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- MDPI (33)
- Wiley (21)
- Frontiers Media S.A. (20)
- Springer Nature (7)
- IOP Publishing (4)
- SAGE Publications (3)
- Nature Publishing Group (2)
- Copernicus (1)
Abstract
River estuaries are characterized by mixing processes between freshwater discharge and marine water masses. Since the first are depleted in heavier stable isotopes compared with the marine realm, estuaries often show a linear correlation between salinity and water stable isotopes (δ18O and δ2H values). In this study, we evaluated spatial and seasonal isotope dynamics along three estuarine lagoon transects, located at the northern German Baltic Sea coast. The data show strong seasonality of isotope values, even at locations located furthest from the river mouths. They further reveal a positive and linear salinity‐isotope correlation in spring, but ‐in two of the three studied transects‐ hyperbolic and partially reverse correlations in summers. We conclude that additional hydrological processes partially overprint the two‐phase mixing correlation during summers: aside from the isotope seasonality of the riverine inflows, the shallow inner lagoons in the studied estuaries are influenced by evaporation processes. In contrast the estuarine outflow regions are under impact of significant salinity and isotope fluctuations of the Baltic Sea. Deciphering those processes is crucial for the understanding of water isotope and salinity dynamics. This is also of relevance in context of ecological studies, for example, when interpreting oxygen and hydrogen isotope data in aquatic organisms that depend on ambient estuarine waters.
Human-driven peatland drainage has occurred in Europe for centuries, causing habitat degradation and leading to the emission of greenhouse gases. As such, in the last decades, there has been an increase in policies aiming at restoring these habitats through rewetting. Alder (Alnus glutinosa L.) is a widespread species in temperate forest peatlands with a seemingly high waterlogging tolerance. Yet, little is known about its specific response in growth and wood traits relevant for tree functioning when dealing with changing water table levels. In this study, we investigated the effects of rewetting and extreme flooding on alder growth and wood traits in a peatland forest in northern Germany. We took increment cores from several trees at a drained and a rewetted stand and analyzed changes in ring width, wood density, and xylem anatomical traits related to the hydraulic functioning, growth, and mechanical support for the period 1994–2018. This period included both the rewetting action and an extreme flooding event. We additionally used climate-growth and climate-density correlations to identify the stand-specific responses to climatic conditions. Our results showed that alder growth declined after an extreme flooding in the rewetted stand, whereas the opposite occurred in the drained stand. These changes were accompanied by changes in wood traits related to growth (i.e., number of vessels), but not in wood density and hydraulic-related traits. We found poor climate-growth and climate-density correlations, indicating that water table fluctuations have a stronger effect than climate on alder growth. Our results show detrimental effects on the growth of sudden water table changes leading to permanent waterlogging, but little implications for its wood density and hydraulic architecture. Rewetting actions should thus account for the loss of carbon allocation into wood and ensure suitable conditions for alder growth in temperate peatland forests.
Abstract
Aims
Pinus uncinata is the major treeline‐forming species in the Pyrenees. Yet, the role of its reproduction and dispersal as drivers of treeline dynamics remains unknown. Here we quantify seed production, dispersal and germination changes along the elevation gradient to assess whether they may constrain the foreseen treeline advance in the Pyrenees.
Location
Central Pyrenees, Catalonia, NE Spain.
Methods
We established four plots along an elevation gradient from the closed subalpine forest to the krummholz zone at five study sites. In each plot, we collected cones from five to six trees, measured their length, and triggered their opening in the laboratory to count the number of empty seeds and the number and weight of full seeds. We used the collected seeds in a germination experiment under controlled conditions in growth chambers. Additionally, we installed seed traps along the forest–alpine grassland transition to measure seed rain for three consecutive years in three of the study sites.
Results
The number of full seeds per cone decreased along the elevation gradient and was correlated with cone length. However, the proportion of full seeds per cone and their weight did not differ between elevation positions. Seed rain decreased drastically with elevation and no seeds arrived into the alpine grassland traps consistently across study years. Although germination success did not significantly differ between elevation provenances (i.e., elevation position of origin), we found significant differences in germination dynamics between study sites and between elevation provenances within sites.
Conclusions
Our results indicate that whereas the viability of Pinus uncinata seeds is not limited by elevation, seed production and dispersal are constraining the ongoing rates of treeline advance in the Pyrenees.
