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Microbial infections can be either caused by a single species or complex multi-species consortia. One of the most prominent opportunistic human pathogens leading to mono- or mixed-species infections is the Gram-negative bacterium Pseudomonas aeruginosa. Understanding the molecular basis of its adaptation to infection-related stresses is an essential prerequisite for the prevention and treatment of P. aeruginosa infections. We therefore employed state-of-the-art proteomics approaches to elucidate the molecular adaptation mechanisms of P. aeruginosa to infection-related conditions. Moreover, structure, function and interaction of complex microbial consortia containing P. aeruginosa and causing catheter-associated urinary tract infections were investigated by metaproteomics analyses. Our investigations revealed that the adaptation of P. aeruginosa during infection is either based on gene expression changes caused by environmental signal integration or by gene mutations leading to a selective advantage in a particular host environment. In study I, investigating the proteome response of P. aeruginosa biofilms to the clinical relevant antibiotic ciprofloxacin, global changes in the protein profile were observed. Ciprofloxacin induced the expression of proteins involved in the Lex-induced SOS-response, drug efflux pumps and gene products of the ciprofloxacin-responsive prophage cluster and repressed the expression of porins and DNA-binding proteins. In study II the transcriptome and proteome of two clonal P. aeruginosa lineages during long-term colonization of cystic fibrosis (CF) patient’s lungs were analyzed. Point mutations in global regulator genes, i.e. retS, gacS, and gacA, were identified by genomic sequencing. Inactivation of RetS, found two years after the initial colonization, induced the expression of genes involved in chronic infections and coding for the type 6-secretion system (T6SS). Additional mutations in the GacS/GacA two-component regulatory system (TCS) were found to repress the expression of T6SS proteins and to induce the expression of proteins belonging to the type 3-secretion system (T3SS). In study III we elucidated the niche-specific adaptation of P. aeruginosa isolates from different infection sites by investigating their protein expression patterns and glucose metabolic fluxes. We could show that isolates from the urinary tract express a higher amount of proteins involved in the acquisition of micronutrients (i.e. iron) and carbohydrates compared to isolates from the CF lung. In study IV 16S rDNA sequencing and metaproteomics were employed to demonstrate that the investigated CAUTI-related biofilms consisted of two to five different species with one or two species dominating the mixed community. Following this line of research, we investigated in study V structure and function of a biofilm of a long-term catheterized patient, which was predominantly composed of P. aeruginosa and Morganella morganii, but also contained a minor proportion of the obligate anaerobe Bacteroides sp.. The comparison of in vivo and in vitro protein expression profiles of P. aeruginosa and M. morganii indicated that iron and carbohydrates are the major growth-limiting factors in the bladder. These results indicate different nutritional strategies of the two pathogens in the bladder environment. A comparison of urinary protein profiles of healthy persons and catheterized patients suggested that the human innate immune system is induced by CAUTIs. Moreover, numerous proteins involved in nutritional immunity, e.g. iron-, calcium- and magnesium-binding proteins, were found to be more abundant in the urine of catheterized patients. A follow-up (meta)proteomics study (study VI) aiming at the elucidation of interspecies interactions during multi-species infections indicated that the urease-positive uropathogen Proteus mirabilis induces the precipitation of metal ions by urine alkalization and thereby limits the availability of these important micronutrients for other co-infecting bacteria. This limitation seems to be sensed by the P. aeruginosa PhoP-PhoQ two-component system (TCS) leading to an increased resistance to antimicrobial peptides and biofilm-forming capacity of the pathogen. Also during co-cultivation of P. aeruginosa with Staphylococcus aureus a slight increase in the expression of the PhoP-PhoQ TCS and the alkaline protease could be observed (study VII). In study VIII a combined metagenomics and metaproteomics approach was employed to investigate structure and function of the lichen Lobaria pulmonaria, a complex consortium consisting of a fungus, an algal partner, cyanobacteria, and a highly diverse bacterial microbiome. The results presented in this work contribute to a better understanding of the manifold and complex bacterial adaptation mechanisms to infection-related and environmental stress and thereby foster the development of novel treatment and prevention strategies.
Background: Robotic-assisted laparoscopy (RAL) is being widely accepted in the field of urology as a replacement for conventional laparoscopy (CL). Nevertheless, the process of its integration in clinical routines has been rather spontaneous. Objective: To determine the prevalence of robotic systems (RS) in urological clinics in Germany, Austria and Switzerland, the acceptance of RAL among urologists as a replacement for CL and its current use for 25 different urological indications. Materials and Methods: To elucidate the practice patterns of RAL, a survey at hospitals in Germany, Austria and Switzerland was conducted. All surgically active urology departments in Germany (303), Austria (37) and Switzerland (84) received a questionnaire with questions related to the one-year period prior to the survey. Results: The response rate was 63%. Among the participants, 43% were universities, 45% were tertiary care centres, and 8% were secondary care hospitals. A total of 60 RS (Germany 35, Austria 8, Switzerland 17) were available, and the majority (68%) were operated under public ownership. The perception of RAL and the anticipated superiority of RAL significantly differed between robotic and non-robotic surgeons. For only two urologic indications were more than 50% of the procedures performed using RAL: pyeloplasty (58%) and transperitoneal radical prostatectomy (75%). On average, 35% of robotic surgeons and only 14% of non-robotic surgeons anticipated RAL superiority in some of the 25 indications. Conclusions: This survey provides a detailed insight into RAL implementation in Germany, Austria and Switzerland. RAL is currently limited to a few urological indications with a small number of high-volume robotic centres. These results might suggest that a saturation of clinics using RS has been achieved but that the existing robotic capacities are being utilized ineffectively. The possible reasons for this finding are discussed, and certain strategies to solve these problems are offered.
