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Parsimonious Histograms
(2010)
The dissertation is concerned with the construction of data driven histograms. Histograms are the most elementary density estimators at all. However, they require the specification of the number and width of the bins. This thesis provides two new construction methods delivering adaptive histograms where the required parameters are determined automatically. Both methods follow the principle of parsimony, i.e. the histograms are solutions of predetermined optimization problems. In both cases, but under different aspects, the number of bins is minimized. The dissertation presents the algorithms that solve the optimization problems and illustrates them by a number of numerical experiments. Important properties of the estimators are shown. Finally, the new developed methods are compared with standard methods by an extensive simulation study. By means of synthetic samples of different size and distribution the histograms are evaluated by special performance criteria. As one main result, the proposed methods yield histograms with considerably fewer bins and with an excellent ability of peak detection.
Deciphering the entire protein complement of a living cell together with the elucidation of dynamic processes on protein level are the main goals of proteomics as it is used today. To achieve this goal, namely the elucidation of dynamic processes of the entire bacterial cell, we have developed strategies and distinct workflows to cover the most proteins in different subcellular localizations in bacteria together with a stable isotopes labeling approach to follow temporal and spatial changes in different proteomic subfractions. In this work, it has been shown that the use of mass spectrometry based in vivo quantitation techniques and the application of subcellular and chromatographic fractionation has lead to a new level of qualitative and quantitative proteomics data. Emphasizing on the studies revealing the dynamics of the bacterial physiology on a time resolved base, both spatial and temporal processes can be monitored to obtain knowledge on physiological processes in a depth that has not been reached before in comparable global studies.
A central point of this thesis is the investigation of surface structure and surface forces, which are created by single layers of linear polyelectrolytes (PE). In detail, the properties of cationic poly(allylamine)hydrochloride (PAH) and poly-l-lysine (PLL) and anionic sodium poly(styrene sulfonate) (PSS) are determined, which have been physisorbed onto oppositely charged silica surfaces in presence of a predefined salt concentration IAds. For these investigations, a new averaging method for colloidal probe (CP) force profiles is developed, which leads to an ultimate force resolution of 1 pN after the data processing, (signal to noise ratio of > 1000). Furthermore, a new kind of tapping mode imaging is presented (so called colloidal probe tapping mode, CPTM), which uses a CP instead of a sharp tip and hence which allows to resolve lateral inhomogeneously distributed surface forces. The basics to understand such-like obtained tapping mode images are developed. For adsorption from salt-free solution (IAds = 0) the dominance of an electrostatic double layer repulsion is observed, which is commonly attributed to the adsorption of the PE chains into a rather flat and compact layer and which is in full agreement with theoretical predictions and enormous experimental data available in literature. However, even a small addition of salt to the deposition solution (i.e. IAds > 1 mM NaCl) introduces a new contribution to the surface force, which is attributed to PE chains that are non-flatly physisorbed. Using scaling considerations, it is shown for all investigated PE that this non-flat conformation can be described by brush-like chain adsorption (cf. Section 3.3.5); other conformations like mushroom or pancake are excluded (cf. Section 5.3). Interestingly, these non-flatly physisorbed chains combine properties of neutral and PE brushes: (i) The force is very well described by the theory of Alexander and de Gennes (AdG, cf. Section 5.4). By fitting the AdG force law to the data, it is possible to determine the (brush) thickness L of the PE layer and the average distance s between brush-like physisorbed chains. Although the chains are charged the electrostatic contribution to the surface forces is too small to be noticeable (cf. Section 5.4.2). (ii) The thickness L of this PE layer is much larger compared to the compact layer (observed for salt-free adsorption) and is also subject to a pronounced swelling and shrinking if the bulk salt concentration I is decreased or increased, respectively. Surprisingly, all measurements indicate that L follows a scaling law known for salted end-grafted PE brushes, i.e. L ~ N (I s^2)^(-1/3) (with N denoting the degree of polymerization). Furthermore, the osmotic brush phase is never observed in the experiments, but chain stretching up to 1 / 3 of the contour length is regularly achieved. CPTM imaging applied to PSS shows that the brush-like physisorbed chains are not homogenously distributed over the surface, but form brush domains which coexist with flatly physisorbed chains (cf. sections 5.5 and 5.6). This clearly shows that PSS generally physisorbs in two distinct phases, which differ in conformation (flat vs. brush) and the surface force caused (electrostatic vs. steric repulsion). The force profile of the two phase system is in good approximation simply the superposition of a steric and an electrostatic repulsion, whereby their respective contribution to the composed force profile is given by their area fraction. The quantitative analysis reveals that L and s of the brush phase are independent on IAds. This is remarkable, as a change in IAds is known to induce a continuous transition between a stretched (low IAds) and coiled chain conformation (high IAds) in the deposition solution (cf. [Fleer1993, Yashiro2002]). Hence, one can conclude that the conformation in solution does not necessarily correspond to the conformation after adsorption. It is also shown that the area fraction A of the brush domains strongly depends on N and IAds. For example, for constant N the scaling relation A ~ sqrt(IAds) is determined, which is very similar to the common observation that the surface coverage %Gamma of adsorbed PE layers increases also with %Gamma ~ sqrt(IAds) [Schmitt1996, Cosgrove1986, Ahrens2001, Yim2000, Gopinadhan2007, Cornelson2010]. This suggest that brush-like physisorbed PE chains are responsible for the increase in %Gamma. In fact, Section 5.6 shows that the mass of the brush phase is approx. 0.5 mg/m² which is comparable to the increase in %Gamma reported in literature for IAds = 1 M NaCl [Cosgrove1986, Schmitt1996, Ahrens2001]. As a change in IAds does not affect L and s, but solely the brush area fraction A, it is argued in Section 5.6 that an increase in IAds can be understood as a phase transition from the (disordered) flat phase towards the (ordered and extended) brush phase. Here, further theoretical considerations would be desirable.