Species of the genus Wolffia are traditionally used as human food in some of the Asian countries. Therefore, all 11 species of this genus, identified by molecular barcoding, were investigated for ingredients relevant to human nutrition. The total protein content varied between 20 and 30% of the freeze-dry weight, the starch content between 10 and 20%, the fat content between 1 and 5%, and the fiber content was ~25%. The essential amino acid content was higher or close to the requirements of preschool-aged children according to standards of the World Health Organization. The fat content was low, but the fraction of polyunsaturated fatty acids was above 60% of total fat and the content of n-3 polyunsaturated fatty acids was higher than that of n-6 polyunsaturated fatty acids in most species. The content of macro- and microelements (minerals) not only depended on the cultivation conditions but also on the genetic background of the species. This holds true also for the content of tocopherols, several carotenoids and phytosterols in different species and even intraspecific, clonal differences were detected in Wolffia globosa and Wolffia arrhiza. Thus, the selection of suitable clones for further applications is important. Due to the very fast growth and the highest yield in most of the nutrients, Wolffia microscopica has a high potential for practical applications in human nutrition.
Logging and sawing of timber using conventional tools by unskilled workers causes enormous damage to the valuable timber, residual stand, regeneration, and forest soil in Nepal. The purpose of this study was to find out the volume reduction factor and identify major strategies to reduce timber losses in the tree harvesting process in the Terai Shorea robusta forest of Nepal. Field measurements and product flow analysis of 51 felled trees from felling coupes and randomly selected 167 sawed logs were examined to study harvesting losses. Responses from 116 forest experts were analyzed to explore strategies for reducing harvesting and processing losses. The results showed that timber losses in the felling and bucking stage with and without stem rot were 23% and 22%, respectively. Similarly, timber losses in the sawing stage with and without stem rot were 31% and 30%, respectively. Paired t-test at 5% level of significance revealed that there was significant loss in both tree felling and log sawing stages with present harvesting practice. The most leading factor contributing to timber loss in all of the three stages was the use of inappropriate equipment during tree harvesting. Use of synthetic ropes for directional felling and skidding as well as flexible and portable sawing machine with size adjustment options during sawing were mainly recommended as strategies to reduce timber losses. This study serves as a baseline study to identify and quantify timber losses in different stages of tree conversion and also formulate their reduction strategies in Nepal.
Der rundblättrige Sonnentau (Drosera rotundifolia L.) ist typisch für nährstoffarme Hochmoore und nimmt eine besondere Rolle im Moor-Ökosystem ein. Die Pflanzenart gilt in vielen europäischen Ländern als gefährdet bzw. stark gefährdet. Ihre Gefährdung lässt sich auf drei Ursachen zurückführen:
1) Seit Jahrzehnten führt die Bewirtschaftung der europäischen Moore und die damit einhergehende Entwässerung und Düngung zu einem deutlichen Rückgang der von Drosera-Arten bevorzugten oligotrophen, nassen und sauren Standorte.
2) Bereits im Mittelalter waren Drosera-Arten als Heilpflanzen bekannt und wurden hauptsächlich zur Behandlung von Atemwegserkrankungen (Asthma, Bronchitis, Keuchhusten etc.) eingesetzt.
3) Obwohl seit den 1920er Jahren bereits immer wieder Kultivierungsversuche mit Drosera-Arten durchgeführt wurden, konnte bisher keine Methode für den großflächigen Anbau von Sonnentau realisiert werden, um die von der Pharmaindustrie benötigten Mengen des Drosera-Rohstoffs zu produzieren. Daher werden bis heute europäische und nicht europäische Drosera-Arten immer noch in großen Mengen in natürlichen Mooren gesammelt.
Die zunehmende Zerstörung der natürlichen Moore und die Sammlung für arzneiliche Zwecke stellen zusammen eine ernsthafte Bedrohung für den Erhalt von D. rotundifolia dar. Die Torfmooskultivierungsflächen in Deutschland sind in vieler Hinsicht vergleichbar mit intakten Hochmooren. Das nährstoffarme Milieu der kultivierten Torfmoose dient als Lebensraum für heimische Drosera-Arten, wie Drosera rotundifolia L. und Drosera intermedia Hayne. Daher bieten diese Kulturflächen eine neue Alternative für den Anbau von Drosera-Arten.
In vier Studien wurde die Eignung von Torfmoosrasen für den Drosera-Anbau untersucht, mit Schwerpunkt auf den Anbau von Drosera rotundifolia auf Torfmoos- kultivierungsflächen. In der ersten Studie wurde das Wissen über die Morphologie, Verbreitung, Ökologie, Reproduktion, Nutzung, den Schutz und den Anbau von D. rotundifolia erstmals zusammenfassend diskutiert, um eine wissenschaftliche Grundlage für einen erfolgreichen Anbau auf Torfmoosrasen zu schaffen. Basierend auf diesen Kenntnissen konzentriert sich die zweite Studie auf die Keimfähigkeit von D. rotundifolia und die Überlebensrate von jungen Drosera-Pflanzen auf Torfmoosrasen unter natürlichen, naturnahen und künstlichen Bedingungen. Die dritte Studie fokussiert auf den Gehalt pharmakologisch wirksamer Inhaltsstoffe angebauter und „wild wachsender“ D. rotundifolia- sowie D. intermedia-Pflanzen auf Torfmooskultivierungsflächen. Die vierte Studie untersucht die Biomasseproduktivität und den Ertrag, d. h. den Biomasseanteil der geerntet wird, von beiden o. g. Drosera-Arten auf Torfmooskultivierungsflächen.
