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Primary tooth trauma occurs commonly during the development of motor coordination. Its consequences do not only affect the traumatized primary tooth but may affect the underlying permanent successor as well. Its management may involve very high costs on patients and insurance companies and complicated injuries can have negative effects on the quality of life of preschool children. Investigating the causes and patterns of trauma in primary teeth are highly needed to aim for preventive measures. This retrospective study compared the patterns of dental trauma injuries at the trauma center at Greifswald University/Germany for a recent pediatric cohort (2014-16, 103 children) with a historic one before the German unification and the health care system reformation (1974-1989, n=120). The data contained details on etiology, injury types and treatment delivered for 450 injured teeth (247 historic, 203 recent). In both cohorts, the occurrence was more common in males than females (63%/55%, resp.) with an age peak from 2 to 6 years. Maxillary incisors were most affected (89.6%/88.6%, resp.) and periodontal ligament injuries dominated (77.8%/90.3%, resp.).
Almost half of the injuries occurred at home (46.6%), mostly due to falling (48.5%) or during playing (37.8%) in the recent pediatric cohort which provided better forensic data due to insurance issues and potential concern about child abuse. Advice and follow up was the most common approach in the recent pediatric cohort (76%).
Trauma patterns in the primary dentition seem to be rather universal due to the activities of small children and their anatomic conditions. Trauma to primary dentition occurred mostly at home or in the nurseries and possibly is hard to avoid due to falls or accidents during normal playing. Even after 30 years and a change in the health care system due to German unification, the patterns remain similar.
2
Glioblastoma multiforme (GBM) is the most common and most aggressive malignant tumor of the central nervous system in adults. The median survival time of patients suffering from GBM is only 14-15 months. Despite a great progress in the technique of resection, radiation therapy, and chemotherapeutic drugs, survival time has not been significantly prolonged. Interestingly, the progression of GBM has been associated with intratumoral immune dysfunction states, and the GBM tissue represents a complex formation of tumor cells itself and diverse non-malignant cells such as endothelial cells, microglia or immunocompetent cells from peripheral blood. In that regard, accumulating evidence supports that Sphingosine 1-phosphate (S1P) acts as a key signal in the cancer extracellular milieu. S1P has been intensively discussed to be an important pro-tumoral molecule, since it is involved in proliferation, migration and invasion of both healthy and malignant cells. An increase in S1P has been associated with proliferation and invasion of GBM and other cancers that display a propensity for brain metastasis. S1P binds to five different cell surface G protein-coupled receptors called S1P receptor 1-5 (S1PR1-5), it has been shown in previous studies that particularly the S1PR1 and 2 are involved in regulating proliferation, metastasis, invasion, vascular angiogenesis and maturation of GBM cells and thus play an important role in tumorigenesis. Therefore, we used S1PR1 (ACT-209905, W146) and S1PR2 modulators/antagonists (Compound 16, JTE013) to investigate the role of these S1P receptor subtypes in the growth of human (prGBM, LN18) and murine (GL261) GBM cells to gain insight into the molecular processes of the pro-tumorigenic S1P signaling cascade in GBM cells. Further, we analyzed the influence of the human monocytic cell line THP-1 on GBM cell growth by co-culture experiments together with simultaneous application of S1PR1/S1PR2 modulators/antagonists to determine the role played by S1PR1 and S1PR2 signaling pathways in the interaction between tumor and immune cells. We found that all tested S1PR1/2 modulators (ACT-209905, W146, Compound 16, JTE013) significantly reduced the viability (Resazurine assay) and vitality (Crystal violet assay) as well as the migration and invasion of prGBM, LN18 and GL261 cells in a concentration dependent manner. The growth inhibitory effect of S1PR1 blocking by ACT-209905 was accompanied by the induction of apoptosis in GBM cells seen by increased caspase 3 activity. When S1PR1 antagonist (ACT-209905, W146) was co-administered with S1PR2 antagonist (Compound 16, JTE013) the inhibitory effect was much stronger compared to the single administration. Further, single and dual application of S1PR1 modulator and S1PR2 antagonist caused a stronger inhibition of GBM cell viability and vitality compared to 100 μM Temozolomide (TMZ) as the standard chemotherapeutic for GBM. These results suggest that both S1PR1 and S1PR2 are involved in the growth of GBM cells and that a simultaneous inhibition of both receptors has synergistic effects. In addition, the influence of THP-1 cells as a model for human monocytes/macrophages on GBM cell growth was analyzed since it has been shown that S1P signaling polarizes macrophages to the pro-tumoral M2 phenotype and S1PR1 has been linked to macrophage activation. Co-culture of GBM cells with THP-1 cells or THP-1 conditioned medium significantly enhanced the viability and vitality as well as the migration and invasion of GBM cells in a cell number dependent manner suggesting that THP-1 cells might secrete to date unknown pro-tumoral molecules which stimulate the pro-invasive growth of GBM cells. Our FACS analyses showed that THP-1 cells express not only the CD11b macrophage marker but also CD163 and CD206 as marker for the pro-tumorigenic M2 phenotype. Interestingly, the concomitant application of the S1PR1 modulator ACT-209905 had a significant inhibitory effect on the THP-1 induced increase of GBM cell growth and migration, which argues for a role of S1PR1 in the pro-tumoral characteristic of THP-1 on GBM cells. Immunoblot analyses further showed that blocking of the S1PR1 pathway leads to a reduced activation of several kinases including p38, AKT1 and ERK1/2 whereas THP-1 cells and THP-1 conditioned medium caused an activation of these kinases. To clarify the role of p38, AKT1 and ERK1/2 in the inhibitory effects of S1PR1 antagonists on GBM proliferation and migration in detail further studies are needed. Beside an impact on growth promoting kinases, S1PR1 blocking by ACT-209905 diminished surface expression (Median Fluorescence Intensity measured by FACS) of the pro-migratory molecules CD54 (ICAM-1) and CD166 (ALCAM), and reduced the percentage of CD62P (P-Selectin) positive GBM cells. In contrast, co-culture with THP-1 cells increased ICAM-1 and P-Selectin content of GBM cells which was reversed by ACT-209905 arguing for a role of ICAM-1 and P-Selectin in the migration of GBM cells. In conclusion, our study suggests a role of S1PR1 and S1PR2 signaling pathways in the growth and progression of GBM, improves our understanding of the complex mechanisms of S1P signaling in GBM cells, and gives at least a partial explanation for the pro-tumorigenic effects that macrophages might have on GBM cells combined with potential underlying mechanisms. Thus, this study argues for a further preclinical and clinical evaluation of a pharmacological modulation of S1PR1 and S1PR2 as a new or adjunctive therapeutic principle in GBM.
80% of chronic kidney diseases are caused by the loss and the damage of a differentiated and postmitotic cell type, the podocytes. The size-selectivity of the blood filtration barrier is highly dependent on the complex interdigitation of the podocyte foot processes as well as of the slit membrane which is spanned in between. Changes of this specific morphology as well as a detachment of podocytes lead to the clinical hallmark of a nephrotic syndrome e.g. proteinuria and oedema formation.
Since specific drugs or therapies are usually not available, patients are often dependent on dialysis and transplantation. Therefore, intensive studies are necessary to understand the pathogenesis of glomerulopathies as well as to identify specific drugs. In the past, it was already demonstrated that the zebrafish is an ideal model to study kidney function and to screen for drugs, since the larvae quickly develop a simple glomerulus that is comparable to the glomeruli of mice, rat and human.
In the present work, a zebrafish model was established to study a specific glomerulopathy named focal segmental glomerulosclerosis (FSGS). FSGS is mainly characterized by histology of the glomeruli which shows segmental scar formation and matrix deposition due to an activation of parietal epithelial cells (PEC) lining the Bowman’s capsule. For this purpose, we used the nitroreductase/metronidazole (NTR/MTZ) system, in which a cytotoxic agent is exclusively generated in podocytes by the enzyme NTR resulting in apoptosis of cells. Firstly, the parameters for development of an FSGS-like disease were evaluated and the glomerular response to podocyte depletion was examined during three days after the induction of podocyte damage. Using classic histological techniques, immunofluorescence staining and transmission electron microscopy, it was possible to demonstrate that zebrafish larvae phenocopy human FSGS in important characteristics after partial podocyte depletion. Secondly, by intravascular injection of fluorescence-labeled high molecular weight dextran, we found that the filtration barrier became leaky. Moreover, we identified a severe podocyte foot process effacement, formation of subpodocyte space pseudocysts and loss of the slit membrane protein podocin. Morphometrical, histological and ultrastructural analysis revealed an enlargement of the glomerulus, proliferation of cuboidal PECs and intraglomerular deposition of extracellular matrix components, all typical hallmarks of FSGS. Further, we observed adhesions between the parietal and the visceral glomerular cell layer forming sclerotic lesions. However, it remains still unclear whether an inflammatory response is involved in the development of sclerotic lesions. Our microscopic analysis provided some evidence for immigration of immunocompetent cells like neutrophils, presumably due to induction of apoptosis in our model.
Taken together, in the present work a zebrafish model was established with characteristics of mammals FSGS which will be useful for pathomechanism studies as well as for drug screening.
Primary producers, alongside heterotrophic bacteria and viruses, modulate the essential global carbon cycle. About half of the Earth’s net primary production originates in the marine environment. By effecting these systems and the burial of carbon, bacteria play a significant role in the world’s climate, especially with regard to rising temperatures and increasing anthropogenic carbon dioxide production.
Particles present substrate-rich niches for particle-associated bacteria, but are rare in the marine system. Particle-associated bacteria, comprising of chemotactic motile free-living and particle-attached bacteria, were shown to have higher respiration rates, were larger in cell and genome size and showed a higher hydrolytic activity of extracellular enzymes compared to the free-living fraction.
Understanding the contribution of particle-associated bacteria to the degradation of algal biomass is essential to understand the marine carbon cycle. However, the identification of this group is difficult and required refinement.
Sequential filtration, the most commonly used technique for the separation of bacterial fractions, provides only access to a part of the particle-associated microbiome, and includes with large and clustered bacteria undesired false-positives. To overcome these limitations, separation by gravity in Imhoff sedimentation cones was explored in this thesis to access, identify and define particle-associated microbiomes, in comparison and conjunction with the established separation techniques like sequential filtration and centrifugation.
The cultivability on agar plates was assessed, aiming at the question which portion of the colony-forming bacteria belong to free-living non-motile or motile bacteria or to particle-attached bacteria. As continuous cultivation on plates often involves loss of cultures, colonies of the original plate were used to obtain partial 16S rRNA sequences of individual colonies and of plate microbiomes.
For future studies on particle-associated bacteria, a representative strain collection was established from particle-attached bacteria retained on 3 μm filters and from particle-associated bacteria collected together with settled algae in sedimentation cones.