This thesis presents the results of experimental investigations of the vertical and lateral properties of polyelectrolyte multilayer films (PEMs) adsorbed on a solid support. PEMs are a new class of organic thin films based on self-assembly layer-by-layer (LbL) processes of oppositely charged polyelectrolytes (charged polymers). The LbL assembly technique allows precise control of film thickness within a few nanometers and makes PEM systems especially interesting for technical applications. Thin films are prepared by alternating exposure of a hydrophilic substrate to solutions of oppositely charged polyelectrolytes. In this work, synthetic polycation poly (allylamine hydrochloride) (PAH) and polyanion poly (styrene sulfonate) (PSS) have been used. Range and amplitude of the electrostatic force during PEM build-up, has been shielded by use of high salt concentration in the deposition solution. As a foundation of any theory, role of non-elecrostatic (secondary) forces is explored. Four complementary methods have been combined to investigate the properties and composition of PEMs. X-ray reflectivity is sensitive to electron density gradients, and therefore provides information about film thickness, average electron density and interfacial roughness between materials of different electron densities (like PEM and air). Neutrons are the unique probe that is sensitive to the internal order of the multilayers (scattering length density variation) due to selective deuteration of the layers (PSS replaced by PSS_d). Therefore neutron reflectivity at V6 beamline, at the research reactor BER II, Helmholtz Centre for Materials and Energy (former Hahn-Meitner-Institute), was used in this work. Ultraviolet-visible (UV-Vis) light induces the characteristic absorption peak of polyelectrolytes and metallic nanoparticles, therefore with UV-Vis absorption spectroscopy is possible to probe the aggregation of metallic nanoparticles embedded into PEM by measuring their absorption spectra (imaginary part of the refraction index). Atomic force microscopy (AFM) allows to observe lateral structures at nano-level and to obtain surface topology of the films. Application of only small forces (pN) is achieved by use of a intermittent contact (tapping) mode in air. Summarizing the main results, the unambiguous parametrization of the investigated system for neutron reflectivity measurements enables to obtain detailed information about internal interfaces. New approach for polyelectrolyte multilayer architectures consisting of thick protonated and deuterated blocks can be used in order to distinguish different zones of the thin film growth which can be described as precursor and core zones. Thus, almost no bound water is found in precursor layers at 0% relative humidity, which suggests that water is mobile and the precursor layer is not in the glassy state like in the central zone of the PEM. Swelling behaviour of the PEMs (reversibility of the swelling) can be understood in terms of equilibrium reactions. Explored influence of temperature and type of salt used during preparation contributes to a better understanding of the formation of PEMs. The dependence of the film thickness on preparation temperature, concentration and the type of salt can be described by the hydrophobic nature of the effect. Experimental observations demonstrate that it is possible to decrease both the range and the amplitude of the electrostatic force by using an ion concentration of at least 0.1 mol/L in the solution. The role of secondary interactions such as hydrophobic attraction of the chains that can overcome electrostatic repulsion and become the major contributing factor for the layer formation and resulting structures is emphasized.
This work proposes and experimentally evaluates a new method and the first prototypic design of an apparatus for the objective assessment of peripheral dynamic stereovision. Peripheral dynamic stereovision is understood as the ability to perceive, recognize and observe moving objects in the visual periphery without sacrificing foveal fixation, i.e. shifting the line of sight (e.g. moving the eyes or the head) and loosing attention to the scene of interest. The presence of stereopsis on top further enhances the perceptive quality by adding the third dimension with judgment of depth and estimation of relative spatial positions as central clues for orientation, coordinative interaction and navigation in space. Based on findings that moving stereoscopic contours can induce distinctive optokinetic reactions, a panoramic stimulus pattern was rotated round subjects’ heads. Designed after the Frisby Stereotest, solely the binocular parallax resulting from the plate thickness carries stereoscopic information, excluding all other depth clues. A specially fitted goggle frame assured correct binocular alignment of the subjects adding objectivity. In first experiments, voluntary reactions (pushing a buzzer button) and involuntarily triggered ocular responses have been registered. The Performance Level (PL) and Confidence Ratio (CR) were introduced as benchmarks for voluntary reactions. Despite larger spreads, the PL averaged at 60 % while an elevated CR confirmed a low error rate of 16 % and thus high overall credibility. Poor performance of available recording hard- and software, in many cases, rendered the analysis of involuntary ocular reactions less exhaustive. It was however observable that objects that appear in the periphery of the visual field triggered the onset of nystagmoid search and tracking mechanisms. Finally, mean peripheral locations of subjects’ active reactions have been established at 30 degrees. The outcome of this pilot study in principle confirmed basic feasibility, conceptual validity and practical applicability of this novel method. Prospective fields of application with raised demands on peripheral dynamic stereopsis have been identified and critically assessed. The applicative possibilities and exclusive advantages of this test combining the assessment of stereopsis and dynamic visual field testing have not been matched by solutions published so far. Before however commercialization should be aimed at, design-related issues, including the implementation of electrophysiological ocular measurements, need to be addressed first to lead the post-prototype development to higher diagnostic expressiveness and reliability.
To uncover the genetic structure of Populus euphratica forests along the Tarim River in Xinjiang, China, a PCR set of eight microsatellite markers was established. 18 primer pairs originally developed for P. tremuloides and P. trichocarpa were screened for amplification in P. euphratica. The eight most variable loci were selected for further genotyping experiments. Subsequently, two multiplex PCR assays, each containing four loci, were set up and optimized. Three populations containing altogether 436 trees were used to characterize the selected loci. The set was found to be moderately polymorphic (mean expected heterozygosity = 0.57). The resolution was sufficient to discriminate even siblings with high confidence (PID = 1.81x10-5). Cumulative exclusion probabilities were 0.89 (single parent), 0.98 (paternity), and 1.00 (parent pair) and proved the set’s suitability for parentage analysis. Practical and theoretical analysis of consequences of genotyping errors in this semi-clonal plant showed that the vast majority of errors (62.1%) lead to division of identical genotypes. Merging of different genotypes was found to be a very rare case (0.4%). This always leads to an overestimation of genotypes. A similarity threshold of one allele difference between two genotypes to be regarded as being identical lead to an underestimation of clonal richness and genotype number of one per cent compared to an overestimation of more than 20 per cent without such a threshold. Allowing a certain amount of variation is therefore expected to reflect the clonal structure better than an analysis that considers exact matches only. Using a combination of morphological and molecular analyses, a first study demonstrated that root suckers are clearly distinguished from seedlings in their root architecture. Root suckering starts when trees are 10–15 years old and bridges distances of up to 40 m at a time. Root suckers depend on their parent tree for at least five years and are expected to have a higher mortality than generatively grown trees. Molecular analysis of old growth stands revealed a highly variable proportion of clonal growth between different stands. In the study area, the proportion of clonality decreases with distance to the main river bed (R = 0.31 at the site closest to the main river, R = 0.97 at the site farthest away from the river). An analysis of the history of river movements at different sites indicates a dependency of clonal growth on the frequency of ground water replenishment by the yearly floods. Genetic differentiation among the stands in the study area is low (FST = 0.055), and isolation by distance was not detectable (P = 0.058). Also, the river does not function as a vector for directed gene flow in downstream direction (P > 0.11). The forests are therefore considered to be one large panmictic metapopulation with unrestricted gene flow. Clonal growth does not lead to higher final stand densities (P = 0.99) and is obviously not of crucial importance for stand survival. Furthermore, analysis of vitality measures and size differences indicate that root suckers are in disadvantage both in vitality and in survival rate compared to seedlings. In this light, a possible function of clonal growth as a luxury strategy to enhance a genetic individual’s reproduction success under good site conditions can be discussed. The genetic structure of the (meta)population bears direct implications for management and conversation of the Tugai forest in Xinjiang. Due to the low degree of differentiation and the unhindered gene flow even small, fragmented, or isolated populations have conservational value, thereby clearly answering the SLOSS question (a single large or several small protected areas) in the latter sense. More than that, non-clonal stands with the highest amount of genotypic diversity can be easily identified on satellite and aerial images. Selection of such stands for conservation is therefore possible without expensive and time-consuming molecular analyses.