Die generierten Daten und Erkenntnisse der vier Studien wurden in vier wissenschaftlichen Artikeln zusammengefasst, wovon zwei bereits veröffentlicht und zwei eingereicht sind.
Die wichtigsten Ergebnisse dieser Studien sind die Folgenden:
I) Drosera rotundifolia ist sehr stark mit Sphagnum-dominierten Pflanzengemeinschaften verbunden, welche durch Entwässerung europaweit zurückgegangen bzw. verschwunden sind. Dadurch ist D. rotundifolia in den meisten europäischen Ländern eine seltene und geschützte Pflanzenart geworden.
II) Verschiedene Drosera-Arten, u. a. D. rotundifolia, D. intermedia, D. anglica und D. madagascariensis, werden immer noch von Pharmaunternehmen verwendet. Die Pflanzen werden in der freien Natur gesammelt, weil deren Anbau zeitaufwendig und (noch) nicht effizient ist. Daher ist die Entwicklung von Anbaumethoden erforderlich.
III) Die selbstentwickelte „Torf-Gefäß-Methode“ ergab sich als die meist geeignete Drosera-Anbau-Methode durch das spezielle Mikroklima des Sphagnum- Rasens, das konkurrenzarme Milieu und den permanent nassen Sphagnum- Torf in den Pflanzgefäßen.
IV) In den Feldversuchen wurden bei der Aussaat sehr niedrige Keimungsraten < 1 % registriert. Deshalb sind für den Anbau mit Aussaat große Mengen an Samen erforderlich.
V) Die Entfernung von Gefäßpflanzen zeigte im ersten Jahr eine positive Korrelation mit der Anzahl der Drosera-Keimlinge und führte im zweiten Jahr zu einer höheren Anzahl überlebender Drosera-Pflanzen.
VI) Auf Torfmooskultivierungsflächen wachsende Drosera-rotundifolia-Pflanzen wiesen eine 7- bis 8-mal höhere Konzentration von 7-Methyljuglon auf als D. madagascariensis, die hauptsächlich für ‘Droserae herba’ verwendet wird.
VII) Für Drosera rotundifolia gab es bezüglich der Tageszeit keine signifikanten Unterschiede in den Konzentrationen bioaktiver Inhaltsstoffe. Dies bedeutet, sie kann ganztägig zwischen 7 und 16 Uhr gesammelt werden. Die höchsten Konzentrationen bioaktiver Inhaltsstoffe wurden für D. rotundifolia und D. intermedia bei 13 bis 24 Monate alten blühenden Pflanzen festgestellt
VIII) Im Vergleich zu natürlichen Mooren Mittel- und Nordeuropas, zeigte D. rotundifolia auf den Torfmooskultivierungsflächen eine 3-34 Mal höhere Biomasseproduktivität (275 kg ha-1 a-1) und einen 2-21 Mal höheren Ertrag (214 kg ha-1 a-1).
IX) Der höchste Ertrag von D. rotundifolia und D. intermedia wurde im Juli und August dokumentiert. In diesen Monaten erreichen die Pflanzen ihr höchstes Gewicht. Auf Torfmooskultivierungsflächen erreichte D. rotundifolia einen viermal höheren Ertrag als D. intermedia. Deshalb ist D. rotundifolia für den Anbau zu bevorzugen.
X) Für eine langfristige nachhaltige Produktion von Drosera wird die Ernte von mindestens 12 Monate alten Pflanzen empfohlen.