To understand the contribution of top-down selection to a yearly recurring bacterioplankton bloom at our sampling site Helgoland, particle-associated strains were included in isolation experiments for flavophages, since Flavobacteriia are among the most important responder to the yearly observed blooms.
Overall, this thesis provides new insights into the isolation and cultivation of particle-associated bacteria – an important, but currently not fully understood fraction of organisms within the marine system.
In this study we investigated the synergistic antimicrobial effect of a dual protocol combining cold atmospheric pressure plasma (CAP) and antimicrobial photodynamic therapy (aPDT) against different planktonic bacterial and yeast species including methicillin-sensitive and methicillin-resistant Staphylococcus aureus, Escherichia coli, extended-spectrum β-lactamase-positive Escherichia coli and Candida albicans. A DBD plasma device was used for CAP treatment while for aPDT, toluidine blue O (TBO) was the photosensitizer (PS) of choice and a radiator emitting visible and water-filtered-Infrared A light (VIS-wIRA) was used as irradiation source.
Microbial suspensions were either exposed to CAP treatment alone, aPDT treatment alone or aPDT followed by CAP exposure in a dual treatment protocol. Aliquots from each suspension were plated on agar plates and the number of colonies surviving after each treatment was counted. Under the experimental conditions conducted in this study, combining sub-lethal exposure doses of CAP and aPDT treatment showed significantly higher antimicrobial efficacy (P<0.0001) compared to single treatments against all tested microorganisms suggesting a synergistic effect which yielded at least 3.3 log microbial reduction corresponding to 99.6 % microbial death. In the dual CAP-aPDT approach, aPDT did not interfere with CAP-induced acidification of solution, a crucial feature for CAP antimicrobial efficiency, which further confirms the promising clinical potential of this combination regime.
We believe that the CAP-aPDT dual approach described in this study holds great potential as a successful novel antimicrobial and healing-supporting strategy especially when directed for the management of acute and chronic wounds and possibly other skin and soft tissue infections. The use of a VIS-wIRA light source in treating skin infections is preferential, due to the additional therapeutic effects of wIRA in wound healing. Furthermore, the enhanced antimicrobial effects of aPDT when combined with CAP as shown in this study may grant for a reduction in treatment times and costs as well as improving patient compliance.
The here presented dissertation investigated the molecular mechanisms, by which the food industry model bacteria Pseudomonas fluorescens and Listeria monocytogenes, grown either as planktonic cultures, were inhibited by plasma treated water (PTW) produced by a microwave-induced plasma source (MidiPLexc). As a starting point, optimal operating parameters were determined with 5 standard liters per minutes(slm)compressed air during the treatment of 10 ml deionized water within a treatment time of up to 15 min (pre-treatment time). Treatment times of 1, 3 and 5 min were selected (post-treatment time). In addition to physical parameters, i.e. temperature measurements at different spots at the plasma source during the production of the PTW, the chemical composition of PTW was determined by pH measurements, chronoamperometry (determination of the H2O2 concentration), ion chromatography (determination of the NO2-, NO3- and ONOO- concentrations) and mass spectrometry (qualitative determination of the molecules). In addition, concentration changes of reactive species over a period of 3 h indicated a decrease of the NO2- concentration as well as an increase of the NO3- and ONOO- concentration in the PTW. Microbiological assays, i.e. quantification of colony-forming units (CFU), fluorescence and XTT assays, revealed a significant reduction of the proliferation ability of the cells, membrane damages and metabolic activity have been demonstrated for planktonic cultures as well as mono- and multispecies biofilms. PTW effects on biofilm structures were investigated using microscopic methods such as fluorescence microscopy, confocal laser scanning microscopy (CLSM), atomic force microscopy (AFM), and scanning electron microscopy (SEM), as well as physical methods such as contact angle measurements. Significant changes in the biofilm structure have been shown, which indicate an ablation of the biofilm mass from top to bottom by approximately 2/3 of the biofilm mass and a destruction of the extracellular matrix (ECM) by the reactive species within the PTW. Subsequently, fresh-cut lettuce has been treated with PTW produced by up-scaled plasma sources. Apart from qualitative parameters of the lettuce after PTW treatment such as texture and color, the concentration of PTW reactive species have been determined. These experiments showed that the composition of the reactive species were slightly different from that of the laboratory-scaled plasma source MidiPLexc. Notably, the PTW treatment did not cause significant changes in texture and color of the fresh-cut lettuce. Finally, a synergistic effect of PTW treatment followed by plasma-processed air (PPA) drying was demonstrated application-specific.
The genus Capripoxvirus of the family Poxviridae consists of the species lumpy skin disease virus, sheeppox virus and goatpox virus that affect cattle, sheep and goats, respectively. Whereas lumpy skin disease virus (LSDV) is transmitted mainly mechanically via blood-feeding insects and possibly hard ticks, the major transmission routes of sheeppox virus (SPPV) and goatpox virus (GTPV) are via direct contact and aerosols. Affected animals develop fever and display clinical signs such as ocular and nasal discharge, lymphadenopathy and characteristic lesions of the skin. Severe clinical course, especially in combination with respiratory signs, can result in the death of the affected animals. In endemic regions, mortality of capripox virus-induced diseases is low (1-10%). However, mortalities of up to 75% have been reported for LSDV and up to 100% for SPPV and GTPV in exotic breeds and high-producing dairy or beef animals. The loss of quality of the leather, reduced weight gain and milk yield as well as complete loss of affected animals have severe impact on national and global economies. Therefore, capripox virus-induced diseases have significant impact on both the affected individual animal as well as on the existence of small-scale farmers and large agricultural enterprises. However, until now, only live attenuated vaccines are commercially available. These attenuated vaccines are not authorized in the European Union and their administration would comprise the disease-free status of the respective country. Thus, reliable diagnostic tools for the detection and characterization of capripox viruses as well as safe and efficient control measures are of high importance.
The objectives of the present thesis were the development, validation and comparison of diagnostic tools, the establishment of challenge infection models and the performance of pathogenesis studies for all three capripox virus species, and the development and testing of different inactivated prototype vaccine candidates against LSDV.
First, new real-time quantitative polymerase chain reaction (qPCR) assays for robust detection and differentiation of LSDV field strains, LSDV vaccine strains, SPPV and GTPV were developed and extensively validated. In the following, two single assays were combined to duplex assays, one for the differentiation between LSDV field strains and LSDV vaccine strains, and the second for discrimination of SPPV and GTPV. Finally, a diagnostic workflow based on these new duplex assays in combination with already published methods was established. This workflow enables time-saving, robust and reliable detection, species-specific identification and genetic and phylogenetic characterization of all three capripox virus species. In addition, already existing serological examination methods (serum neutralization assay and commercial enzyme-linked immunosorbent assay) were compared regarding their sensitivity and specificity. Furthermore, pathogenesis studies with different capripox virus isolates were performed in the respective target species, and the suitability of selected virus isolates as challenge viruses for future vaccine studies was analyzed. Pathogenesis studies with isolates GTPV-“V/103” and LSDV-“Macedonia2016” revealed that both are proper candidates for challenge models. Finally, three different SPPV isolates (SPPV-“V/104”, SPPV-“India/2013/Surankote” and SPPV-“Egypt/2018”) were tested in sheep regarding their virulence to find a suitable challenge model for SPPV, and SPPV-“India/2013/Surankote” was chosen for future vaccine studies.
Once appropriate challenge models were established, different inactivated prototype vaccines against LSDV were developed, and vaccine safety as well as vaccine efficacy were tested in cattle. Eventually, a Polygen-adjuvanted inactivated LSDV-vaccine candidate was selected that is able to fully prevent cattle from any LSDV-related clinical signs after severe challenge infection. Furthermore, molecular and serological data indicate that this inactivated prototype vaccine is even able to induce a kind of “sterile immunity” against LSDV in those cattle. It has to be mentioned that a commercially available vaccine similar to this prototype vaccine would be a great advance for the control of LSDV.
In the future, additional studies addressing diagnostics and optimized control of capripox viruses should be performed. Firstly, probe-based real-time qPCR assays for the differentiation of SPPV and GTPV vaccine strains from their respective virulent field strains should be developed and included into the diagnostic workflow. Secondly, further tests of the inactivated prototype vaccine, e.g. determination of the minimum protective dose and the possibility of cross-protection in sheep and goats against SPPV and GTPV, respectively, should be performed.
In Germany, basic data on the biology, ecology and distribution of rare mosquito species are insufficiently recorded leading to knowledge gaps, for example regarding their vector potential. The introduction of new mosquito species and of the pathogens they transmit has increased the risk of diseases previously uncommon in Germany. These circumstances have led to increased efforts within the past 10 years to better understand the spatio-temporal occurrence and underlying habitat binding of mosquito species and to predict their future distribution, particularly with regard to the changing climatic conditions and changing landscape. A reliable morphological and genetic identification was lacking for several native mosquito species, which forms the basis for any robust monitoring within mosquito surveillance programs or insect conservation projects.
The aim of this thesis was to gain detailed knowledge on the current spatial and temporal occurrence, the habitat binding, and morphological and genetic features with regard to species identification for the non-native species Aedes albopictus (Skuse, 1895), the native species of the Aedes Annulipes Group, and the native and rare species Aedes refiki Medschid, 1928, Culex martinii Medschid, 1930 and Culiseta ochroptera (Peus, 1935).
The thesis compares the suitability of the local climate for the persistence of the species Aedes albopictus sporadically observed in Jena (Thuringia) from 2015 to 2018 with two populations in southern Germany. The focus was on the analysis of extreme winter temperatures and the duration below selected temperature thresholds. In addition to critical temperature conditions, aquatic habitat conditions were of importance. The results of this study suggest that the population could become established in the long term.
Through the monitoring conducted for this thesis, the very rare mosquito species Aedes refiki, Culex martinii in Thuringia and Culiseta ochroptera were rediscovered at several sites in northern and eastern Germany. It was possible to add new information on habitat binding, distribution and abundance for the considered mosquito species. The survival of these rare native mosquito species depends on the preservation of a few remaining habitats. In addition, it can be assumed that these species will become even rarer with future climate change in Germany and, therefore, should be considered endangered. In contrast, other mosquito species could benefit from an increase in average temperatures or precipitation in individual cases.
Due to the contribution to species identification, difficulties in the morphological and genetic identification of selected mosquito species native to Germany could be dispelled. Three forms each were assigned to the known morphological variants of Aedes refiki and Culiseta ochroptera and their peculiarities were described, as well as a new character for species identification was highlighted in the case of Culiseta ochroptera. Generated CO1 mtDNA sequences provide the first DNA-barcodes of Aedes refiki and Culex martinii for Germany.