The objectives of the present work are to relate the spatial distribution of benthic macrofauna in the Baltic Sea to patterns in environmental variables describing near-bottom hydrographical conditions and sediment characteristics, analyzing the data for two various spatial extents. The first case study is devoted to an exploratory statistical description of the prevailing ecological structure within the limited area attached to the region of the Mecklenburg Bight. Key environmental descriptors of spatial distribution of macrofaunal communities were disclosed within the area of investigation: water depth, regarded as a proxy for other environmental factors, and total organic content. Distinct benthic assemblages that are discriminated by particular species (Hydrobia ulvae–Scoloplos armiger, Lagis koreni–Mysella bidentata and Capitella capitata–Halicryptus spinulosus) were defined. Each assemblage is related to different spatial subarea and is characterized by a certain variability of environmental factors. This study represented the basis for the predictive modelling of species distribution in the selected investigation area, which constituted the next part of the investigation. Species-specific models predicting the probability of occurrence relative to environmental and sedimentological characteristics were developed for 29 representative macrofaunal species using a logistic regression modelling approach. Subsequently, the technique for a predictive modelling of species distributions in response to abiotic parameters based on single-factor logistic regression models, utilizing Akaike’s information criterion (AIC) and Akaike weights for multimodel inference, was used. Thus, probabilities of occurrence for selected exemplary species (Arctica islandica, Hediste diversicolor, Pygospio elegans, Tubificoides benedii and Scoloplos armiger) were modelled and mapped. Finally, the investigation proceeded on a large spatial scale. The discriminating ability of such factors as salinity, bathymetry, and sediment characteristics (considered only generally due to the lack of more detailed data) to explain the occurrence of typical macrozoobenthic species on the Baltic Sea-wide extend was tested. Full coverage macrofauna distribution maps, though being increasingly demanded, are generally lacking, with information being merely restricted to point observations. In contrast to spatial interpolation, periled by presence of short distance changes in community structure and dependence of the result on density of the samples, predictive habitat suitability modelling allows to objectively produce distribution maps at a level of detail limited only by the availability and resolution of the environmental data. Various literature sources and available databases were analyzed in respect to the information on macrozoobenthos distribution in the Baltic Sea, resulting in the compilation of an extensive list of taxa and an inventory dataset on species distribution for the whole Baltic Sea. The study demonstrates the need to analyze species’ relationships in gradient systems such as the Baltic Sea and provides a basis for a tool to predict natural and anthropogenic forced changes in species distribution.
Kurze Inhaltszusammenfassung in einer weiteren Sprache (Englisch): Muong Lay is one of the important social and economic areas in Northwestern Vietnam. Landslides occur frequently in the area and seriously affect local livelihoods and living conditions. Therefore, the problem of landslide hazard and mitigation for a sustainable development of this area is significant. The spatial analysis of landslide hazard assessment in the mountainous regions in Muong Lay is important to address this development challenge. This study focuses on the application of GIS and RS to landslide hazard assessment, especially for support of GIS modeling to landslide hazard susceptibility for Muong Lay area. By using Remote sensing with LandSat TM image and aerial photos of scale 1:50,000 and using statistical models with GIS-software’s ENVI3.4, ILWIS3.0, PCI9.0 and ARC/GIS9.1, the study tries to evaluate and estimate the landslide in relation with naturally different elements of natural conditions such as geology, geomorphology, geology-engineering, tectonics, hydrology, rainfall, etc… Especial, the study firstly aims to produce the causal factor maps by verifying digital data. These factors then will be applied in a methodology based on statistical methods such as: “bivariate statistical analysis” and “multivariate statistical analysis” approach to calculate the susceptibility level of each class of each factor to landslide. The integration of Geographic Information System (GIS) and Remote Rensing (RS)for landslide hazard zonation and assessment is a valid approach. In these researches various methods for image integration and information extraction have been analysed and evaluated in detail.