Vegetation dynamics and carbon sequestration of Holocene alder (Alnus glutinosa) carrs of NE Germany
(2010)
Erlenwälder auf Moorstandorten werden oft als Zeichen von Moordegradation und Torfoxidation gewertet, aber erlenholzreiche Moorablagerungen (teilweise mehrere Meter tief) sind unter anderem in Nordostdeutschland weit verbreitet. Die Genese von Erlen-Holztorfen wurde bisher überwiegend durch das Konzept der „Verdrängungstorfbildung“ erklärt. Hierbei wird ein von gehölzfreier Vegetation akkumulierter Torf nach einer Grundwasserabsenkung durch nachträglich einwachsende Baumwurzeln verändert. Dieses Prinzip ist aber auf tiefgründige Erlen-Holztorfe nicht übertragbar, da Alnus glutinosa auf naturnahen Moorstandorten meist nur wenige Dezimeter tief wurzelt. Anliegen der vorliegenden Dissertation mit dem Titel „Vegetation dynamics and carbon sequestration of Holocene alder (Alnus glutinosa) carrs in NE Germany“ war die Identifizierung torfbildender Erlenwälder. Die torfbildende Vegetation, die Wasserstände während der Torfbildung und die Vegetationsdynamik dieser bewaldeten Niedermoore wurden durch Analysen von Makrofossilien, Pollen und sonstigen Mikrofossilien (u.a. Pilz-, Pflanzen-, und tierische Reste) rekonstruiert. Hierbei wurden in enger Kooperation mit dem Promotionsvorhaben von Frau Anja Prager (Non-pollen palynomorphs [NPPs] from modern alder carrs [NE Germany] - Tools for reconstructing past vegetation and site conditions) ca. 150 bisher unbekannte Mikrofossilien beschrieben und teilweise identifiziert. Die Datenauswertung wurde anhand von Fossilien-Diagrammen und statistischen Methoden (DCA, Clusteranalysis; Broken Stick Analysis) durchgeführt. Zur Altersbestimmung erfolgten 14C-AMS-Datierungen und der Kohlenstoffgehalt wurde über die Bestimmung der Trockenrohdichte ermittelt, wobei ein durchschnittlicher Kohlenstoffanteil von 56% angenommen wurde. Die untersuchten Erlen-Holztorfe wurden überwiegend direkt in Erlenwäldern abgelagert („Echter Bruchwaldtorf“); sind aber auch teilweise als Verdrängungstorfe aus vorherigen Seggentorfen entstanden oder in von Weiden dominierten Gehölzen gebildet worden. Die jährlichen Medianwasserstände der torfbildenden Erlenwälder lagen einerseits über Flur („sehr nass“-„very wet“) und zum anderen 0 bis 10 cm unter Flur („nass“ - „wet“). Die Vegetationszusammensetzung der sehr nassen Erlenwälder ähnelte teilweise dem Wasserfeder-Erlen-Wald und in einem Fall dem Zweizahn-Erlen-Bruchgehölz. Die nassen Erlenwälder konnten nicht auf der Ebene von Vegetationsformen rekonstruiert werden; charakteristisch war das häufige Auftreten von Urtica und eine Carex-dominierte Krautschicht. Über einen Vergleich der Mikrofossilien der Erlenholz-Tofe mit Mikrofossilien von Oberflächenproben aus rezenten Erlenwäldern konnten die Medianwasserstände nasser, torf-akkumulierender Erlenwälder auf 0-10 cm unter Flur festgelegt werden. Alle untersuchten Profile zeigten eine zyklische Bewaldung mit Zwischenphasen von Offenvegetation (meist Seggenriede). Als Bindeglieder zwischen Erlenwald und Seggenried traten teilweise Weidengebüsche auf, welche sich mitunter auch langfristiger etablieren konnten. Die zyklische Vegetationsentwicklung von Seggenrieden, Weidengebüschen und Erlenwäldern basierte fast ausschließlich auf einem schwankenden Wasserangebot im Moor. Dieses war fast immer die Folge von zyklischen Ent- und Wiederbewaldungen der umliegenden, grundwasserfernen Standorte durch den Menschen. Die „Echten Bruchwaldtorfe“ sind unter verschiedenen hydrologischen Bedingungen entstanden (Verlandungs-, Versumpfungs-, Überrieselungs- und Überflutungsmoor). Die Kohlenstoff-Akkumulationsraten („LORCA“-long-term apparent rate of carbon accumulation) liegen zwischen 31-44 g C m-2 yr-1 in sehr nassen und 50-81 g C m-2 yr-1 in nassen Erlenwäldern. Die höheren Akkumulationsraten in nassen Erlenwäldern können durch die deutlich steigende Produktivität von Erlen-Wäldern schon bei leicht sinkenden mittleren Wasserständen erklärt werden. Eine Verringerung der durchschnittlichen Wasserstände von über Flur zu leicht unter Flur führt annähernd zu einer Verdopplung der Primärproduktion von oberirdischem Holz und Wurzelholz. Dadurch gelangt auch ein größerer Anteil von Wurzelholz in den dauerhaft wassergesättigten Bereich. Da mit sinkenden Wasserständen auch die oxidative Zersetzung zunimmt, ist für die teilweise sehr hohen Torfakkumulationsraten in Erlenwäldern die Zersetzungsresistenz von Holz (Lignin) von zentraler Bedeutung. Die Akkumulationsraten nasser Erlenwälder übersteigen die borealer Waldmoore deutlich und erreichen die Größenordnung der Kohlenstoffakkumulation in den tropischen Waldmooren Süddostasiens. Die vorliegende Dissertation belegt die weitverbreitete und oft umfangreiche Torf- bzw. Kohlenstoffakkumulation in Holozänen Erlen-Wäldern Nordostdeutschlands.