In five native mosquito species of the Aedes Annulipes Group, twenty types of aberrant tarsal claws were illustrated and described in their morphology. Morphological peculiarities and an asymmetrical occurrence of the aberrant claw types were observed and possible causes for their development were discussed. Together with the development of a basic blueprint of mosquito tarsal claws, the results opened another field of research for the taxonomy, developmental biology and aquatic ecology of arthropods.
Background: To reduce the burden of disease attributable to alcohol, screening for at-risk alcohol use in the general population is recommended. Screening is usually carried out at only one point in time although individual alcohol use may change over time and self-reported consumption may be biased by underreporting. However, there are gaps in research on temporal variability of alcohol use. Therefore, this cumulative dissertation investigated (1) changes in drinking patterns within 4 weeks; (2) changes in screening results within 12 months and factors predicting a transition from low-risk to at-risk alcohol use; (3) whether underreporting can be reduced by prompting respondents to recall their alcohol use in the past week prior to screening.
Methods: Participants were adults from the general population recruited in a municipal registry office. For the first paper, 288 alcohol users were assessed four times using Timeline Follow-Back, each one week apart. Changes in drinking patterns were analyzed using latent transition modeling. For the second paper, 831 control group participants of a randomized controlled trial were screened for at-risk alcohol use at baseline, 3, 6, and 12 months later using the Alcohol Use Disorders Identification Test - Consumption (AUDIT-C). The transition from low-risk to at-risk alcohol use was predicted using logistic regression. For the third paper, 2,379 alcohol users were screened for at-risk alcohol use using the AUDIT-C, either before or after receiving the prompt to recall their past week alcohol use. Data were analyzed using logistic regression.
Results: Within 4 weeks, 35 percent of alcohol users changed their drinking pattern. Changes were more likely for individuals with moderate or heavy compared to light drinking. Within 12 months, 30 percent of alcohol users changed their screening result. Changes were more likely for at-risk compared to low-risk alcohol users. Transitioning from low-risk to at-risk alcohol use was more likely for women (vs. men; Odds Ratio, OR = 1.66), 18- to 29-year-old adults (vs. 30- to 45-year-old adults; OR = 2.30), and individuals reporting two or more drinking days in the past week (vs. less than two; OR = 3.11). When respondents were prompted to recall their alcohol use in the past week prior to screening, they were less likely to report at-risk alcohol use compared to when the screening was conducted without prior prompt (OR = 0.83).
Conclusions: One in three alcohol users changed their consumption, some of them even within a period as short as 4 weeks. These changes might compromise the validity of screening that is commonly based on a single assessment of typical alcohol use. Furthermore, underreporting cannot be reduced by prompting individuals to recall their alcohol use in the past week prior to the screening for at-risk alcohol use. Rather, consecutive questionnaires addressing different aspects of alcohol use within a single survey might be a potential source of bias.
Universal products provide an axiomatic framework to study noncommutative independences general enough to include, besides the well known "single-faced" case (i.e., tensor, free, Boolean, monotone and antimonotone independence), also more recent "multi-faced" examples like bifree independence. Questions concerning classification have been fully answered in the single-faced case, but are in general still open in the multi-faced case. In this thesis we discuss how one can use insights in the relation between universal products and their associated moment-cumulant formula as a starting point towards a combinatorial approach to (multi-faced) universal products. We define certain classes of partitions and discuss why the defining axioms are sufficient to associate to each of them a multi-faced universal product. For the two-faced case we present our result that every positive and symmetric universal product can be produced in this fashion and we outline how these results might contribute to a classification of positive and symmetric universal products.
Drainage has commonly been a pre-requisite for the productive use of peatlands. The biased focus on agriculture, forestry and peat extraction has long ignored the destructive effects of drainage and the successive degradation of ecosystem functions of wet peatlands. Accelerated by the climate crisis, the finite nature of drainage-based peatland use is increasingly recognised. Consequently, productive land use options for wet or rewetted peatlands (paludiculture) are required as sustainable alternatives. A wide range of paludiculture plants and options of biomass utilisation are identified as suitable and promising. Despite the growing interest, experiences with and research on the economic viability of paludiculture are still rare.
This thesis addresses the lack of knowledge on paludiculture in terms of practical feasibility, costs and benefits at the farm level, market prospects and framework conditions. I selected the two currently most advanced paludicultural practices in Europe: a) Harvesting natural reed beds as a traditional ‘low-input’ paludiculture, i. e. the utilisation of existing ‘wild’ vegetation stands; b) ‘Sphagnum farming’ as a novel ‘high-input’ paludiculture including stand establishment and water management required for the active transformation from drainage-based peatland use to paludiculture. In both cases, I investigate three different biomass utilisation avenues. This thesis adds to the fields of problem-driven sustainability and land-use science. Procedures and costs of paludiculture were studied in transdisciplinary research projects in close cooperation with practitioners. Due to the novelty of the topic, I put special emphasis on the triangulation of methods and data sources: pilot trials, field measurements, semi-structured expert interviews, structured questionnaires, secondary data from trade statistics and literature. To account for uncertainty related to costs and revenues, I conduct stochastic scenario analysis (Monte Carlo simulation) for the extended contribution margin accounting of harvesting reeds and sensitivity analysis for the investment appraisal of Sphagnum farming.
Paludiculture on fens: harvesting reeds
Paper I investigates harvesting procedures for reed-dominated (Phragmites australis) vegetation stands. In many European countries special-purpose tracked machinery is applied for large-scale conservation management and the commercial harvest of thatching reed. Stochastic scenario analysis reveals a wide range of possible economic outcomes (ca. € -1000 to € 1500 ha-1 a-1) and identifies material use of reed superior to its use as a source of energy. Winter harvest of high-quality thatching reed in bundles is the most profitable option. Winter harvest of bales for direct combustion is suitable for low-quality stands and has a limited risk of loss. In the case of summer harvest, revenues for green chaff for biogas production cannot cover harvesting costs but non-market income via subsidies and agri-environmental payments may ensure profitability. While biomass for energy generation is limited to a local market, thatching reed is traded as an international commodity. The market situation for thatching reed is investigated for Europe (Paper II) and Germany (Paper III). The major reed consuming countries in Western Europe (Netherlands, Germany, UK, Denmark) rely on imports of up to 85 % of the national consumption, with reed being imported from Eastern and Southern Europe and since 2005 also from China. The total market volume for reed for thatching in Northern Germany is estimated with 3 ± 0.8 million bundles of reed with a monetary value at sales prices of € 11.6 ± 2.8 million. Most of the thatchers (70 %) did not promote reed of regional origin to their customers due to insufficient availability in the first place and a lack in quality as second reason. The cultivation of reed in paludiculture may improve quantity and quality of domestic thatching reed. An area of 6000 ± 1600 ha with an average yield of 500 bundles per hectare would allow covering the current total demand of 3 million bundles of the German thatching reed market (Paper III).
Paludiculture on bogs: Sphagnum farming
Sphagnum farming provides an alternative to peatland degradation in two ways: Firstly, Sphagnum mosses can be cultivated as new agricultural crops on rewetted peatlands. Secondly, the produced Sphagnum biomass is a high-quality raw material suitable to replace peat in horticultural growing media (Paper V). Pilot trials have demonstrated the practical feasibility of establishing Sphagnum cultures on former bog grassland, cut-over bogs and mats floating on acidic waters bodies; Paper IV compares for the three types of production sites the specific procedures, costs and area potential in Germany. Water-based Sphagnum farming is not recommended for large-scale implementation due to highest establishment costs, major cultivation risks and limited area potential. For soil-based Sphagnum farming, the most important cost positions were Sphagnum shoots to set up pilots, investment for water management and regular weed management. Bog grassland has the highest area potential, i. e. 90,000 ha in NW Germany. Paper V assesses the profitability of Sphagnum farming on former bog grassland based on extrapolating five years of field experience data (establishment ņ management ņ harvest) to a total cultivation time of twenty years. Cultivating Sphagnum biomass as founder material for Sphagnum farming or restoration was profitable even in pessimistic scenarios with high costs, high bulk density and low yields. Selling Sphagnum for orchid production was economically viable in the case of medium to high yields with a low bulk density. Cost-covering prices for Sphagnum biomass substituting peat seem achievable if end consumers pay a surcharge of 10 % on the peat-free cultivated horticultural end-product. An area of 35,000 ha of Sphagnum farming suffices to meet the annual demand of the German growing media industry for slightly decomposed Sphagnum peat.
Framework conditions affecting feasibility of paludiculture
The relation of revenues from selling biomass to its production costs is an important piece of the paludiculture feasibility puzzle. Further aspects effecting the economic viability and competitiveness of paludiculture encompass the market demand, the availability of mature technology, legal restrictions, the eligibility for agricultural subsidies, a remuneration of external benefits and the opportunity costs of present farming activities (Paper I, V). Legal and policy regulations are of major importance for land use decisions on peatlands – both for keeping up drainage and for shifting to paludiculture.
Conclusion and Outlook
This thesis provides a first assessment of the costs and profitability of large-scale harvesting of reeds and Sphagnum farming based on real-life data. The paludicultural practices investigated may be a solution for a minor share of the more than 1 million ha of peatlands drained for agriculture in Germany. Future research should also address other biomass utilisation options and other crops. Large-scale pilots are required to improve technical maturity of procedures and machinery, gather reliable data to replace assumptions on costs and revenues and study long-term effects on economics and ecosystem services. The micro-economic perspective needs to be complemented by the societal perspective quantifying and monetising external effects of peatland restoration, paludiculture and drainage-based peatland use. There is a high need for intensified research, large-scale implementation and accelerated adaption of the policy and legal framework to develop paludiculture as an economically viable option for degraded peatlands.
Analysis and Reduction of Cellular Heterogeneity in Strain Optimization of Bacillus licheniformis
(2021)
Bacillus species invest substantial resources in inherent cellular processes for pre-adaptation to environmental changes, many of which are dispensable in the controlled environment of industrial bioprocesses. The underlying physiological mechanisms are well characterized in B. subtilis, but only little is known about these processes in the closely related B. licheniformis. Moreover, experimental conditions in previous studies differ from industrial settings in most parameters, foremost in batch cultures or plate-based analysis over fed-batch processes. In this thesis, cellular heterogeneity was analyzed in B. licheniformis in optimized, nutrient-rich media in batch and fed-batch cultivations. Systematic inactivation of genes involved in biofilm formation and synthesis of the flagellar apparatus or global regulators thereof resulted in higher protein production and provided new insights into biofilm formation and cellular heterogeneity in this strain.