Summary Cyanobacteria are a diverse and ancient group of photosynthetic prokaryotic organisms that can inhabit a wide range of environments including extreme conditions such as hot springs, desert soils and the Antarctic. They are abundant producers of natural products well recognized for their bioactivity and utility in drug discovery and biotechnology applications. Novel intracellular and extracellular compounds from various cultured and field cyanobacteria with diverse biological activities and a wide range of chemical classes have considerable potential for development of pharmaceuticals and other biomedical applications. However, cyanobacteria are still viewed as unexplored source of potential drugs. Especially the collections of cyanobacterial strains from South East Asia where biodiversity is high are still largely unexplored. Thus, we investigated twelve soil cyanobacterial strains isolated from soil samples collected from rice, cotton, and coffee fields in Dak Lak province of Vietnam and one marine strain, Lyngbya majuscula collected from Khanh Hoa province of Vietnam for the search for new compounds with antimicrobial and cytotoxic activities. From the 12 soil cyanobacterial strains, 48 extracts prepared with n-hexane, methanol, and water for biomasses and ethyl acetate for growth media were screened for antibacterial activity against Gram-positive bacteria (Bacillus subtilis ATCC 6051 and Staphylococcus aureus ATCC 6538) and Gram-negative bacteria (Escherichia coli ATCC 11229, Pseudomonas aeruginosa ATCC 27853). Of 48 extracts, 47.92% and 45.83% showed activity against Bacillus subtilis and Staphylococcus aureus, respectively, while 22.92% and 6.25% exhibited activity against Escherichia coli and Pseudomonas aeruginosa, respectively. All investigated cyanobacteria (12/12) showed antibacterial activity to at least one of the test organisms applied. Among the active extracts, extracts obtained from 5 cyanobacterial strains, Westiellopsis sp. VN, Calothrix javanica, Scytonema ocellatum, Anabaena sp. and Nostoc sp. showed the highest strength and range of antibacterial activity and therefore were selected for chemical investigation with an emphasis on the isolation and structure elucidation of antimicrobial compounds. Bioassay-guided fractionation of the methanol extract prepared from biomass of Westiellopsis sp. VN by silica gel chromatography, followed by sephadex LH-20 chromatography and reversed-phase HPLC led to isolation and identification of 6 compounds as ambiguine D isonitrile, ambiguine B isonitrile, dechloro-ambiguine B isonitrile, fischerellin A, hydroxy-eicosatetraenoic acid and methoxy-nonadecadienoic acid. Identification of these active compounds was established by direct comparison of our spectroscopic data, including 1H NMR and HR-ESI-MS with those reported in the literature. All these compounds showed biological activity. The identification of fatty acids and other volatile components by GS-MS in the active MeOH fraction obtained from EtOAc extract of growth medium was done before commencing further fractionation processes. Culture optimization of Westiellopsis sp.VN showed that NaNO3 deficiency increased accumulation of antimicrobial compounds. Biosynthesis of antimicrobial compounds increased over cultivation time resulting in increased diameter of inhibition zone of the methanol extract towards the end of the 7-to 8- week growth period, but the most clear inhibition zone of this extract was detected after cultivation time of 8 weeks. Bioassay-guided fractionation of the methanol extract prepared from biomass of either Calothrix javanica by C18 chromatography followed by reversed-phase HPLC or Scytonema ocellatum by C18 chromatography followed by silica gel chromatography and reversed-phase HPLC led to isolation and structure elucidation of new cyclic peptide named daklakapeptin. Structure of daklakapeptin was elucidated by exhaustive 1D (1H) and 2D (COSY, TOCSY, NOESY, HMQC, HMBC) NMR spectroscopy in combination with HR-ESI-MS. Daklakapeptin was found to have totally 12 residues including 6 proteinogenic amino acids (Pro, Tyr, Ile, Leu, Gln, Thr), 4 complexes (X,Y,T,Z) and the methyl derivative of Ile. The exact sequence of daklakapeptin is shown in following figure with X: (CH3)2CHCH2CH2CH(NH-)CH2CO-, Y:(CH3)2CHCH(OH)CH(NH-)CO-, T: HOCH2CH2CH(NH-)CO-, Z: HOCH2CHOHCH(NH-)CO- This new cyclic peptide exhibited antibacterial activity against Staphylococcus aureus with diameter of inhibition zone of 12.5 mm in concentration of 200 mg/disc. Further test for activity to other bacteria and for cytotoxic activity are in progress. Using reversed-phase HPLC to separate compounds in the crude ethyl acetate extract obtained from culture medium of Anabaena sp. led to isolation and structure elucidation of flourensadiol. The structure of flourensadiol was established using an extensive array of 1D (1H, 13C, DEPT-135) and 2D (HMQC, COSY, HMBC) NMR and HR-ESI-MS experiments. Flourensadiol was isolated previously from the common western shrub Flourensia cernua. However, only MS, IR, and proton NMR data but no reports on biological activity were available. In this study, we report the complete NMR data of flourensadiol for the first time. Flourensadiol was found to be very strong antibacterial active against Escherichia coli with diameter of inhibition zone of 20.0 mm in concentration of 200 mg/disc. Further test for activity to other bacteria and cytotoxic activity are in progress. Bioassay-guided fractionation of the methanol extract from biomass of Nostoc sp. by silica gel chromatography followed by C18 chromatography and reversed phase HPLC led to isolation of the active fraction NsF2 which exhibited antibacterial activity against Staphylococcus aureus with diameter of inhibition zone of 10.0 mm in concentration of 500 mg/disc. The low resolution ESI-MS of fraction NsF2 showed signal at m/z 426 [M+H]+. The NMR and MS characterization of compounds in fraction NsF2 is in progress. Bioassay-guided fractionation of the methanol extract prepared from biomass of marine cyanobacterium Lyngbya majuscula collected from Khanh Hoa province of Vietnam by various chromatographic methods (CC, PTLC, HPLC) afforded 3 cytotoxic compounds anhydrodebromoaplysiatoxin, debromoaplysiatoxin, and anhydroaplysiatoxin. Identification of these cytotoxic compounds was established by direct comparison of our spectroscopic data, including (1H, 13C) NMR and HR-ESI-MS with those reported in the literature. In our study, debromoaplysiatoxin and anhydroaplysiatoxin exhibited cytotoxic activity against bladder cancer cell line 5637 with IC50 of 86 ng/ml and 40 ng/ml, respectively but anhydrodebromoaplysiatoxin was not yet tested for cytotoxic activity. The identification of fatty acids by GS-MS technique in the n-hexane extract obtained from biomass of this marine cyanobacterium was undertaken before commencing further fractionation processes. The presented results prove that soil cyanobacteria are a promising source to yield chemical and pharmaceutical interesting compounds.