Background: Pancreatic ductal adenocarcinoma (PDAC) is characterised by an extremely poor overall survival (OS) compared to other solid tumours. As the incidence of the disease is rising and the treatment options are limited, PDAC is projected to be the 2nd leading cause of cancer-related deaths in the United States by 2030. A majority of patients are not eligible for curative resection at the time of diagnosis, and those that are resected will often relapse within the first few years after surgery. Summary: Until recently, the nucleoside analogue gemcitabine has been the standard of care for patients with non-resectable PDAC with only marginal effects on OS. In 2011, the gemcitabine-free FOLFIRINOX regimen (folinic acid, fluorouracil, irinotecan and oxaliplatin) showed a significant survival advantage for patients with metastatic PDAC in a phase III trial. In 2013, the Metastatic Pancreatic Adenocarcinoma Trial phase III trial with nano-formulated albumin-bound paclitaxel (nab-paclitaxel) in combination with gemcitabine also resulted in a significant survival extension compared to gemcitabine monotherapy. However, both intensified therapy regimens show a broad spectrum of side effects and patients need to be carefully selected for the most appropriate protocol. Key Message: In this study, recent advances in the chemotherapeutic options available to treat metastatic PDAC and their implications for today's treatment choices are reviewed.
Although End Stage Renal Disease (ESRD) is a disease of increasing epidemiological relevance very little is known about the cost of providing the respective dialysis services in Tanzania. This study analyses the cost of outpatient dialysis at Muhimbili National Hospital (MNH) in Tanzania in the year 2014 in order to address the question weather or not dialysis treatment should be a priority intervention in a poor resource country like Tanzania. Cost analyses were performed based on the provider’s perspective including only direct costs of dialysis treatment. Cost of drugs and consumables were obtained from the price list of Medical Stores Department in Tanzania. Overhead were collected from the respective departments and allocated to the final cost centres through step down approach. The results indicates that MNH performs on average 442 hemodialyses per month (34 patients, with three sessions per week) with a personnel placement of 20 nurses, four nephrologists, eight registrars, one nutritionist, two biomedical engineers, four health attendants and nine dialysis machines. The respective average unit cost per haemodialysis is 175.91 US$. Consequently, an average patient requiring three dialyses per week (i.e. 156 dialyses per year) will cause annual costs of 27,441.95 US$. The annual cost of dialysis is enormous for a least developed country like Tanzania where resources and technology are rather limited. Infectious diseases (such as malaria and tuberculosis) are the major health problems. Therefore, from the economic point of view, it seems rational to allocate health care budgets towards diseases that are curable, have higher cost- effectiveness and cater for the majority of the population. However, before a final decision on allocation of budget towards dialysis is made, all efforts that could improve technical efficiency and reduce the costs of materials in Tanzania must be invested. For instance, reducing the nursing time per dialysis.
A slice is an intersection of a hyperplane and a self-similar set. The main purpose of this work is the mathematical description of slices. A suitable tool to describe slices are branching dynamical systems. Such systems are a generalisation of ordinary discrete dynamical systems for multivalued maps. Simple examples are systems arising from Bernoulli convolutions and beta-representations. The connection between orbits of branching dynamical systems and slices is demsonstrated and conditions are derived under which the geometry of a slice can be computed. A number of interesting 2-d and 3-d slices through 3-d and 4-d fractals is discussed.