LPAIV H9N2 and HPAIV H5N8 clade 2.3.4.4 viruses have been frequently isolated from domestic and wild birds in Germany and they are endemic in poultry worldwide. H9N2 is known to donate gene segments to other AIV with high case fatality rate in humans (e.g. H5N1, H7N9). Similarly, H5N8 devastated poultry worldwide since 2014 and has been recently isolated from humans. Therefore, it is important to understand the genetic predisposition for adaptation of H9N2 and H5N8 AIV in poultry and mammals. In the first publication, we focused on the variable hemagglutinin cleavage site (HACS) of European and Non-European H9N2 viruses, since the HACS is a main virulence determinant of AIV in birds. We found a preferential substitution of non-basic amino acids (G, A, N, S, D, K) in the HACS at position 319 of European H9N2 viruses compared to non-European H9N2 viruses. Recombinant viruses carrying different non-basic amino acids in the HACS modulated replication in vitro. While these non-basic amino acids did not affect virulence or transmission in chickens, they modulated virulence and replication in turkeys. Moreover, H9N2 viruses with non-basic amino acids in the HACS were able to replicate in mammalian brain cells for multiple cycles even without trypsin. In the second publication, we addressed the question whether reassortment between two recent German H9N2 and H5N8 clade 2.3.4.4. B viruses is possible and analysed the impact on virus fitness in mammals and birds. We found that H9N2 PB1 and NP segments were not compatible to generate infectious H5N8 viruses and this incompatibility was due to mutations outside the packaging region. However, H9N2 NS alone or in combination with PB2 and PA significantly increased replication of H5N8 in human cells. Moreover, H9N2 PB2, PA and/or NS segments increased virulence of H5N8 in mice. Interestingly, in chickens, reassortment with H9N2 gene segments, particularly NS, partially or fully impaired chicken-to-chicken transmission. These results indicate that the evolution of H9N2/H5N8 reassortants showing high virulence for mammals is unlikely to occur in chickens. In the third publication, we focused on the NS1 protein of different HPAIV H5N8 clade 2.3.4.4 viruses from 2013 to 2019 and studied the impact of its C-terminus (CTE) variation on virus fitness in chickens and ducks. Our findings revealed a preferential selection for a certain NS1 CTE length in 2.3.4.4. H5N8 clade A (237 aa) and B (217 aa) viruses over the common length of 230 aa. Indeed, the NS1 CTE can affect virus virulence and pathogenesis in a species and virus clade dependent manner. In chickens, although there was no impact on virulence, NS1 CTE of H5N8-A and H5N8-B, regardless of the length, have evolved towards higher efficiency to block the IFN response. In ducks, NS1 CTE contributed to efficient transmission, replication and high virulence of H5N8-B. In the fourth publication, we assessed the impact of variable length of NS1 on H5N8 virus replication in human cells and virulence in mice. We showed that NS1 of H5N8-B virus unlike the vast majority of NS1 of AIV, shared preferences for short NS1 similar to human and zoonotic influenza viruses. This virus (i) was able to efficiently block IFN and apoptosis induction which might be the first steps for efficient adaptation to human cells and (ii) without prior adaptation replicated at higher levels and was more virulent in mice than H5N8-A. The virulence of the latter virus increased after shortening the NS1 similar to H5N8-B virus. Therefore, it is conceivable that truncation in NS1 is a determinant for adaptation of H5N8 in mammals irrespective of its impact on virus fitness in poultry. Findings in this dissertation indicated that HA mutations in the European H9N2 and NS1 variations in H5N8 viruses play a role in virus fitness in poultry and/or mammals. These results improve our current understanding for AIV adaptation and are useful to assess the potential of these viruses to infect mammals.
Ebolaviruses are zoonotic pathogens causing severe hemorrhagic fevers in humans
and non-human primates with high case fatality rates. In recent years, the number and
scope of outbreaks has increased, highlighting the importance of better understanding
the molecular aspects of ebolaviral infection and host cell interactions in order to be able to better control this virus.
To facilitate virus genome replication, transcription and protein expression,
ebolaviruses recruit and interact with specific host factors. These interactions play a key role in viral infection and influence virus survival and disease outcome. Based on a genome-wide siRNA screen, the three host factors CAD, NXF1 and UAP56 were
recently identified to be involved in ebolavirus genome replication and/or transcription
and/or mRNA-translation. However, mechanistical details of how these host factors
affect the ebolavirus lifecycle remained elusive.
In this thesis I analyzed the functional interactions between EBOV and these newly
identified host proteins in order to better understand the virus-host interface. To this
end I used siRNA knockdown as well as overexpression of these host proteins in
combination with different reverse-genetics based lifecycle modelling assays to
investigate the influence of CAD, NXF1 and UAP56 on individual aspects of the EBOV
lifecycle. Using these systems in relation with a host factor knockdown I was able to
show that the provision of pyrimidines by CAD plays an important role for both EBOV
genome replication and transcription, whereas NXF1 is predominantly required for
mRNA transport. I furthermore used immunofluorescence analysis to examine whether
these host factors are recruited by one or more EBOV proteins to inclusion bodies,
which represent physical sites of ebolavirus genome replication. During these
experiments, I was able to show that CAD and NXF1, and possibly also UAP56, are
recruited to EBOV inclusion bodies in order to fulfill their individual function for EBOV RNA synthesis or later steps in protein expression. Additionally, I was able to show that the uptake of NXF1 into NP-induced inclusion bodies is most likely mediated via the C-terminal domain of NP, and that the FG-repeat interaction domains of NXF1 are sufficient for recruitment. Further, my data indicate that RNA interaction of both NXF1 and NP is not required for this process, but rather important for exit of NXF1 from inclusion bodies. I therefore suggest that the viral mRNA is transferred in inclusionbodies from NP to NXF1, which leads to a rapid export of the NXF1 packed viral mRNA into the cytosol for mRNA translation.
The exact mechanism of how these host factors are recruited into inclusion bodies and whether they have similar functions in the lifecycle of other negative-sense RNA viruses still needs to be investigated. Nevertheless, this study increases our understanding of virus-host interaction of ebolaviruses, and thus helps to identify targets for the development of novel therapeutics against these viruses.
Peatlands are the most space-efficient terrestrial carbon sink on earth, storing more carbon than all other vegetation types in the world combined. The amount of carbon input into peatlands is determined by the primary production and decomposition of plants. The fragile relationship between these two processes is massively disturbed by intensive land use and the associated drainage of large peatland areas, releasing as much carbon dioxide annually as global air travel. Aiming for the substantial reduction of greenhouse gas emissions, rewetting measures have been initiated worldwide to protect and sustainably manage peatlands by restoring the waterlogged conditions required for peat formation. However, the increase in droughts across Europe adds another threat for peatlands by lowering water tables and affecting plant productivity, litter decomposition and phenology, which can reduce their potential for carbon storage.
Fens are minerotrophic peatlands that make up over a third of the peatland area in Europe. The growth and turnover of root biomass is particularly important for the formation and degradation of peat in fens; thus, a special focus should lie on root dynamics research. However, despite their pivotal role for peat formation, we still lack knowledge about root responses to environmental changes caused by rewetting or drought in fens. This thesis aims to advance our knowledge about root processes as well as their abiotic drivers in drained and rewetted fen peatlands of NE Germany, and how they may be affected by an extreme drought. For this purpose, destructive (i.e. in-growth cores, litter bags, soil coring) along with non-destructive measurements (i.e. minirhizotrons, NDVI) were used in situ in forested (alder forests) and graminoid-dominated (sedges and grasses) plant communities representative of the prevailing fen peatlands of Central Europe.
In this thesis, I investigate the environmental drivers of root growth (Chapters I-III), the annual production and decomposition (Chapter II), phenology and temporal dynamics of root growth (Chapters I and III), and the response of root biomass distribution and their functional traits to environmental changes linked to rewetting (Chapter IV). To understand the fundamental differences in productivity of plant communities on mineral and organic soils, above-and belowground phenology and their environmental drivers were compared among different temperate ecosystems (i.e. a beech forest, a forested peatland and two graminoid-dominated fen peatlands) in Central Europe (Chapter I). The study provides evidence that generalizations of aboveground to belowground production are not likely to reflect seasonal dynamics in temperate fen peatlands. Furthermore, the study shows that fine root production can be up to 10 times higher for peatland plant communities than for a beech forest on mineral soil, highlighting the importance of roots for contributing substantially to the formation of organic soils. By comparing annual productivity and decomposition between drained and rewetted fens, it is shown that rewetted fens maintained their productivity under the drought conditions experienced in Central Europe in the year 2018, leading to a higher carbon storage potential despite similar decomposition rates (Chapter II). A deeper understanding on the drivers of this high productivity in the rewetted sites is provided by the analysis of temporal dynamics of root growth and their potential abiotic drivers (Chapter III). Here, the important role of root phenology in the maintenance of productivity of rewetted fens under drought conditions is revealed, since higher root productivity in response to rewetting was driven by an extension of the growing season rather than through a higher growth rate (Chapter III). This thesis shows that rewetting can be beneficial for plant production under drought conditions, which is central to the maintenance of the carbon sink function of peatlands (Chapters II and III). Rewetting maintained high water tables, favouring a plant community adapted to water saturation and also to fluctuating environmental conditions, and thus a community able to cope with periodic water table drawdowns that might increase in the future. Contrarily, drainage caused water tables to constantly drop below rooting depth of plants that might be adapted to drier conditions, but not drought. To gain a deeper understanding of the changes that roots undergo with rewetting and their potential effects on soil carbon storage, a fourth study focuses on the changes in biomass distribution and functional traits of roots along the soil profile (Chapter IV). Together with root age determination the study indicates higher rates of carbon turnover in shallow soil layers and higher belowground carbon investments with rewetting compared to drainage in a forested peatland.
This thesis demonstrates that generalizations of phenological events from plant communities of mineral to organic soils, even though they face the same macroclimatic conditions, are misleading, as they are not subject of the same environmental controls (Chapter I). Rewetting of forest and graminoid-dominated fen peatlands supports their function as carbon sink by enhancing renewed carbon sequestration in form of root biomass (Chapters II-IV). Knowledge about root phenology is crucial to understand plant productivity of peatlands, one of the main drivers of organic matter accumulation (Chapter III). Even though roots are pivotal for mediating the input of carbon into the soil, their dynamics remain one of the least understood aspects of plant function. This thesis contributes to fill this knowledge gap by shedding light on root processes that contribute to the formation of peat and the complexity of the underlying abiotic drivers in rewetted and drained fens in face of a warmer and drier climate.