Influence of single amino acid polymorphisms on the in vitro convertibility of goat prion protein
(2010)
Prion diseases or transmissible spongiform encephalopathies (TSEs) are fatal neurodegenerative disorders which include, among others, scrapie and bovine spongiform encephalopathy (BSE). The causative agent is composed mainly of a misfolded isoform of a cellular prion protein (PrPC), denoted prion protein scrapie (PrPSc). Genetically determined PrPC polymorphisms can modulate the convertibility of PrPC to PrPSc and thus lead to prolonged TSE incubation times or even complete resistance of the animal. In sheep, such polymorphisms are located at codons 136, 154 and 171. Several disease-associated amino acid polymorphisms also exist in caprine PrPC. However, due to their large number and the limited number of goats carrying them, it is difficult to assess their specific impact on TSE susceptibility in vivo. The susceptibility can be simulated in vitro by a cell-free conversion assay, in which the conversion efficiency of recombinant PrPC is determined. In this study, twelve caprine PrPC variants (M112T, M137I, L141F, I142M, H143R, N146S, N146D, R151H, R211Q, Q215R, Q222K and wild-type PrPC (denoted INRQ) were produced by using PCR mutagenesis amplification and expressed in E. coli M15 cells and purified on Ni-NTA agarose columns. The renatured PrPC variants had molecular masses of approx. 23 kDa and the expected conformation as determined by CD spectroscopy. These variants were then subjected to a cell-free conversion assay using different BSE and scrapie strains. Cross species (mouse and goat) cell-free conversion studies were performed and specific monoclonal antibodies were used to discriminate the exogenous PrPSc molecules used to seed the reaction and newly converted PrPres. The studies with the mouse-adapted strain Me7 revealed that polymorphisms M137I, H143R and L141F did not influence the conversion of PrPC in a significant manner. However, the reduced conversion rate of the variant I142M (harbouring a methionine at position 142 instead of isoleucine) correlated with longer scrapie incubation times in goats with this polymorphism. The polymorphisms M112T, R151H and Q211R showed also reduced conversion rates in comparison to INRQ, an effect that related well to reduced scrapie susceptibility of such goats in vivo. Polymorphisms N146S, N146D and Q222K were to date extremely rarely found in scrapie affected goats. It was intriguing to see that these amino acid substitutions also abolished the in vitro conversion efficiency completely as did the Q215R polymorphism, which had not yet been associated with scrapie resistance in vivo. Results of cell free conversion studies with mouse adapted BSE prions (BSE/Bl6 strain) correlated well with the results obtained with Me7, although the results with BSE/Bl6 showed more variation. Again it was possible to observe a reduction in the conversion with I142M, R151H and R211Q and no or almost no conversion with N146S, N146D and Q222K and with Q215R respectively. In subsequent experiments, caprine PrPC variants were directly biotinylated so that goat or sheep scrapie as well as cattle, sheep or goat BSE derived PrPSc could be used. In these assays I142M, H143R and R211Q clearly reduced the conversion of PrPC with ovine and caprine scrapie isolates, whereas R151H did not influence the conversion efficiency of biotin-tagged PrPC. Conversion with scrapie isolates showed a marked reduction or no conversion in the case of N146S and N146D which correlated again with the Me7 data and the in vivo observations. In the case of bovine BSE isolates, the cell-free conversion mimicked the species barrier observed in vivo. BSE material from cattle barely converted any caprine PrPC variant into PrPres, whereas BSE from sheep converted all variants including the resistance-associated N146S and N146D, suggesting that the resistance is also prion strain specific. A marked reduction in the conversion rate was also observed with I142M and, less pronounced, with H143R and R211Q corroborating the protective role of these polymorphisms against TSEs. When co-incubated, resistance-associated variants N146D, N146S and Q222K produced a dominant negative effect on the conversion of the susceptible wild-type PrPC genotype (INRQ). In a similar way, the incubation of I142M and H143R also reduced the amount of PrPres in a mixture with INRQ. In conclusion, the cell-free conversion assay results show that the caprine PrP polymorphisms M112T, I142M, R143H, N146S, N146D, R151H, R215Q and Q222K correlated clearly with the in vivo susceptibilities of the goats carrying these polymorphisms. Apart from practical implications, like the possibility of breeding TSE resistant goats, these data indicate that scrapie resistance is modulated by thermodynamic changes affecting PrPC-PrPSc interactions and the formation of conversion intermediates.
The present study was aimed at associating further genes to selected types of laminopathies applying a functional candidate gene approach. Additionally, genotype/phenotype correlations in defined laminopathies were investigated to extend the clinical spectrum and considering practical aspects of molecular genetic analysis in laminopathies. Primary and secondary laminopathies are rare genetic disorders caused by mutations in genes encoding proteins of the nuclear lamina or proteins interacting with the nuclear lamina. So far at least 14 distinct disease phenotypes of primary laminopathies have been found mostly caused by pleiotropic lamin A/C ( LMNA) mutations. Secondary laminopathies can be caused by mutations in other than lamin genes including emerin (STA), lamin associated protein-2 (LAP2) and ZMPSTE24 (ZMPSTE2).
Wadi Wurayah area is located in the north of Fujairah Emirates between the towns of Khor Bidiyah Fakkan and Oman on the Gulf Coast Line in Fujairah Emirates, United Arab Emirates. It lies within a priority World Wide Fund for Nature ( WWF) Global 200 Ecoregions ( ecoregion 127, Arabian Highland Woodlands and Shrublands ), a rich diversity of sheltering rare and endangered mountainous and freshwater habitats and species , and providing opportunities for the revival and sustenance of local livelihoods. However, as most of the United Arab Emirates and the region , the area is undergoing dramatic changes linked to economic diversification and promotion of tourism. The United Arab Emirates in 1999 approved the programmed of work from the UN convention of Biological Diversity ( CBD). This momentum must be used wants it or disappear. In a first move , the United Arab Emirates established the federal Environment Agency ( FEA) that produced the Environmental Law of 1999 with the role to encourage each to Emirates assess its land and coastal / marine resources, formulate plans for establishing protected areas , upgrade those that may already exist , and help implement the environment law. In early 2006, UAE created its first Ministry of Environment and Water ( MEW ), which was before the Ministry of Agriculture and Fisheries. Environmental issues and a greater role of the civil society are now higher on the agenda of the United Arab Emirates government , partner of the Emirates Wildlife Society ( EWS ), the World Wide Fund for Nature ( WWF) - UAE Project Office is the only international conservation NGOs operating in the UAE that plays a pioneering role in partnering with local- governmental institutions to establish win- win solutions. The United Arab Emirates is making tremendous efforts in diversification is the development of tourism. Too often tourism mass , With all of its negative environmental consequences is privileged. However, the more traditional Emirates are seeking alternatives that would preserve their environment and respect the traditional lifestyles of the local communities. This study aims to help a sustainable biosphere reserve integrating oneself local traditional and lifestyle with the conservation of biodiversity and habitat inimitable by providing a model of economical incentives unique to the region . In order to further the implementation of the Wadi Wurayah Biosphere Reserve, this study will: • Implement a set of carefully - targeted actions in Wadi Wurayah and its hinterland and therefore Fujairah Emirates. • Work to demonstrate the feasibility and viability of combining environmental protection in a sensitive area with the preservation of traditional activities. • Support the capacity building of key national and local authorities and selected partners in the Emirates of Fujairah and the UAE So that they have the awareness and skills to fully realize the aims of the study . To set out and develop options for sustainable natural resource management in the proposed Wurayah Biosphere Reserve , one of the UAE as examples of marginal dry lands , building on environmental information system was the best choice using Geographic information systems (GIS ) as a tool. This has been classified to there steps of work: Field Survey and Analysis Lab Office work. As a first step, this study used to survey this area in the light of the work done by the EWSWWF and the Fujairah Municipality, to evaluate the potential and the feasibility of the creation of a Biosphere Reserve. The traditional field survey has been carried out in three batches between January 2007 and January , 2009 for sample collection using specially tailored database forms that suit the properties and nature of the variables measured, and the database . Design The information obtained from field survey included the Landscape and their local classification and distribution , local habitats , water catchments areas , local rangeland systems and indigenous agro -ecological zones. This information in addition to the laboratory analysis has then be transformed into GIS format, and overlaid with the base maps of the study area in order to produce a georeferenced maps. Various types of maps required according the selected works related to area of study have been used as an input data for the GIS system An integrated management methodology / approach has been proposed associated with the plan of work throughout the forthcoming years. The plan of work is designed to be as consistent as possible with that of the concept of the UNESCO 's Man and Biosphere Program.