Late to bed, late to rise—Warmer autumn temperatures delay spring phenology by delaying dormancy
(2021)
Abstract
Spring phenology of temperate forest trees has advanced substantially over the last decades due to climate warming, but this advancement is slowing down despite continuous temperature rise. The decline in spring advancement is often attributed to winter warming, which could reduce chilling and thus delay dormancy release. However, mechanistic evidence of a phenological response to warmer winter temperatures is missing. We aimed to understand the contrasting effects of warming on plants leaf phenology and to disentangle temperature effects during different seasons. With a series of monthly experimental warming by ca. 2.4°C from late summer until spring, we quantified phenological responses of forest tree to warming for each month separately, using seedlings of four common European tree species. To reveal the underlying mechanism, we tracked the development of dormancy depth under ambient conditions as well as directly after each experimental warming. In addition, we quantified the temperature response of leaf senescence. As expected, warmer spring temperatures led to earlier leaf‐out. The advancing effect of warming started already in January and increased towards the time of flushing, reaching 2.5 days/°C. Most interestingly, however, warming in October had the opposite effect and delayed spring phenology by 2.4 days/°C on average; despite six months between the warming and the flushing. The switch between the delaying and advancing effect occurred already in December. We conclude that not warmer winters but rather the shortening of winter, i.e., warming in autumn, is a major reason for the decline in spring phenology.
Duckweeds include the world's smallest and fastest growing flowering plants that have the capacity to produce huge biomass with a broad range of potential applications like production of feed and food, biofuel and biogas. In order to achieve optimal and sustainable commercial system, it is necessary that suitable species and clones of duckweeds be identified and selected based on appropriate strategies. However, a high degree of reduction in their structural complexity poses serious problems in identification of closely related species of duckweeds, on a morphological basis. Use of molecular taxonomic tools is the present solution. The state of the art of molecular taxonomy of all the five genera of duckweeds (Spirodela, Landoltia, Lemna, Wolffiella, and Wolffia) is based mainly on the techniques of fingerprinting by amplified fragment length polymorphism (AFLP) and barcoding using sequences of plastidic DNA fragments. After more than 15 years of molecular taxonomic investigations, a certain viewpoint is now available demonstrating all five genera to be monophyletic. Also, the phenetic analyses had made huge progress in delineating the currently defined 36 species of duckweeds, although, all species cannot yet be defined with confidence. Wolffiella has turned out to be the most complicated genus as only 6 to 7 species out of the 10 can be reliably delineated. Further progress in the phylogenetic and phenetic analyses requires more advanced methods like next generation and/or whole genome sequencing. First results using the method genotyping-by-sequencing in the genus Lemna (in combination with metabolomic profiling by matrix-assisted laser desorption ionization time-of-flight mass-spectrometry (MALDI-TOF-MS) as well as AFLP and barcoding by plastidic sequences) are more promising: The species Lemna valdiviana and Lemna yungensis were united to one species, Lemna valdiviana. This reduced the total number of Lemnaceae species to 36.
Samples of two duckweed species, Spirodela polyrhiza and Lemna minor, were collected around small ponds and investigated concerning the question of whether natural populations of duckweeds constitute a single clone, or whether clonal diversity exists. Amplified fragment length polymorphism was used as a molecular method to distinguish clones of the same species. Possible intraspecific diversity was evaluated by average-linkage clustering. The main criterion to distinguish one clone from another was the 95% significance level of the Jaccard dissimilarity index for replicated samples. Within natural populations of L. minor, significant intraspecific genetic differences were detected. In each of the three small ponds harbouring populations of L. minor, based on twelve samples, between four and nine distinct clones were detected. Natural populations of L. minor consist of a mixture of several clones representing intraspecific biodiversity in an aquatic ecosystem. Moreover, identical distinct clones were discovered in more than one pond, located at a distance of 1 km and 2.4 km from each other. Evidently, fronds of L. minor were transported between these different ponds. The genetic differences for S. polyrhiza, however, were below the error-threshold of the method within a pond to detect distinct clones, but were pronounced between samples of two different ponds.
The predominantly vegetative propagating duckweeds are of growing commercial interest. Since clonal accessions within a respective species can vary considerably with respect to their physiological as well as biochemical traits, it is critical to be able to track the clones of species of interest after their characterization. Here, we compared the efficacy of five different genotyping methods for Spirodela polyrhiza, a species with very low intraspecific sequence variations, including polymorphic NB-ARC-related loci, tubulin-gene-based polymorphism (TBP), simple sequence repeat variations (SSR), multiplexed ISSR genotyping by sequencing (MIG-seq), and low-coverage, reduced-representation genome sequencing (GBS). Four of the five approaches could distinguish 20 to 22 genotypes out of the 23 investigated clones, while TBP resolved just seven genotypes. The choice for a particular method for intraspecific genotyping can depend on the research question and the project budget, while the combination of orthogonal methods may increase the confidence and resolution for the results obtained.