Ebolaviruses are dependent on host cell proteins for almost all steps in their viral life cycle. While some cellular factors with crucial roles in the ebolavirus life cycle have been identified, many of them remain to be identified or fully characterised. This thesis focuses on the characterisation and identification of host cell interactions of the highly pathogenic Ebola virus (EBOV), probing host-virus interaction at various stages of the viral life cycle. Beginning with viral budding, the function of a recently proposed late domain motif within the EBOV matrix protein VP40 was examined using an EBOV transcription and replication-competent virus-like particle (trVLP) system. Although this motif has been suggested to interact with the endosomal sorting complex required for transport (ESCRT), we could show that this late domain motif does not contribute to EBOV budding.
While many host cell proteins have been identified so far that are important for viral budding, only a few proteins are known that are necessary for EBOV RNA synthesis. Thus, to identify host proteins that are involved in viral replication and transcription, we performed a genome-wide siRNA screen in the context of an EBOV minigenome assay. Using this approach, we identified several proteins that appear to be important for viral RNA synthesis or protein expression. Two of the most prominent hits in our screen were CAD (Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase and dihydroorotase) and NXF1 (nuclear RNA export factor 1). CAD catalyses the first three steps in the de novo pyrimidine biosynthesis, while NXF1 is the main nuclear export protein for cellular mRNAs. In subsequent characterisation studies, using a range of life cycle modelling systems as well as molecular analyses, we could demonstrate that the canonical function of CAD during the pyrimidine biosynthesis is necessary for EBOV replication and transcription. In contrast to this, for NXF1 we discovered a so-far unknown function: Again, by applying different life cycle modelling alongside with molecular assays, we provided evidence that the EBOV nucleoprotein recruits NXF1 into inclusion bodies, the site of EBOV RNA synthesis, where it binds viral mRNAs to export them from these structures. Importantly, for both CAD and NXF1 we were able to recapitulate key data in the context of live EBOV infection, confirming their roles in the viral life cycle.
Both of these identified host factors are promising targets for antiviral therapies and indeed de novo pyrimidine synthesis is emerging as a possible antiviral target for a number of viruses. Similarly, as we could show NXF1 to be important in the life cycle of the highly pathogenic Junín virus, this raises the possibility that disruption of this interaction may result in broad-spectrum antiviral activity. Moreover, for an increasing number of negative-sense RNA viruses inclusion bodies as site of viral RNA synthesis are described to have a liquid organelle character. Therefore, our findings on NXF1 also provide an intriguing model to explain how negative-sense RNA viruses in general overcome this obstacle and export viral mRNAs from inclusion bodies.
Technological advances in light microscopy have always gone hand in hand with unprecedented biological insight. For microbiology, light microscopy even played a founding role in the conception of the entire discipline. The ability to observe pathogens that would otherwise evade human observation makes it a critical necessity and an indispensable tool to infectious disease research. Thus, the aim of this thesis was to optimize, extend, and functionally apply advanced light microscopy techniques to elucidate spatio-temporal and spatio-morphological components of bacterial and viral infection in vitro and in vivo.
Pathogens are in a constant arms race with the host’s immune system. By finding ways to circumvent host-mediated immune responses, they try to evade elimination and facilitate their own propagation. The first study (publication I) demonstrated that the obligate intracellular pathogen Coxiella burnetii is not just able to infect natural killer (NK) cells, but is actually capable of surviving the harsh degradative conditions in the cytotoxic lymphocyte’s granules. Using live-cell imaging of reporter-expressing Coxiella burnetii, the transient NK cell passage was closely monitored to provide detailed spatio-temporal information on this dynamic process in support of a range of static analyses. Bacterial release from NK cells was pinpointed to a time frame between 24 to 48 hours post-infection and the duration of release to about 15 minutes.
The second approach (publications II-V) aimed at shedding light on the greater spatio-morphological context of virus infection. Thus far, most studies investigating the distribution or tropism of viruses in vivo have used conventional immunohistochemistry in thin sections. Omitting the native spatial context of the infection site in vivo inherently bears the risk of incomplete description. While the microscopic tools and sample preparation protocols needed for volumetric 3D immunofluorescence imaging have recently been made available, they had not gained a foothold in virus research yet. An integral part of this thesis was concerned with the assessment and optimization of available tissue optical clearing protocols to develop an immunofluorescence-compatible 3D imaging pipeline for the investigation of virus infection inside its intact spatio-morphological environment (publication II). This formed the basis for all subsequent volumetric analyses of virus infection in vivo presented here. Consequently, this thesis provided a valuable proof of concept and blueprints for future virus research on the mesoscopic scale of host-pathogen interactions in vivo (publications II-V), using rabies virus (RABV; publications II-IV) and the newly-emerged severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2; publication V) as infection models for the nervous system and the respiratory tract, respectively.
Applying and further improving this volumetric 3D imaging workflow enabled unprecedented insights into the comprehensive in vivo cell tropism of RABV in the central (CNS) (publication III) and peripheral nervous system (PNS) (publication IV). Accordingly, differential infection of CNS-resident astrocytes by pathogenic and lab-attenuated RABV was demonstrated (publication III). While either virus variant showed equal capacity to infect neurons, as demonstrated by quantitative image analysis, only pathogenic field RABVs were able to establish non-abortive infection of astrocytes via the natural intramuscular inoculation route. A combined 3D LSFM-CLSM workflow further identified peripheral Schwann cells as a relevant target cell population of pathogenic RABV in the PNS (publication IV). This suggested that non-abortive infection of central and peripheral neuroglia by pathogenic RABV impairs their immunomodulatory function and thus represents a key step in RABV pathogenesis, which may contribute significantly to the establishment of lethal rabies disease.
Finally, utilizing the full volumetric acquisition power of LSFM, a further refined version of the established 3D imaging pipeline facilitated a detailed mesoscopic investigation of the distribution of SARS-CoV-2 in the respiratory tract of the ferret animal model (publication V). Particularly for this newly-emerged pathogen of global concern, in-depth knowledge of host-pathogen interactions is critical. By preserving the complete spatio-morphological context of virus infection in the ferret respiratory tract, this thesis provided the first specific 3D reconstruction of SARS-CoV-2 infection and the first report of 3D visualization of respiratory virus infection in nasal turbinates altogether. 3D object segmentation of SARS-CoV-2 infection in large tissue volumes identified and emphasized a distinct oligofocal infection pattern in the upper respiratory tract (URT) of ferrets. Furthermore, it corroborated a preferential replication of SARS-CoV-2 in the ferret URT, as only debris-associated virus antigen was detected in the lower respiratory tract of ferrets, thus providing crucial information on the spatial distribution of SARS-CoV-2.
Organic molecules are the carbon-based complex of several atoms, is an innovative and essential element to create nano-structural platforms, as a building block in the
field of organic electronics and organic spintronics. Because of its variety and functionality via widely studied synthetic methods, molecules have played an important role in electronics as not only a transport channel in bulk form but also a tuning layer
at the interface of hetero structures. The potential of molecular layers has also stood out in spintronics, owing to its mass-low composition producing long spin life time.
Organic materials can be employed in spintronics applications, benefiting from their low cost, ease of processing, and chemical tunability. Beyond this advantage, the configuration
of molecules on a metal film displays unique phenomena as it can control the molecular spins and interfacial coupling between them, resulting in the emergence
of molecular spinterface.
This thesis work focuses on identifying the interfacial properties between the ferromagnet and the Phenalenyl (PLY) based metal complexes. The growth morphology study of the copper-phenalenyl Cu-PLY based molecules influence the electronic coupling between the molecular layer and the ferromagnet. Zinc- Phenalenyl (ZMP) molecule already have been studied [1] by demonstrate the formation of a spinterface,
resulting interface magneto resistance (IMR) close to room temperature. The
spinterface formation leads to the unique property, that a magnetic tunnel junction
with a ZMP barrier requires only one ferromagnetic metal layer, while the other ferromagnetic layer is formed in the organic barrier directly at the ferromagnet/organic
barrier interface. Here we compare Phenaleny, Copper-Phenaleny Cu-PLY and Zincmethyl- phenaleny molecule based MTJ electrical and magnetic properties which will
be suitable for tunnel barrier and can be used for stable memory devices. We tune the magnetic property of ferromagnet and forma hybrid interface without any oxide layers in between the ferromagnet and molecular layers. The tuning of magnetic properties
via the molecular approach will certainly extend versatile functionalities of organic spinterfaces.
Objective: To compare the effectiveness and complications of intraligamentary anesthesia
(ILA) with conventional inferior alveolar nerve block (IANB) during injection and dental
treatment of mandibular posterior teeth.
Materials and Methods: In this randomized, prospective clinical trial, 72 patients (39 males, 33
females) patients scheduled for dental treatment of mandibular posterior teeth, were randomly
allocated to ILA group (n=35) received ILA injection or IANB group (n=37) received the
conventional IANB. Our primary outcome was to assess pain and stress (discomfort) during the
injection and dental treatment, using the Numeric Rating Scale (NRS) from 0 to 10 (0 = no
pain, 10= the worst pain imaginable). Whereas; recording 24 hours postoperative complications
were our Secondary outcomes.
Results: Patients in ILA group reported significantly less pain during injection when compared
with IANB group (p=0.03). While pain during dental treatment was similar in both groups
(p=0.2). Patients in both groups also reported similar low values of discomfort during treatment
(p= 0.7). Although no signs of nerve contact or any other postoperative complications were
observed, five patients in IANB group (none in ILA group) reported temporary irritations
Conclusion: This study showed equivalent effectiveness of both intraligamentary anesthesia
and conventional inferior alveolar nerve block, for pain control during routine dental treatment
of mandibular posterior teeth. Nevertheless, ILA showed significantly less pain during
injection. No major postoperative complications in both groups were observed.
Clinical Relevance: ILA could be considered as an effective alternative for routine dental
treatment.
Modern space missions depend more and more on electric propulsion devices for in-space
flights. The superior efficiency by ionizing the feedgas and propelling them using electric
fields with regard to conventional chemical thrusters makes them a great alternative. To
find optimized thruster designs is of high importance for industrial applications. Building
new prototypes is very expensive and takes a lot of time. A cheaper alternative is to rely
on computer simulations to get a deeper understanding of the underlying physics. In order
to gain a realistic simulation the whole system has to be taken into account including the
channel and the plume region. Because numerical models have to resolve the smallest time
and spatial scales, simulations take up an unfeasible amount of time. Usually a self-similarity
scaling scheme is used to greatly speed up these simulations. Until now the limits of this
method have not been thoroughly discussed. Therefore, this thesis investigates the limits
and the influence of the self-similarity scheme on simulations of ion thrusters. The aim
is to validate the self-similarity scaling and to look for application oriented tools to use
for thruster design optimization. As a test system the High-Efficiency-Multistage-Plasma
thruster (HEMP-T) is considered.
