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The Membrane Transporter OAT7 (SLC22A9) Is Not a Susceptibility Factor for Osteoporosis in Europeans
(2020)
Bone production, maintenance, and modeling are a well-balanced process involving mineralization by osteoblasts and resorption by osteoclasts. Sex steroid hormones, including their conjugated forms, contribute majorly to maintaining this balance. Recently, variants in the SLC22A9 gene have been associated with osteoporosis in Korean females. We had recently shown that SLC22A9, encoding organic anion transporter 7 (OAT7), is an uptake transporter of estrone sulfate and identified several genetic variants in Europeans leading to functional consequences in vitro. We therefore hypothesized that SLC22A9 genetic variants may contribute to the pathophysiology of osteoporosis in Europeans. To test this hypothesis, we examined the associations of SLC22A9 variants with bone quality, fractures, and bone turnover markers. We genotyped SLC22A9 variants in 5,701 (2,930 female) subjects (age range, 20–93 years) extracted from the population-based Study of Health in Pomerania (SHIP and SHIP-TREND) covered by the Illumina Infinium HumanExome BeadChip version v1.0 (Exome Chip). Descriptive data (e.g., history of fractures), ultrasonography of the calcaneus, as well as serum concentrations of carboxy-terminal telopeptide of type I collagen, amino-terminal propeptide of type I procollagen, and vitamin D were determined. Comprehensive statistical analyses revealed no association between low-frequency and rare SLC22A9 variants and bone quality, fractures, and bone turnover markers. Our results indicate that single genetic SLC22A9 variants do not have a major impact on osteoporosis risk prediction in Europeans, yet findings need to be replicated in larger-scale studies.
While ionizing radiation (IR) is a powerful tool in medical diagnostics, nuclear medicine,and radiology, it also is a serious threat to the integrity of genetic material. Mutagenic effects ofIR to the human genome have long been the subject of research, yet still comparatively little isknown about the genome-wide effects of IR exposure on the DNA-sequence level. In this study,we employed high throughput sequencing technologies to investigate IR-induced DNA alterationsin human gingiva fibroblasts (HGF) that were acutely exposed to 0.5, 2, and 10 Gy of 240 kVX-radiation followed by repair times of 16 h or 7 days before whole-genome sequencing (WGS).Our analysis of the obtained WGS datasets revealed patterns of IR-induced variant (SNV and InDel)accumulation across the genome, within chromosomes as well as around the borders of topologicallyassociating domains (TADs). Chromosome 19 consistently accumulated the highest SNVs andInDels events. Translocations showed variable patterns but with recurrent chromosomes of origin(e.g., Chr7 andChr16). IR-induced InDels showed a relative increase in number relative to SNVs anda characteristic signature with respect to the frequency of triplet deletions in areas without repetitiveor microhomology features. Overall experimental conditions and datasets the majority of SNVs pergenome had no or little predicted functional impact with a maximum of 62, showing damagingpotential. A dose-dependent effect of IR was surprisingly not apparent. We also observed a significantreduction in transition/transversion (Ti/Tv) ratios for IR-dependent SNVs, which could point to acontribution of the mismatch repair (MMR) system that strongly favors the repair of transitions overtransversions, to the IR-induced DNA-damage response in human cells. Taken together, our resultsshow the presence of distinguishable characteristic patterns of IR-induced DNA-alterations on agenome-wide level and implicate DNA-repair mechanisms in the formation of these signatures