Myxomycetes are protists belonging to the super-group Amoebozoa. The traditional taxonomic system, which is now largely outdated by molecular studies, recognizes five orders: Liceales, Trichiales, Physarales, Stemonitales and Echinosteliales. Molecular phylogenies revealed two basal clades: Physarales and Stemonitales (the so-called dark-spored myxomycetes) are the first; the other above-mentioned orders form the second (the bright-spored myxomycetes). However, except for Echinosteliales none of the traditional orders appears to be monophyletic in the traditionally used delimitation. The dark-spored myxomycetes encompass the majority of the described morphospecies. Due to the high genetic divergence in DNA sequences between the bright- and dark-spored myxomycetes, only the latter are considered in this dissertation. Historically myxomycetes have been described as fungi, due to their macroscopically visible fructifications which, though considerably smaller, resemble those of fungi. These fruit bodies provide enough morphological traits to support a morphological species concept with currently ca. 1000 species described. Therefore diversity studies of myxomycetes have been conducted for over 200 years and a substantial body of data on ecology and distribution of these fructifications exist. From these studies myxomycetes are known to form often distinct communities across terrestrial ecosystems with highly specific habitat requirements, such as snowbanks (nivicolous), herbivore dung (coprophilous) or decaying wood (xylophilous). However knowledge on the myxamoebae – the trophic life stage of the myxomycetes – is very scarce. Only recent advances in molecular techniques such as direct species identification based on DNA sequences from environmental samples (ePCR), have made studies of myxamoebae (and other microbes) possible. From these first molecular based studies myxomycetes are currently estimated to account for between 5 to almost 50% of all soil amoebae, and have been shown to be present in a wide variety of soils. To fully take advantage of these new methods, a molecular DNA marker needs to be established as well as a reference sequence database. The usability of a DNA marker gene depends on its ability to separate species by a distinction between intra- and interspecific divergence between sequences of the same and related species, the so-called ‘barcoding gap’.
The first part of this thesis (article I and II) deals with the subject of establishing such a DNA marker and database, and in doing so touches upon the subject of ‘what is a myxomycetes species?’
A total of 1 200 specimens were compiled into a reference database (the largest database to date of dark-spored myxomycetes). The genetic distance from sequence-to-sequence was used to assess genetic clade structures within morphospecies and putative biospecies (sexually isolated linages) were identified. The result was an estimate of hidden diversity, exceeding that of described morphospecies by 99%. The optimum sequence similarity threshold for OTU-picking (genetic species differentiation, denoted Operational Taxonomic Unit) with the used SSU marker was identified as 99.1% similarity.
The second part of this thesis (article III and IV) presents ecological studies conducted with NGS (ePCR) in which the established threshold and database are applied and are demonstrated to provide reliable and novel insights into the soil myxamoebae community. It is investigated whether the occurrence of fruit bodies reflects the distribution of soil myxamoebae, and the research questions ‘do myxomycetes show broader realized niches as soil amoebae than as fructifications?’ and ‘are myxamoebae distributions correlated to potential prey organisms (fungi and bacteria)?’ are investigated.
In the ecological study presented in article III parallel metabarcoding of bacteria, fungi and dark-spored myxomycete was used for the first time in a joint approach to analyze the communities from an elevational transect in the northern limestone German Alps (48 soil samples). Illumina sequencing of the soil samples revealed 1.68 Mio sequences of a section of the rRNA gene, which were assigned to 578 operational taxonomic units (OTU) from myxomycetes. These show a high similarity (>98%) to 42 different morphospecies (the respective figures for bacteria and fungi were 2.16/5710/215 and 3.68/6133/260, respectively). Multivariate analyses were carried out to disentangle microbial interplay and to identify the main environmental parameters determining the distribution of myxamoebae and thus setting the boundaries for their ecological niches. Potential interactions between the three target organisms were analysed by integrating community composition and phylogenetic diversity with environmental parameters. We identified niche differentiation for all three communities (bacteria, fungi and myxamoebae) which was strongly driven by the vegetation. Bacteria and fungi displayed similar community responses, driven by symbiont species and plant substrate quality. Myxamoebae showed a more patchy distribution, though still clearly stratified among genera, which seemed to be a response to both structural properties of the habitat and specific bacterial taxa. In addition we find an altitudinal species turn-over for all three communities, most likely explained by adaptation to harsh environmental conditions. Finally a high number of myxomycetes OTUs (associated with the genus Lamproderma) not currently represented in our reference database were found, representing potentially novel species. This study is the first to report niche differentiation between the guild of nivicolous (“snowbank”) myxomycetes and thus fine-scale niche differentiation among a predatory soil protist; identifying both potential food preferences and antagonistic interactions with specific bacterial taxa.