To simulate the HEMP-T a fully kinetic method is necessary. For low-temperature plasmas,
as found in the HEMP-T, the Particle-in-Cell (PIC) method has proven to be the best
choice. Unfortunately, PIC requires high spatial and temporal resolution and is hence
computationally costly. This limits the size of the devices PIC is able to simulate as well
as limiting the exploration of a wider design space of different thrusters. The whole system
is physically described using the Boltzmann and Maxwell equations. Using these system
of equations invariants can be derived. In the past, these invariants were used to derive a
self-similarity scaling law, maintaining the exact solution for the plasma volume, which is
applicable to ion thrusters and other plasmas. With the aid of the self-similarity scaling
scheme the computation cost can be reduced drastically. The drawback of the geometrical
scaling of the system is, that the plasma density and therefore the Debye length does not
scale. This expands the length at which charge separation occurs in respect to the system
size. In this thesis the limits of this scaling are investigated and the influence of the scaling
at higher scaling factors is studied. The specific HEMP-T design chosen for these studies is
the DP1.
Because the application of scaling laws is limited by the increasing influence of charge separation with increased scaling, PIC simulations still are computationally costly. Another approach to explore a wider design space is given using Multi-Objective-Design-Optimization
(MDO). MDO uses different tools to generate optimized thruster designs in a comparatively
short amount of time. This new approach is validated using the PIC method. During this
validation the drawback of the MDO surfaces. The MDO calculations are not self-consistent
and are based on empirical values of old thruster designs as input parameters, which not
necessarily match the new optimized thruster design. By simulating the optimized thruster
design with PIC and recalculate the former input parameters, a more realistic thruster design is achieved. This process can be repeated iteratively. The combination of self-consistent
PIC simulations with the performance of MDO is a great way to generate optimized thruster
designs in a comparatively short amount of time. The proof of concept of such a combination
is the pinnacle of this thesis.
Abstract
The article focuses on whether and to which extent heritage bilinguals make use of their heritage language while developing receptive skills in unknown languages which are either related to the majority language or the heritage language. Thirty four adolescent heritage speakers of Russian and Polish and a control group of thirty three German monolinguals were first exposed to a text in Swedish. The monolingual control group was matched with regard to age, educational background, foreign languages learned at school as well as proficiency in English. All participants had to determine the parts of speech of ten items from the text, translate them into German, and extract the main pieces of information from the text. In a second step, the heritage speakers completed a similar task with an unknown Slavic target language (Serbian). The results revealed no bilingual advantage of the heritage speakers over the monolinguals in the Swedish task. Furthermore, they scored lower in the Serbian trial. We treat this as evidence that access to the heritage language as a resource for solving these tasks is limited compared to the majority language and English which might be due to lesser metalinguistic knowledge about structures of the heritage language.
Trametes spec. laccase (EC 1.10.3.2.) mediates the oxidative coupling of antibiotics with sulfonamide or sulfone structures with 2,5-dihydroxybenzene derivatives to form new heterodimers and heterotrimers. These heteromolecular hybrid products are formed by nuclear amination of the p-hydroquinones with the primary amino group of the sulfonamide or sulfone antibiotics, and they inhibited in vitro the growth of Staphylococcus species, including multidrug-resistant strains.
There has been a substantial evolution of anti-cancer therapies in the last decade, leading
to improved prognosis and disease-free survival of patients with melanoma. Due to the
number of patients that still develop resistance or to the high systemic toxicity and side
effects, new treatment options are still needed. Regardless of the type of therapeutic
interventions (except surgery), the reactive oxygen species (ROS) are a by-product or
contribute to the action mechanism of many successful therapies. In this context, medical
cold atmospheric plasma (CAP) arises as a promising tool, and studies are important to
prove the effectiveness of this new device.
Since combination therapies are the current standard way to treat melanoma, we explored
candidates to be combined with cold atmospheric plasma, with potential to become a
therapeutic option in the combination. Here, we tested the radiotherapy and clinically safe
mitochondrial inhibitor drugs. In the end of the study, both, ionizing radiation and four
mitochondrial-targeted-drugs showed to be promising candidates for the combination with
CAP. These combinations induced increased cytotoxicity and modulated the immune
system improving the anti-tumor immune response. Mitochondrial damage seems to be
the first stage to induce cellular deficiency and culminate in apoptotic cell death.
Furthermore the release of GM-CSF contribute to a pro inflammatory state and immune
system activation.
This dissertation showed that CAP serves as an excellent tool to boost melanoma cell
death and induce anti-tumor response. In addition, in our proposed therapeutic
combination, the intensity of plasma treatment could be decreased possibly resulting in
less systemic toxicity. Our results serves as model to be studied in other tumor entities.
Infectious diseases remain a significant threat to the wellbeing of humans and animals
worldwide. Thus, infectious disease outbreaks should be investigated to understand the
emergence of these pathogens, leading to prevention and mitigation strategies for future
outbreaks. High-throughput sequencing (HTS) and bioinformatic analysis tools are reshaping
the surveillance of viral infectious diseases through genome-based outbreak investigations. In
particular, analyzing generic HTS datasets using a metagenomic analysis pipeline enable
simultaneous identification, characterization, and discovery of pathogens.
In this thesis, generic HTS datasets derived from the 2018-19 WNV epidemic and USUV
epizooty in Germany were evaluated using a unified pipeline for outbreak investigation and an
early warning system (EWS). This pipeline obtained 34 West Nile virus (WNV) whole-genome
sequences and detected several sequences of Usutu virus (USUV) and other potential
pathogens. A few WNV and USUV genome sequences were completed using targeted HTS
approaches. Phylogenetic and phylogeographic inferences, reconstructed using WNV wholegenome sequences, revealed that Germany experienced at least six WNV introduction events.
The majority of WNV German variants clustered into the so-called “Eastern German clade
(EGC),” consisting of variants derived from birds, mosquitoes, a horse, and human cases. The
progenitors of the EGC subclade probably circulated within Eastern Europe around 2011. These
flavivirus genome sequences also provided substantial evidence for the first reported cases of
WNV and USUV co-infection in birds. Phylogenetic inferences of USUV genome sequences
showed the further spread of the USUV lineage Africa 3 and might indicate the overwintering
of the USUV lineage Europe 2 in Germany. Among viral sequences reported in the EWS, Hedwig
virus (HEDV; a novel peribunyavirus) and Umatilla virus (UMAV; detected in Europe for the
first time) were investigated using genome characterization, molecular-based screening, and
virus cultivation since these viruses were suspected of causing co-infections in WNV-infected
birds. The EWS detected overall 8 HEDV-positive and 15 UMAV-positive birds in small sets of
samples, and UMAV could be propagated in a mosquito cell culture Future studies are necessary
to investigate the pathogenicity of these viruses and their role in the health of wild and captive
birds.
In conclusion, this study provided a proof-of-concept that the developed unified and
generic pipeline is an effective tool for outbreak investigation and pathogen discovery using the
same generic HTS datasets derived from outbreak and surveillance samples. Therefore, this
thesis recommends incorporating the unified pipeline in the key response to viral outbreaks to
enhance outbreak preparedness and response.
Survival, development, and function of cells depend on numerous signaling pathways or-
chestrating the response to external and internal stimuli. Besides the well-established signaling through reversible phosphorylation, the concept of specific, spatio-temporal redox modifi-
cations of protein cysteinyl and methionyl side chains that regulate the biological function of these proteins is supported by an overwhelming amount of data. Although the specific reduction of protein redox modifications has been studied intensively, the oxidation of protein side chains was thought to be a result of so-called ‘oxidative stress’. However, this term has been increasingly challenged, since signaling pathways depend on specific, spatio-temporal oxidation of target proteins, most likely catalyzed by specific enzymes. The discovery of MICAL (molecule interacting with CasL) proteins evinced
the first examples of specific oxidases in signal transduction in the redox regulation of cellular functions.As part of the semaphorin signaling pathway, MICAL proteins were characterized to stereospecifically oxidize methionyl residues in actin, thereby regulating actin deolymerization, a process important in neurogenesis and cell migration. This oxidation can be reversed by the specific methionine-R-sulfoxide eductase B1. Besides the regulation of actin dynamics, MICALs are involved in the regulation of cell proliferation and
apoptosis, and the production of hydrogen peroxide may qualify them as specific oxidases also for cysteinyl residues.
This work presents the first experimental investigation of the gas balance on the optimized modular stellarator Wendelstein 7-X (W7-X). A balance of all injected and removed particles and a measurement of internal particle reservoirs allows inference of the bound particle reservoir in the wall, which is of interest due to its effects on plasma density control and fuel retention. Different scenarios of the gas balance are presented with data from the operation campaign 1.2 with an inertially cooled graphite divertor. Both net outgassing and net retention scenarios are presented and W7-X is found to operate stable in a wide range of scenarios with varying wall conditions.
Since fusion experiments are conducted in ultra-high vacuum, suitable gauges are required for total and partial pressure measurement. The challenges and opportunities of the operation of pressure gauges in the steady magnetic field extending beyond plasma pulses are discussed. The performance of newly improved neutral pressure gauges, based on crystal cathode emitters is quantified. These provide improved operational robustness since they can be operated for long periods of time in strong magnetic fields. A crystal cathode setup and and its operation performance is presented along with a fast calibration scheme.
Partial pressure measurements provide additional important information complementing the total neutral pressure measurements, and allowing additional physics insights. As part of this thesis work, a new diagnostic of this kind was implemented on W7-X, the so-called diagnostic residual gas analyzer (DRGA). It provides a wealth of information on various neutral gas species, with a relatively high time resolution - of order a few seconds. The diagnostic setup and its first results are presented in this thesis.
The comment on Cristina Lafont’s book includes two main points. (1) Minipublics do not necessarily stand in opposition to political theories that justify electoral democracy and participatory conceptions of deliberative democracy. In contrast to such a view, I argue that minipublics should be combined with electoral and participatory forms of democracy. (2) A deliberative concept of accountability may overcome some of the shortcomings of the traditional, voluntaristic concepts of democratic accountability.
The substance of procedures
(2021)
In Democracy without Shortcuts, Cristina Lafont identifies proceduralist or ‘deep pluralist’ conceptions of democracy alongside epistemic and lottocratic approaches as shortcuts that avoid the more challenging but, in her view, preferable path of engaging with and attempting to sway competing views, values and beliefs of fellow citizens. I argue that with the wholesale dismissal of proceduralist accounts of democracy Lafont herself takes two shortcuts: The first concerns the characterization of deep pluralism as unable to explain substantive disagreement after a decision is settled, and the second undervalues proceduralism’s ability to evaluate and criticize the substance of the political decision-making process. While her critique is fitting for minimalist conceptions of proceduralism, a theory of normative proceduralism shares many objectives with Lafont’s vision of a participatory deliberative democracy. Integrating those approaches instead of dismissing proceduralism outright would render her project appealing to theorists who would not otherwise consider themselves deliberative democrats.