Tunable Diode Laser Absorption Spectroscopy in the mid InfraRed spectral range (IR-TDLAS) has been applied to investigate the behaviour of CF, CF2 and C2F4 species produced in pulsed CF4/H2 capacitively coupled radio frequency plasmas (13.56 MHz CCP). This experimental technique was shown to be suitable for temporally resolved measurements of the absolute number density of the target molecules in the studied fluorocarbon discharges. The temporal resolution of about 20…40 ms typically achieved in the standard data acquisition mode (“stream mode”) was sufficient for the real-time measurements of CF2 and C2F4, but not of CF whose kinetics was observed to be much faster. Therefore, a more sophisticated approach (“burst mode”) providing a temporal resolution of 0.94 ms was established and successfully applied to CF density measurements. In order to enable the TDLAS measurements of the target species, preliminary investigations on their spectroscopic data had been carried out. In particular, pure C2F4 has been produced in laboratory by means of vacuum thermal decomposition (pyrolysis) of polytetrafluoroethylene and used as a reference gas. Therefore, an absorption structure consisting of several overlapping C2F4 lines around 1337.11 cm-1 was selected and carefully calibrated, which provided the first absolute measurements of the species by means of the applied experimental technique. The absolute number density traces measured for CF, CF2 and C2F4 in the studied pulsed plasmas were then analysed, in which two differential balance equations were proposed for each of the species to describe their behaviour during both “plasma on” and “plasma off” phases. Analytical solutions of the balance equations were used to fit the experimental data and hence to deduce important information on the kinetics of the studied molecules. In particular, during the “plasma off” phase, the self-recombination of CF2 (CF2 + CF2 (+M) → C2F4 (+M)) was found to be dominant in the kinetics of the radical, but of minor importance for C2F4 production. A rapid consumption of CF observed within 7…25 ms after switching off the plasma was explained mainly by volume reaction with other species (most likely with CF3), whereas diffusion of the radical towards the reactor walls followed by sticking on the surfaces was found to contribute only at relatively low pressures (<10 Pa). Under certain discharge conditions, measured CF density traces exhibited significant overshoots in 50…150 ms after the plasma ignition, which had not been known from literature before. The electron impact fragmentation of C2F4 was shown to be essential for CF production at the beginning of the “plasma on” phase and therefore for formation of the observed CF density overshoots. Finally, the broad band FTIR spectroscopy was applied in order to better characterize the gas phase composition of the studied plasmas. Thus, absorption bands of CF4, C2F4, C2F6, C3F8, CHF3 and HF stable molecules were detected in the FTIR spectra recorded between 400 and 4000 cm-1. The spectra were then successfully deconvolved and the absolute concentration of the detected species was estimated. In particular, the absolute number density of C2F4 obtained from the FTIR measurements was in a good agreement with that achieved by means of the IR-TDLAS technique. The work was supported by the German Research Foundation (DFG) within the framework of the Collaborative Research Centre Transregio 24 “Fundamentals of Complex Plasmas” (SFB/TRR24, project section B5).
In the present work, a time- and radial-dependent fluid model has been developed to describe the glow-to-arc transition of the positive column in the course of constriction. The self-consistent model comprises the particle balance equations for the relevant species, the balance equation of the mean electron energy and the heavy particle temperature in the plasma, the Poisson equation for the space-charge potential, and a current balance determining the axial electric field. The model adopts the nonlocal moment method, i.e., the system of the balance equations resulting from the moments of the radially dependent Boltzmann equation is solved. The electron transport and rate coefficients are adapted as functions of the mean energy of the electrons, the gas temperature and the ionization degree. The model is applied to a description of the constriction of the dc positive column in argon, for a wide range of pressures and applied currents. Pronounced nonlocal features of the mean electron energy balance are found and their influence on the constricted argon positive column is analyzed. Different assumptions concerning the electron velocity distribution function (EVDF) have been considered in the present model. The assumption of a Maxwellian distribution for the electrons was found to be inappropriate, while the assumption of a Druyvesteyn distribution for the electrons was found to be suitable for describing qualitatively the glow-to-arc transition. However, the standard model using the EVDF obtained from the solution of the steady-state, spatially homogeneous electron Boltzmann equation including electron-electron collisions allows to describe the constriction effect and provides best agreement with experimental data and other available modelling results. The fluid model has also been used to study a medium-pressure pulsed positive column in xenon at conditions of the contracted discharge. The simulation results provide a detailed insight in the physical mechanisms of xenon discharges in pulsed mode. The stepwise ionization of the excited atoms, the conversion of the atomic ions into molecular ions as well as the dissociative recombination of the molecular ions are found to be the most important processes for the pulsed positive column in xenon plasmas at conditions of the contracted discharge. The comparison of the model predictions with experimental results generally shows good agreement. In particular, the model predictions are suitable for qualitative reproduction of the significant increase of low-lying atomic levels densities as well as of the higher and of the relaxed lowest vibrational states of the Xe2* excimers in the afterglow phase of the pulse.