Finally, the second ecological study (article IV) focuses on comparing the distribution of myxamoebae revealed by ePCR of soil samples with fructifications collected from the same area (714 specimens determined to 30 morphospecies, which form 70 unique ribotypes that can be assigned to 45 ribotype clusters using a 99.1% similarity threshold). The study found a strong coherency between the two inventories, though with species specific relative differences in abundance, which can in part be attributed to the visibility of the fructifications. In addition, a year to year comparison of fructification records gives support to the hypothesis that the abundance of fructifications depends strongly on the onset of snowfall in the previous autumn and the soil temperature regime throughout the winter.
Duckweeds (Lemnaceae) are the smallest and fastest-growing angiosperms. This feature, together with high starch production and good nutritional properties, makes them suitable for several applications, including wastewater treatment, bioenergy production, or feed and food supplement. Due to their reduced morphology and great similarity between diverse species, taxonomic identification of duckweeds is a challenging issue even for experts. Among molecular genotyping methods, DNA barcoding is the most useful tool for species identification without a need for cluster analysis. The combination of two plastid barcoding loci is now considered the gold standard for duckweed classification. However, not all species can be defined with confidence by these markers, and a fast identification method able to solve doubtful cases is missing. Here we show the potential of tubulin-based polymorphism (TBP), a molecular marker based on the intron length polymorphisms of β-tubulin loci, in the genomic profiling of the genera Spirodela, Landoltia, and Lemna. Ninety-four clones were analyzed, including at least two representatives of each species of the three genera, with a special focus on the very heterogeneous species Lemna minor. We showed that a single PCR amplification with universal primers, followed by agarose gel analysis, was able to provide distinctive fingerprinting profiles for 10 out of 15 species. Cluster analysis of capillary electrophoresis–TBP data provided good separation for the remaining species, although the relationship between L. minor and Lemna japonica was not fully resolved. However, an accurate comparison of TBP profiles provided evidence for the unexpected existence of intraspecific hybrids between Lemna turionifera and L. minor, as further confirmed by amplified fragment length polymorphism and sequence analysis of a specific β-tubulin locus. Such hybrids could possibly correspond to L. japonica, as originally suggested by E. Landolt. The discovery of interspecific hybrids opens a new perspective to understand the speciation mechanisms in the family of duckweeds.
Abstract
Individuals of the marine chelicerate lineage Pycnogonida (sea spiders) show considerable regenerative capabilities after appendage injury or loss. In their natural habitats, especially the long legs of sea spiders are commonly lost and regenerated, as is evidenced by the frequent encounter of specimens with missing or miniature legs. In contrast to this, the collection of individuals with abnormally developed appendages or trunk regions is comparably rare. Here, we studied a remarkable malformation in a postlarval instar of the species Phoxichilidium femoratum (Rathke, 1799) and describe the external morphology and internal organization of the specimen using a combination of fluorescent histochemistry and scanning electron microscopy. The individual completely lacks the last trunk segment with leg pair 4 and the normally penultimate trunk segment bears only a single aberrant appendage resembling an extension of the anteroposterior body axis. Externally, the proximal units of the articulated appendage are unpaired, but further distally a bifurcation into two equally developed leg‐like branches is found. Three‐dimensional reconstruction of the musculature reveals components of two regular leg muscle sets in several of the proximal articles. This confirms interpretation of the entire appendage as a malformed leg and reveals an externally hidden paired organization along its entire proximodistal axis. To explain the origin of this unique malformation, early pioneering studies on the regenerative potential of pycnogonids are evaluated and (a) an injury‐induced partial fusion of the developing limb buds of leg pair 3, as well as (b) irregular leg regeneration following near complete loss of trunk segments 3 and 4 are discussed. Which of the two hypotheses is more realistic remains to be tested by dedicated experimental approaches. These will have to rely on pycnogonid species with established laboratory husbandry in order to overcome the limitations of the few short‐term regeneration studies performed to date.