The investigation of complex molecular systems by molecular dynamics simulations has been successfully established and proven as a standard method during the last decades. The use of highly optimized algorithms and steadily increasing, generally available computing resources enables even larger and longer simulations. However, the dynamics of the system itself is not accelerated, and it can be trapped in low energy minima that can only be overcome slowly. A number of methods have therefore been developed to address this problem.
Within the context of this dissertation, a novel algorithm based on replica exchange was developed to solve problems with existing methods, which can now be used for large molecular systems with a low resource consumption. Parameter dependence was systematically evaluated and optimized to define guidelines for correct application. This algorithm was successfully applied to various pharmaceutical and biochemical problems, such as protein folding or protein-protein interactions.
This thesis describes how the data of the Langmuir probes in the Wendelstein 7-X (W7X) Test Divertor Unit (TDU) were evaluated, checked for consistency with other diagnostics and used to analyse plasma detachment.
Langmuir probes are an electronic diagnostic, and were among the first to be used in plasma physics to determine particle fluxes, potentials, temperatures and densities.
W7X is a large, advanced stellarator, magnetic confinement fusion experiment, operated at the Max-Planck-Institut for Plasma Physics(IPP) in Greifswald, Germany.
Its TDU is an uncooled graphite component, shaped and positioned to intercept the convective heat load of the plasma.
Detachment describes a desirable operation state of strongly reduced loads on this component.
The evaluation of Langmuir probe data relies heavily on models of the sheath, formed at the interface between plasma and a solid surface, to infer plasma parameters from the directly measured quantities.
Multiple such models are analysed, generalised, and adapted to our use case.
A detailed comparison is made to determine the most suitable model, as this choice strongly affects the predicted parameters.
Special attention is paid to uncertainties on the parameters, which are determined using a Bayesian framework.
From the inferred parameters, heat and particle fluxes are calculated.
These are also indirectly measured by two other, camera-based diagnostic systems.
Observations are compared to test the validity of assumptions and calculations in the evaluation of all three diagnostics by checking their results for consistency.
The first comparison, with the infrared emission camera system, shows good agreement with theoretical predictions and reported measurements of the sheath transmission factor, for which we derive and measure a value in W7X.
Parameter dependencies in the quality of this agreement hint at remaining issues.
The second comparison, with the Hydrogen alpha photon flux camera system, shows significant discrepancy with expectations.
These are argued to originate from systematic differences in the measurement locations, which are quantified and related to the magnetic topology.
Langmuir probe observations of individual discharges are analysed to discuss conditions under which detachment occurs, transition into that state and fluctuations observed prior to and during it.
A spatial parametrisation of the data is developed and used to facilitate this.
These observations contribute to the larger aim of understanding particle balance control and fusion plasma edge processes.
Three-dimensionally extended dusty plasmas containing mixtures of two particle species of different size have been investigated on parabolic flights. To distinguish the species even at small size disparities, one of the species is marked with a fluorescent dye, and a two-camera video microscopy setup is used for position determination and tracking. Phase separation is found even when the size disparity is below 5%. Particles are tracked to obtain the diffusion flux, and resulting diffusion coefficients are in the expected range for a phase separation process driven by plasma forces. Additionally, a measure for the strength of the phase separation is presented that allows to quickly characterize measurements. There is a clear correlation between size disparity and phase separation strength.
Molecular dynamics simulations of binary dusty plasmas have been performed and their behavior with respect to the phase separation process has been analyzed. Here as well, it is found that even the smallest size disparities lead to phase separation. The separation is due to the force imbalance on the two species and the separation becomes weaker with increasing mean particle size.
In the second part of the thesis, Experiments on self-excited dust-density waves under various magnetic fields have been performed. For that purpose, different dust clouds of micrometer-sized dust particles were trapped in the sheath of a radio frequency discharge. The self-excited dust-density waves were studied for magnetic field strengths ranging from 0 mT to about 2 T. It was observed that the waves are very coherent at the lowest fields (B < 20 mT). At medium fields (20 mT < B < 300 mT), the waves seem to feature a complex competition between different wave modes before, at even higher fields, the waves become more coherent again. At the highest fields (B > 1 T), the wave activity is diminished. The corresponding wave frequencies and wavenumbers have been derived. From the comparison of the measured wave properties and a model dispersion relation, the ion density and the dust charge are extracted. Both quantities show only little variation with magnetic field strength.
Frequency of biopsies after the disclosure of incidental findings from whole-body research MRI
(2021)
Large-scale, population-based cohort studies gather a range of data from participants over extended periods of time with the goal of providing researchers with information regarding the health status, prevalence of disease, and risk factors in a regional population. Examinations conducted in the context of population-based studies include imaging and laboratory testing and may yield abnormal results, also called incidental findings. According to predetermined disclosure policies, incidental findings may be disclosed to study participants. Evidence shows that the disclosure of incidental findings results in medical follow-up as research participants and their physicians seek to clarify the significance of findings.
This work examined the effect of disclosing incidental findings from whole-body MRI (wb-MRI) on the frequency and organ system of biopsies in participants in the Study of Health in Pomerania (SHIP), a population-based cohort study in Mecklenburg-West Pomerania. As most of the incidental wb-MRI findings involved unclear masses and lesions, we hypothesized that the disclosure of wb-MRI findings would lead to an increase in diagnostic biopsies. Based on current data showing that the outcomes of incidental imaging findings are frequently clinically irrelevant, we further hypothesized that an increase in biopsies would not translate to a clinically relevant increase in diagnoses of malignancies. We also took disclosed laboratory findings into account, as they were disclosed to all SHIP participants and may play a role in the decision to pursue a biopsy.
We found that the rate of biopsies increased after participation in SHIP and disclosure of incidental MRI and laboratory findings. Overall, most biopsies showed nonmalignant findings, indicating likely overdiagnosis and overtesting resulting from the disclosure of incidental findings in our cohort. However, subgroups of participants with disclosed MRI findings had a higher proportion of biopsies revealing premalignant or malignant diagnoses after SHIP, indicating that the applied decision rules for disclosure of MRI findings led to the identification of individuals with an elevated risk for premalignant or malignant diagnoses. The clinical relevance of these diagnoses is unclear and overdiagnosis cannot be ruled out.
In summary, we recommend more restrictive disclosure policies for incidental imaging findings in research to protect research participants from overtesting and to reduce bias. Further studies regarding the long-term morbidity and mortality of participants are needed to better understand the therapeutic impact of the disclosure of incidental wb-MRI findings in the research setting.
Adaptation mechanisms within the B cell composition for successful human and murine pregnancies.
(2021)
Introduction
A well-balanced immune maternal status is essential for favourable outcome of pregnancy. Due to their complexities, not all immune adaptations that promote tolerance during pregnancy are known. To understand the adaptation of the B cell compartment, we analysed and compared B cell lymphopoiesis in different lymphoid tissues in a number of murine models.
Furthermore, we focused on the humoral immune response during pregnancy. We analysed immunoglobulin profiles in human subjects and mice during pregnancy.
These cellular alterations are subject to the influence of chemokines, among others. Therefore, we assessed serum levels of B cell activation factor to clarify its effects during pregnancy.
Methods
For analysis of the human peripheral B cell compartment, peripheral blood samples from age-matched non-pregnant and pregnant women without pregnancy complications, immunological disease or acute/chronic inflammation were collected and sub-classified into four different groups: non-pregnant, and first, second, or third trimester of pregnancy. The experiments, based on a mouse model, were performed with 8-week-old female mice: clinically healthy non-pregnant (CBA/J (H2k)), pregnant mice with normal gestation (BALB/c (H2d) x CBA/J (H2k)), and mice with pregnancy loss (DBA/2J (H2d) x CBA/J (H2k)). Subsequently, peripheral blood mononuclear cells from blood and lymphatic organs were isolated following standard protocols. The B cell analysis was performed by flow cytometry. The immunoglobulin serum levels of the human and murine subgroups were quantitated using Bio-Plex isotyping assay and analysed by a Bio-Plex reader. To quantify B cell activating factor (BAFF) in serum of pregnant and non-pregnant mice a BAFF enzyme-linked immunosorbent assay was used. The concentrations were determined by using a FLUOstar OPTIMA microplate reader. All statistical analyses were performed using the Kruskal–Wallis test with Dunn’s post-test in GraphPad Prism software. P values of < 0.05 were considered statistically significant.
Results
We were able to demonstrate B cell lymphopenia in mice bone marrow downstream of pre-pro B cells, irrespective of pregnancy outcome. The mature bone marrow B cells did not show this adjustment mechanism during normal gestation.
Closer inspection of the splenic tissue revealed expansion and activation of marginal zone B cells in mice with a normal pregnancy. However, this was not observed in mice suffering from pregnancy disturbances. Natural antibodies secreted from marginal zone B cells were also present at higher concentrations in serum of pregnant mice, compared to non-pregnant animals.
We also found significantly higher levels of natural antibodies in serum of pregnant women compared to non-pregnant age-matched controls. Analysis showed significantly lower levels of BAFF in mice with normal pregnancy as compared to non-pregnant mice.
Conclusions
We are able to show mechanisms within the B cell compartment as well as the change within the natural antibodies that might be crucial for successful pregnancy in both humans and mice. Furthermore, BAFF seems to play a central role as a mediator of peripheral B cell compartment and B cell lymphopoiesis in the bone marrow for successful pregnancy.
Midges are small mosquitoes that can transmit pathogens to susceptible hosts through their blood-sucking act. They are known as biological vectors that can transmit the bluetongue virus (BTV) and the Schmallenberg virus (SBV) to ruminants, among others. Various vector control measures can be used to curtail the spread of the virus during an epidemic. However, for effective vector measures, it is essential to have profound knowledge of the role of biting midges as vectors, as well as their biology and phenology. For several years, midges were not in the focus of research and there are still considerable gaps in knowledge. Therefore, the present work examines various aspects of biting midges of the genus Culicoides, whose function as vectors of the Schmallenberg virus was already proven at the beginning of the project.
The aim of the first part of this work was to determine the percentage of infected midges in various German areas in order to determine the influence of Culicoides midges within the virus epidemic. For this purpose, samples, collected during 2011 and 2012 as part of monitoring projects, were analysed. Additionally, in early 2013, various farms in southern and eastern regions of Germany, where SBV was considered to be largely absent, were equipped with UV traps. The small number of virus-positive samples did not allow a more precise assessment of the viral spread in culicoid midges. Instead, it revealed the importance to conduct targeted samplings of its vectors during an acute outbreak. Additionally, the presented results and statements made by several animal owners, gave reason to believe, that SBV must have affected the southern and eastern parts of Germany earlier than actually assumed. This would consequently have led to an increased immunity in host animals, which provides a reasonable explanation for the low positive values and is in agrement with the statements made by various farmers.