Bacillus licheniformis is one of the most important hosts used in the biotechnological industry for the production of technical enzymes, antibiotics and a number of biochemicals. Although this bacterium has been used for a long time as an expression host, only little information on expression systems of this host is available. An expression system could be controlled by a cell density signal, a specific chemical inducer or a thermal shift. A limiting substrate such as glucose or phosphate limitation is suggested to use as the signal for the induction of an expression system. When B. licheniformis cells are subjected to nutrient limitation conditions, numerous genes involved in the metabolism of alternative nutrient sources are induced in order to keep cell survival. Therefore, the main topic of this study was to identify and investigate the regulation of genes or operons which are strongly induced in B. licheniformis cells grown under nutrient limitation conditions in order to apply for the construction of potential new expression systems. The research includes studies on the regulation of genes which are responsible for the acetoin and 2,3-butanediol utilization in B. licheniformis cells grown under glucose limitation conditions. Furthermore, we also analyzed the regulation of phytase gene expression as well as investigated the function of a putative ribonuclease expressed in B. licheniformis under phosphate limitation conditions. From this study, it was shown that in B. licheniformis, the utilization of acetoin and 2,3-butanediol was mainly mediated by enzymes encoded by the acoABCL operon. The transcription of this operon was regulated by sigma L transcription factor and was induced by acetoin. The acuABC operon was suggested to play as an indirect regulatory role for the acetoin utilization in B. licheniformis. This operon was controlled by a typical sigma A dependent promoter, however, acetoin was not an inducer for its expression. Furthermore, the regulation of phytase gene expression was suggested to be controlled by PhoPR-two component systems. The results showed that phytate, which is the substrate of phytase enzyme, was not an inducer for the expression of phy gene. However, growth experiments revealed that phytate served as a good alternative phosphate source for the growth of B. licheniformis cells under these conditions. Finally, the inactivation of BLi03719 gene, coding for a putative ribonuclease, resulted in an increase of the total RNA concentration of B. licheniformis cells grown in phosphate limited medium. However, the mutation did not affect the expression of the heterologous reporter gene. Therefore, it could be speculated that the putative ribonuclease BLi03719 plays a role in ribosomal RNA degradation under these conditions.
The aim of this study was to invistigate the effect of the oral health component of a general health promoting program implemented in primary schools of Greifswald city and east Pomerania region. Methods: This program was part of an innovative multidisciplinary general health promoting program, a longitudinal collaborative project based on health competence concept. Seven hundred and forty students with an age range 9-12 years (mean 10.34, SD±0.56, 48% females) were recruited from the fifth grade students of different 18 primary schools. The schools were randomly allocated into two groups. Oral health education was provided to the teachers in the intervention schools and then they conveyed it to their students, while no additional measures were conducted in the control schools. School dental examinations as well as questionnaires for the students and their parents were conducted at baseline and after one and half year of the program. Results: A significant correlation between caries increment and intervention/control group was reported, with a 35% higher risk in the control group. High socio-economic status has a significant highly protective effect in the intervention program with a reduction in incidence risk ratio of 94% (p < 0.001). In the low socio-economic status no preventive effect could found. The association between overweight/obese students and caries increment was border line significance (IRR 1.37, p = 0.055). The intervention program left a protective effective on the students who reported; lower tooth-brushing frequency, do not take care of their teeth, and do not consider sound and healthy teeth. Conclusion: The implemented program was effective in improving dental health, especially among students with high socio-economic status, but failed to achieve an effect in the low socio-economic group. The program was successful in maintaining a good dental health status among students who lack for the essential oral health competence items at the beginning. Social inequalities are an important issue which was partly tackled with a competence-based health promoting program, therefore, additional 76 compulsory preventive measures, such as daily or weekly tooth-brushing at school, should be seriously considered as behavior-centered approach.
Eight hundred and fifty two students with an age range 9-13 years (mean 10.34, SD±0.56, 48% females) were recruited from the fifth grade students of different 19 primary schools in Greifswald and East Pomerania. In conjunction with the compulsory dental community examination, additional data were collected with two questionnaires for the children and their parents. Newly generated items were taken from the children’s questionnaire to form short scales for oral health-related knowledge, behaviour, attitudes. Parents’ questionnaire contains questions on socio-economic status (SES) and child’s health. The response rate was 93.2%; 78.8% for children; parents, respectively. Results: The distribution of DMFT values was highly polarized with most of the children (71%) exhibiting no carious defects, fillings or missing teeth in the permanent dentition with a mean of 0.6 ±1.2. There was a significant correlation between DMFT and social class levels (rs=-0.19, p=0.001) with mean DMFT values of 0.9 ± 1.3, 0.6 ±1.1 and 0.4 ± 0.9 for the low, medium and higher social strata, respectively. There was a clear correlation between the dental attitude and dental behaviour (rs=0.32, p=0.003). However, correlations between knowledge vs. attitude and knowledge vs. behaviour were loose. A statistically significant correlation between DMFT and dental behaviour was found (rs=-0.15, p=0.003). It should be noted that children with higher self-esteem were found to have significantly higher dental awareness scores (rs=0.19, p=0.001). General health was a significant predictor for caries incidence (rs=0.08, p=0.01). The frequency of drinking lemonade or ice tea and eating salty snacks (chips, nuts) showed clear correlations with the DMFT (rs=0.17 and 0.13, p<0.01). Prolonged daily TV watching was associated directly with DMFT values (rs=0.13, p=0.001). A significant correlation was found between caries and smoking, even after adjusting for age (rs=0.1, p=0.002). Smoking children had a significantly higher DMFT rate than children who were not smokers with a mean DMFT of 0.9 ±1.5 vs 0.6 ±1.2 (p=0.004). Interestingly, each of prolonged TV watching, more lemonade drinking and smoking were correlated directly with the low socioeconomic status (Spearman correlation coefficient of 0.13, 0.2 and 0.17, respectively, p<0.05). Regarding malocclusion, 64% the subjects had at least one type of anomaly. Crowding and maxillary overjet represented the major proportion 28% and 23%, respectively. Males exhibited significantly higher increased overbite scores than females p=0.04. Whereas the prevalence of crowding was more common in females than males (p=0.05). Amazingly, more malocclusion was registered in children with caries-free primary teeth when compared to children with carious primary teeth (p=0.05). No significant differences in the mean of dmft or DMFT value were found between normal and non normal occlusion (p>0.05). Undergoing to orthodontic treatment was associated with significantly higher dental awareness scores (p=0.003). No correlation between socio-economic status and malocclusion was registered. Conclusion: This thesis confirms the decline and polarisation of dental caries. Dental behaviour was mostly independent of dental knowledge, but depended on dental attitude. Higher scores in dental behaviour resulted in lower DMFT scores; possibly, oral health promotion should strengthen attitude and actual behaviour instead of knowledge. Higher scores in self-esteem and general health connected with lower caries incidence and higher score in dental awareness. Social inequalities was strongly linked with health inequalities with more prevalence of caries, smoking, prolonged TV watching, wrong diet habits and less sealants application among children of low SES. Hence, oral health-related interventions in children sample should be directed at the social structures with more incorporating of oral health promotion programs into other general health promotion programs. This thesis suggests that; the establishment of healthy behaviours such as a regular teeth brushing at school could be one of the most successful ways to involve all children especially children of low SES in dental care. Malocclusion traits were very common in this sample. This underlines the need for more orthodontic preventive programs among children, in order to reducing the risk factors of malocclusion. The association between prevalence of malocclusion and socio economic status could not be established. No generalised conclusion could be drawn about the relationship between caries and malocclusion.
