolutionären Aspekten diskutiert. Wie gezeigt werden konnte, ist adulte Neurogenese vermutlich ein plesiomorphes Merkmal der Eumalacostraca, welches in Vertretern der Euphausiacea („Leuchtgarnelen“; griech. phausis – Leuchten) und Peracarida („Ranzenkrebse“; griech. pera – Ranzen, karides – kleine Seekrebse) reduziert wurde. In Abhängigkeit von der zugrunde gelegten Verwandtschaftshypothese ist die Reduktion der persistierenden Neurogenese entweder mehrfach unabhängig (konvergent) erfolgt oder ein apomorphes Merkmal eines Monophylums aus Euphausiacea und Peracarida. Dagegen ist innerhalb der Decapoda eine Ausdehnung und strukturelle Erweiterung des deutocerebralen proliferativen Systems feststellbar. Um einen möglichen Zusammenhang zur Komplexität und Bedeutung des olfaktorischen Systems zu überprüfen, wurden zusätzlich die neuroanatomischen Merkmale von Vertretern der Decapoda und der Peracarida (am Beispiel der Amphipoda) vergleichend betrachtet. Dabei konnte innerhalb der Decapoda eine Korrelation zwischen der Entwicklung des deutocerebralen proliferativen Systems und der Evolution des akzessorischen Lobus bei Vertretern der Reptantia sowie dessen Reduktion in der Gruppe der Meiura, zu denen die Vertreter der Brachyura („Echte Krabben“; griech. brachys – kurz, oura – Schwanz) und Anomura („Mittelkrebse“; griech. anomalos – ungleich) gehören, festgestellt werden. Basierend auf diesen Ergebnissen wurden Vermutungen über die im Adultus neu generierten Neuronenklassen und somit über die Funktion adulter Neurogenese aufgestellt. In allen anderen untersuchten Taxa der Malacostraca konnte dagegen keine Korrelation mit der Komplexität des olfaktorischen Systems festgestellt werden.