All-embracing human activities have transformed one-third to one-half of the Earth’s land surface. There is a strong correlation of human well-being with ecosystem function, including poverty alleviation programs as well as enhancements of the health sector. To assess and evaluate the progress and outcome of initiatives stringent periodic observation is necessary. The presented approach combines the strengths of remote sensing and GIS analysis with social research applications. The Bach Ma National Park as an area under investigation was designated as protected area in 1991 and extended in 2008. The national park is uninhabited, but in the surrounding buffer zones approximately 62000 to 79000 people live in rural areas and in mostly impoverished conditions. The comprehensive nature conservation efforts of the Vietnamese Government during the last two decades has led to growing forest coverage of both plantation and natural forests. Nevertheless, the decreasing biodiversity and ongoing illegal logging and hunting activities in the national park are seen as major threats to conservation initiatives in the future. The remote sensing component consists of an analysis of a time series of Landsat images with seven steps ranging from 1973 to 2010. The resulting land cover analysis had 13 different classes. The accuracy assessment revealed an overall accuracy ranging from 84 to 90%. The basis for the second monitoring component was the Landsat images. A total of 25 different landscape metrics on the landscape, class, and patch level were calculated by FRAGSTATS. The third monitoring component is itself divided into two parts. This part consists of a qualitative social research study with 26 expert interviews. The second part consists of 61 standardized questionnaires and an evaluation by SPSS. The assessment reveals a more or less stable forest cover, but with a considerable degradation process during the last four decades. Urban areas outside of the national park have increased in size considerably. For dense and medium forest patches an increasing fragmentation and isolation of patches was observed. Patches of natural forests and habitats of thousands of species have declined dramatically, a trend that is related to a decreasing core area characterised by its undisturbed conditions. The Landsat images and landscape metrics reveal the major differences between the national park and surrounding areas. Despite extensive alterations near the border, remaining forest patches in the national park are still bigger and less fragmented. Nevertheless, the third monitoring component revealed undiscovered changes in the forest beyond the possibilities of used images and metrics. It includes illegal logging and hunting activities. Non-timber forest products are similar to faunistic species collected for both the subsistence of the local residents and associated markets as important sources of income. Based on this bisection, local residents as well as certain strangers are responsible for the activities in the forest. The plan of national park management is to intensify existing monitoring and patrolling in the forest to limit the exploitation and impact in relevant zones. Furthermore, the importance of a network of protected areas has attracted increasing attention. The assessment of the questionnaires reveals that deforestation and also reforestation were the key aspects of historical land cover change. Additionally, for the local residents the conversion of forests into arable land as income alternative is of major importance. Capacity development is not only one priority of the Bach Ma management but also of the international community for all of Vietnam. The tourism industry, one of the most promising opportunities of recent years, stands to support both national park management as well as the local residents. For local residents the extraction of non-timber forest products is an essential portion of the income. The current pilot policy 126/QD-TTg in the extension zone of the national park and research on an appropriate sharing mechanism is of the utmost importance. The established and presented monitoring components are cost-effective and can be used to regularly assess the land cover change of a protected area. They can be implemented together or individually into existing monitoring schemes. A smart combination of pre-existing datasets is necessary to overcome the inconsequential amount of money for monitoring procedures. Supplemented by socio-economic monitoring and the demands as well as impacts of human activity need to be integrated. These extensive requirements for prospective monitoring are only feasible with comprehensive and reliable collaborations.
Compared to gun control legislation in Germany, which is supposed to be one of the most stringent in Europe, gun control legislation in Vietnam is by far stricter. Private possession of guns is not possible in Vietnam. One key point in the German weapons act is the allowance for certain facilitations for airguns that impart kinetic energy of less than 7.5 J to the projectile. These airguns are freely available for purchase by persons 18 years of age or older. The 7.5 J limit is applied to airguns without further efinition of projectile characteristics like projectile head, projectile shape or projectile mass. In the course of a possible relaxation of gun control and facilitation of private gun ownership (especially of airguns) in Vietnam, an implementation of a kinetic energy limit, similar to the German 7.5 J limit, is conceivable. It was the aim of this cumulative doctoral thesis to investigate if this energy limit was a sufficient threshold to estimate the dangerousness of a weapon or projectile, especially in cases where the characteristics of the projectiles are fundamentally different from the “standard” projectiles which were basis for the implementation of this energy threshold in the German weapons act in 1968. The first study investigated basic ballistic parameters of plastic-sleeved composite projectiles in comparison to standard diabolo pellets. Although overall results were inconsistent, for some projectile–weapon combinations (particularly for spring-piston air guns), a significant change of the kinetic energy (− 53 up to + 48 %) to the reference projectile was observed. For some projectile types the legal limit of 7.5 J was exceeded by far. The second study focused on an uncommon discarding sabot airgun projectile (SUSSEX SABO). It was demonstrated, that the sabot principle works properly in high power airguns (E > 17 J), but separation of the core projectile from the sabot cup was also observed in mid- (E = 12.5 J) and low-energy (E < 7.5 J) airguns. While muzzle velocity and kinetic energy values of discarded sabot projectiles are comparable to conventional diabolo pellets, energy density (ED) and penetration capacity are significantly higher. Finally, the ballistic performance of a carbon dioxide-actuated arrow pistol (Arcus Arrowstar) was investigated. Compared to conventional diabolo pellets of a similar kinetic energy level, the penetration depth of this arrow projectile was increased by approximately 35 %. This high penetration capacity was mainly caused by the uncommon projectile characteristics (high cross-sectional density q and pointed arrow head). The findings of this work reveal that special projectile types, like the plastic-sleeved composite pellets, might substantially increase the muzzle energy of airguns. Other uncommon projectile types (like the SUSSEX SABO projectile or the Arcus Arrowstar projectile) exert a higher penetration capacity whereas kinetic energy is similar to standard diabolo pellets and is still beneath the legal limit. For these uncommon projectile types, the 7.5 J limit implemented in the German weapons act is not a sufficient threshold. As demonstrated, next to kinetic energy E and energy density ED, the characteristics of the projectile influence their ballistic parameters. So it is strongly recommended to specify legal kinetic energy limits in gun control legislation in greater detail. The design characteristics of the projectiles (cross-sectional density q and design of the projectile head) should be appropriately taken into consideration.