This dissertation evaluates the effects of site conditions and livestock grazing on the vegetation of Azerbaijan’s winter pastures. We improved methods to estimate grazing intensity in vast rangelands and enhanced an approach to detect discontinuities in vegetation changes along environmental gradients. All analyses use field data from the semi-arid rangelands of Gobustan and Jeiranchel, at the foothills of the Greater Caucasus mountains. The data set comprises 313 vegetation relevés, each sized 100 m², based on a pre-stratification using topographical parameters. Additionally, we included data from farm transects and exclosure experiments. For each plot, selected site and soil variables were determined. VEGETATION AND SITE CONDITIONS: By means of cluster analysis, we derived 16 vegetation types with a total of 272 vascular plant species. Our vegetation classification, which is closely linked to site conditions, is an important groundwork for adapted rangeland management and monitoring. The study areas are dominated by semi-deserts with a high coverage of dwarf shrubs, and the mean number of vascular plant species was found to be about 28 per 100 m². According to ordination analysis (NMDS), species composition changes primarily along the altitudinal gradient, gradually proceeding from the Salsola nodulosa semi-deserts of the lowest parts (below 300 m a.s.l.) to the Salsola ericoides and Artemisia lerchiana semi-deserts of the upper regions (300–650 m a.s.l.). Soil salinity and carbonate concentration decrease as altitude increases. A second gradient reflects grazing intensity. One plant community that is typically found on intensively grazed sites in the vicinity of farmyards stands apart from the rest, which are subject to lower grazing and trampling pressures. A third factor that differentiates plant communities is the sand concentration of the soils. Additionally, communities that occur on steep slopes differ from communities that occur on level terrain. EXCLOSURE EXPERIMENTS: Exclosure experiments revealed that short-time abandonment of grazing leads to an increase in the number of annual species, in vegetation coverage, and in the heights of forbs and grasses. Clipping experiments indicated that the herbaceous species show hardly any compensatory growth in response to grazing. ESTIMATING GRAZING INTENSITY: A recurrent theoretical problem in rangeland research is the spatial modelling of grazing intensity around grazing hotspots like farms or watering places, the so called piospheres. In a widely used approach, grazing intensity is assumed to decrease in direct proportion to the distance from a hotspot. The resulting response patterns, which relate characteristics of the vegetation or site conditions to grazing intensity, are often nonlinear, and have been interpreted as indicating threshold changes or diff erent state-and-transitions along grazing gradients. However, we show that these ‘thresholds’ are usually geometrical artefacts. Taking into account the concentric structure of grazing hotspots, we suggest a new approach that approximates grazing intensity as the ratio of the total number of livestock kept at the farm to the distance between a given plot and the hotspot centre. Our approach is a simple yet significant improvement over current approaches because it enables us to merge or compare data from different sampling sites and because the approximation is in direct proportion to other grazing indicators like dung density or soil salinity. SPECIES TURNOVER PATTERNS: Combining our new grazing pressure model with species presence/absence data, we modelled vascular plant species responses, patterns of species richness and species turnover along grazing gradients on farm transects in Gobustan. The derived typical species response pattern along the finite grazing gradient is a sigmoid decrease. Species richness declines monotonically with increasing grazing intensity and thus conforms to generally acknowledged assumptions on the relationship between species richness and grazing pressure in semi-arid rangelands. Species turnover along the gradient was calculated using the slopes of species response curves. At first sight, the resulting pattern gives evidence for a discontinuous change. However, it ranges within the 95 % confidence interval of a null model based on assumptions of the individualistic continuum concept. Thus, species composition seems to change continuously along grazing gradients in Gobustan. This new null model approach can probably be adapted and applied to all ecological gradients and is useful for the validation of individualcontinuum or community concepts.
Impurity ions pose a potentially serious threat to fusion plasma performance by affecting the confinement in various, usually deleterious, ways. Due to the creation of helium ash during fusion reactions and the interaction of the plasma with the wall components, which makes it possible for heavy ions to penetrate into the core plasma, impurities can intrinsically not be avoided. Therefore, it is essential to study their behaviour in the fusion plasma in detail. Within the framework of this thesis, different problems arising in connection with impurities have been investigated. 1. Collisional damping of zonal flows in tokamkas: The effect of impurities on the collisional damping of zonal flows is investigated. Since the Coulomb collision frequency increases with increasing ion charge, heavy, highly charged impurities play an important role in this process. The effect of such impurities on the linear response of the plasma to an external potential perturbation, as caused by zonal flows, is calculated with analytical methods and compared with numerical simulations, resulting in good agreement. 2. Impurity transport driven by microturbulence in tokamaks: Fine scale turbulence driven by microinstabilities is a source of particle and heat transport in a fusion reactor. A semi-analytical model is presented describing the resulting impurity fluxes and the stability boundary of the underlying mode. The results are compared with numerical simulations. Both the impurity flux and the stability boundary are found to depend strongly on the plasma parameters such as the impurity density and the temperature gradient. 3. Pfirsch-Schlüter transport in stellarators: Due to geometry effects, collisional transport plays a much more prominent role in stellarators than in tokamaks. Analytical expressions for the particle and heat fluxes in an impure, collisional plasma are derived from first principles. Contrary to the tokamak case, where collisional transport is exclusively caused directly by friction, in stellarators an additional source of transport exists, namely pressure anisotropy. Since this term is, contrary to the contribution from friction, non-ambipolar, it plays an important role regarding the ambipolar electric field. Furthermore, the behaviour of heavy impurities in the presence of strong radial temperature and density gradients is studied, which lead to a redistribution of the impurities on the flux surfaces. As a consequence, the radial impurity flux is decreased considerably compared with a plasma in which the impurities are evenly distributed on the flux surfaces.