In terms of climate change and climate change mitigation, the quantitative knowledge of global carbon pools is important information. On the one hand, knowledge on the amount of carbon cycling among – and stored in – global pools (i.e. Atmosphere, Biosphere, Cryosphere, Hydrosphere, and Lithosphere) may improve the reliability of models predicting atmospheric CO2 concentrations in terms of fossil fuel combustion. On the other hand, the carbon sequestration potential of specific ecosystems allows for estimating their feasibility regarding carbon trade mechanisms such as the Clean Development Mechanism or the Reducing Emissions from Deforestation and Degradation Program (REDD+). However, up to date, the majority of terrestrial carbon assessments have focused on forests and peatlands, leaving a data gap open regarding the remaining ecosystems. This data gap is likely to be explained by the relatively high carbon densities and/or productivities of forests and peatlands. Nevertheless, to get a precise as possible global picture, information on carbon pools and sequestration of other ecosystems is needed. Although desert ecosystems generally express low carbon densities, they may absolutely store a remarkable amount of carbon due to their large areal extent. In this context, Central Asian Deserts (in particular within the Turanian Deserts, i.e. Karakum, Kysylkum, Muyunkum) likely inhibit comparably high carbon pools as they express a sparse vegetation cover due to an exceptionally high annual precipitation if compared to the World’s deserts. In this dissertation, three important woody plant species – Populus euphratica and Haloxylon aphyllum and Haloxylon persicum – of Central Asian Deserts were investigated for their carbon pools and carbon sequestration potential. These species were chosen as they I) locally express high carbon densities, II) are dominant species, III) have a rather large spatial distribution, and IV) have experienced a strong degradation throughout the 20th century. Thus, they likely show a remarkable potential for carbon re-sequestration through restoration and thus for an application of carbon trade mechanisms (CHAPTER I). P. euphratica was investigated in the nature reserve Kabakly at the Amu Darya, Turkmenistan and in Iminqak at the Tarim He, Xinjiang, China. The assessment of Haloxylon species was restricted to the Turanian deserts west of the Tain Shan. To achieve a first scientific basis for large scale estimates, different methodologies, ranging from allometric formulas, over dendrochronology to remote sensing were combined (CHAPTERS II-V). In CHAPTER II allometric formulas were successfully developed for Haloxylon aphyllum and Haloxylon persicum and applied to six study sites distributed over the Turanian Deserts to represent the allometric variability of Haloxylon species in Central Asia. CHAPTER III derives another allometric formula (only based on canopy area) for H. aphyllum and combines it with a remote sensing analysis from the nature reserve Repetek. Thereby, a first large scale estimate covering the Northeastern Karakum Desert of carbon pools related to mono specific H. aphyllum stands is achieved. CHAPTER IV describes the wood structure of Populus euphratica forests in the nature reserve Kabakly (Turkmenistan) and in Iminqak (Xinjiang, China). In CHAPTER V a dendrochronological approach derives models for predicting the Net Primary Productivity (NPP) and the age of P. euphratica in the nature reserve Kabakly. Thereby, a first feasibility assessment regarding remote sensing analyses and the upscaling of the obtained NPP results is carried out. First estimates based on these local studies (CHAPTER VI), reveal carbon densities ranging from 0.1 – 26.3 t C ha 1 for the three investigated species. Highest maximum and median carbon densities were found for P. euphratica, but Haloxylon aphyllum expressed remarkable maximum carbon densities (13.1 t C ha-1), too. The total carbon pools were estimated at 6480 kt C for P. euphratica, 520 kt C for H. aphyllum stands and 6900 kt C for Haloxylon persicum shrubland. Accounting for the extent of degraded areas, the total re-sequestration potentials of the respective species were estimated at 4320 kt C, 1620 kt C and 21900 kt C, this highlighting the remarkable absolute re-sequestration potential of H. persicum shrubland despite its low average carbon densities. In the end, the main results were put into a broader context (CHAPTER VI), discussing the general feasibility of reforestations both in ecological terms as well as in terms of carbon trade mechanisms. A short example highlights the strong connection between the feasibility of reforestations and the global carbon market. Finally, open research questions are brought forth revealing the yet large research potential of Central Asian Desert ecosystems in general and in terms of carbon sequestration.
Abstract
In the 21st century, most of the world’s glaciers are expected to retreat due to further global warming. The range of this predicted retreat varies widely as a result of uncertainties in climate and glacier models. To calibrate and validate glacier models, past records of glacier mass balance are necessary, which often only span several decades. Long-term reconstructions of glacier mass balance could increase the precision of glacier models by providing the required calibration data. Here we show the possibility of applying shrub growth increments as an on-site proxy for glacier summer mass balance, exemplified by Salix shrubs in Finse, Norway. We further discuss the challenges which this method needs to meet and address the high potential of shrub growth increments for reconstructing glacier summer mass balance in remote areas.
Facing climate change, the development of innovative agricultural technologies securing food production becomes increasingly important. Plasma-treated water (PTW) might be a promising tool to enhance drought stress tolerance in plants. Knowledge about the effects of PTW on the physiology of plants, especially on their antioxidative system on a long-term scale, is still scarce. In this work, PTW was applied to barley leaves (Hordeum vulgare cv. Kosmos) and various constituents of the plants’ antioxidative system were analyzed 30 days after treatment. An additional drought stress was performed after foliar PTW application followed by a recovery period to elucidate whether PTW treatment improved stress tolerance. Upon PTW treatment, the Total Antioxidant Capacity (TAC) in leaves and roots was lower in comparison to deionized water treated plants. In contrast, PTW treatment caused a higher content of chlorophyll, quantum yield and total ascorbate content in leaves compared to deionized water treated plants. After additional drought application and subsequent recovery period, an enhancement of values for TAC, contents of malondialdehyde, glutathione as well as activity of ascorbate peroxidase indicated a possible upregulation of antioxidative properties in roots. Hydrogen peroxide and nitric oxide might mediate abiotic stress tolerance and are considered as key components of PTW.