The second part of this work identifies the conditions and surrounding factors under which acute SBV diseases emerged in ruminants in the cold winter months of 2012/2013. After the diagnosis of several acute SBV infections of sheep in a sheep pen in Mecklenburg-Western Pomerania, culicoid midge activity could be proven. This demonstrates that, suitable conditions for its vectors given, an infection of SBV can also take place during wintertime. A more detailed analysis of the surrounding conditions revealed, that the outdoor temperatures during infection were consistently at values of at least 5-9 ° C for several consecutive days, which enabled the flight and blood-sucking activity of the midges within
the shelter.
Midge activity during wintertime represents a crucial component in understanding how the virus can outlast the cold season. A constant midge presence could lead to a low but permanent infection rate throughout the cold months, enabling a recurrence of the pathogen the following year. Instead, a longer vector-free timeperiod would point to other mechanisms that allow the virus to re-occur in Germany on a yearly basis. Thus, the acute cases of SBV infections in sheep rose the question of critical threshold temperatures, representing the beginning of midge activity. The investigation of several stables sheltering cattle, horse or sheep addressed potential differences between indoor and outdoor activity and whether the type of host animal has an influence on the beginning of the flight. In the third part of this work, a long vector-free period and several differences in the onset of midge activity between different types of host animals could be detected. It could also be illustrated that the progression of the flight began differently depending on the present type of host animal/type of stable. For all cattle stables and the sheep barn the first midge activity was measured indoors, whereas for horses, culicoid midges were found to become active either at the same time or almost simultaneously inside and outside the animal shelters. This suggests that the horse stables do not represent good breeding sites for midges, which might be attributed to husbandry practices. In addition, it was possible to determine specific threshold temperatures for the different types of host animals and for various midge species. Altogether, the late beginning of flight, measured at the beginning of March, was surprising. This raises more questions of alternative mechanisms enabling the virus to outlast the winter months. The documentation of species-specific threshold temperatures can be a useful tool f.i. within automated large stables to keep indoor temperatures under the threshold value in order to postpone the onset of culicoid activity of various vector species. This may help to prevent virus transmissions during winter or to evoke a delay in spring, making it more difficult for the virus to overwinter.
To be able to start instant defense measures during an ongoing virus epidemic, which is transmitted by Culicoides midges, reducing the ground-living midge larvae offers a promising option during the warm season. For targeted vector control measures, it is important to know the breeding sites of culicoid midge species. Therefore, four agriculturally used biotopes were sampled and compared to four biotopes of a forest-dominated area. The results clearly show that meadows per se are not suitable breeding habitats for Culicoides
spp. Only the influence of livestock animals induces their potential as developmental sites. The various biotopes of the forest-dominated region were less subject to anthropogenic influences. Although fewer individual midges were found here, it displayed a higher biodiversity than the agricultural habitats. These results demonstrate once more the potential of forests in regards to the preservation of biodiversity. In Particular, the alder on fen site revealed most midge species and also the highest number of collected specimens among the studied biotopes. That illustrates the high impact of this specific humid type of habitat in respect to species diversity and the need of its perpetuation.
As part of this work, new breeding sites for a variety of culicoid species were identified and assigned to the usually rather short profiles of known Culicoides species. For one part, previous observations of chosen substrates could be consolidated. Furthermore, new breeding substrates were identified. Additionally, information of abiotic factors such as ph-value, soil moisture or organic compound of all sampled breeding substrates obtained from a soil analysis, extended the knowledge about the species-specific choice of breeding habitats and their characteristical traits. The additional knowledge about potential breeding substrates and their soil factors might be useful for future epidemiological modelling approaches. It can also raise the effectiveness and accuracy of targeted vector control measurements during an epidemic outbreak. Therefore, it may indirectly contribute to the preservation of endangered rare species. However, there is still an enormous need for more research before this goal can be fully achieved.
Due to demographic changes, medical and nursing care in Germany faces new challenges. Combined with the aging of the population, an increase in age-associated diseases, including dementia, is to be expected. In addition to the increase in the number of persons with certain age-specific diseases, the aging of the German population also results in an increase in the number of persons with multiple diseases. The coexistence of dementia and comorbidity in people with dementia creates complex challenges for ambulatory and clinical care. The existence of comorbidity also leads to significantly higher medical costs.
Implementing new collaborative care programs and redistributing the responsibilities among outpatient care providers in the ambulatory care of patients may be one approach to ensure and improve the life and care situation of people with dementia. Collaborative Dementia Care Management, with the concept of support of general practitioners by specific qualified nurses demonstrated an adequate and effective approach for the compensation of supply deficits of PwD in the primary care sector. The aim of the dissertation is the health economic analysis of comorbidities in dementia and the evaluated Dementia Care Management of the DelpHi-MV study as an innovative approach for care and treatment of comorbidities in people with dementia. It is assumed that the cost of care for PwD varies depending on comorbidity and socio-demographic and clinical characteristics. Therefore, the health care costs of people with dementia are calculated and the association between these care costs and comorbidity and socio-demographic and clinical factors of PwD was analyzed. In addition, we aimed to detect important subgroups (e.g. PwD with low, high or very high comorbidity) who benefit most from the DCM intervention and for whom a significant effect on costs, Quality-adjusted Life Years (QALY) and on the individual cost-effectiveness could be achieved, considering different sociodemographic and clinical characteristics like comorbidity.
In the sample of PwD comorbidity was highly prevalent. 47% of PwD had a very high, 37% a high and only 16% a low comorbidity in addition to dementia. The most prevalent co-existing comorbidity were diabetes mellitus (42%), peripheral vascular disease (28%) and cerebrovascular disease (25%). Total costs significantly increased by 528 € (SE=214, CI 95%=109-947, p=0.014) with each further comorbidity, especially due to significantly higher cost for medication and medical aids. Compared with a low comorbidity, a very high comorbidity was significantly associated with 818 € (SE=168, CI 95%= 489-1147, p<0.001) higher medication costs and 336 € (SE=161, CI 95%=20-652, p=0.037) higher cost for medical aids. There was no significant association between a higher comorbidity and cost for formal care services. The probability of DCM being cost-effective at a willingness-to-pay of 40,000€/QALY was higher especially in PwD having a high comorbidity (96% vs. 26% for patients with a low comorbidity), in females (96% vs. 16% for males), in those living alone (96% vs. 26% for those living not alone) and in those being moderately to severely cognitively (100% vs. 3% for patients without cognitive impairment) and functionally impaired (97% vs. 16% for patients without functional impairment).
Comorbidity in PwD represents a substantial financial burden on healthcare payer’s and is a challenge for patients, healthcare providers and the health system. Innovative approaches are needed to achieve a patient-oriented management of treatment and care in comorbid PwD to reduce long-term costs. Collaborative dementia care management is one approach to solve these problems in dementia care. Thereby, patients characteristics significantly affect the cost-effectiveness of collaborative care. Female patients, patients living alone, and those with a high comorbidity as well as those being moderately cognitively and functionally impaired benefit most from DCM. For those subgroups of patients, healthcare payers could gain the highest cost savings and the highest effects on QALYs when the DCM approach will be implemented.
This thesis discusses three publications in the field of dusty plasmas.
In the first section, measurements of the ir absorption of silica nanoparticles confined in an argon radiofrequency plasma discharge using a Fourier transform infrared spectrometer have been performed. By varying the gas pressure of the discharge and duty cycle of the applied radiofrequency voltage, a shift of the absorption peak of silica is observed. This shift is attributed to charge-dependent absorption features of silica. The charge-dependent shift has been calculated for silica particles, and from comparisons with the experiment the particle charge has been retrieved using the infrared phonon resonance shift method. With the two different approaches of changing the gas pressure and altering the duty cycle, one is able to deduce a relative change of the particle charge with pressure variations and an absolute estimate of the charge with the duty cycle.
In the second part, infrared (IR) absorption spectra of melamine-formaldehyde (MF) microparticles confined in an rf plasma are studied at different plasma conditions. Several absorption peaks have been analysed in dependence of plasma power and their temporal evolution. For comparison, the IR absorption spectra of heated MF microparticles without plasma exposition are used to determine the general influence of the temperature on the IR spectra. Measuring the temperature of the particles inside the plasma shows that the temperature is not the only process changing the particles' IR spectra. Chemical changes of the MF particles with increasing plasma power influence the absorption peak structure.
Finally, experiments on dust clusters trapped in the sheath of a radio frequency discharge have been performed for different magnetic field strengths ranging from a few milliteslas to 5.8 T. The dynamics of the dust clusters are analyzed in terms of their normal modes. From that, various dust properties such as the kinetic temperature, the dust charge, and the screening length are derived. It is found that the kinetic temperature of the cluster rises with the magnetic field, whereas the dust charge nearly remains constant. The screening length increases slightly at intermediate magnetic field strengths. Generally, the dust properties seem to correlate with magnetization parameters of the plasma electrons and ions, however only to a small degree.
Crab Spa, is a stable diffuse-flow hydrothermal vent site located at the 9°N hydrothermal vent field on the East Pacific Rise (EPR). Remarkably, the physicochemical conditions at Crab Spa have remained largely constant since its discovery in 2007 providing a uniquely stable environment in which a well-adapted and stable microbial community has evolved. This microbial community is dominated by the class Campylobacteria, accounting for up to 90% of the community. Little is known, however, about the metabolic pathways that allow the Campylobacteria to dominate the bacterial community at Crab Spa. To address this fundamental question, a two-pronged approach was taken consisting of first determining the dominant metabolic pathways in situ, and second to study those same metabolic pathways and their controls in more detail under defined conditions in vitro in the model campylobacterium Sulfurimonas denitrificans.
Metagenomic analysis of two environmental samples provided the blueprint to determine the metaproteomic profile of the Crab Spa microbial community. This allowed to identify the dominant organisms and their major metabolic pathways sustaining the microbial community at Crab Spa. About 90% of the genes for transcription and protein synthesis of the metagenome sequences belonged to just three genera of Campylobacteria: Sulfurimonas, Sulfurovum and Arcobacter. The metaproteomic analyses confirmed that the active microbial community was dominated by Campylobacteria, carrying out carbon fixation via the reductive TCA cycle predominantly fueled by the oxidation of sulfide and sulfur with nitrate and oxygen. The analysis further revealed that pathways might be partioned between different members of the bacterial community. Proteins involved in electron acceptor–related pathways, in particular denitrification, accounted for up to 20% of the whole metaproteome, which could be seen as an adaptation to the scarcity of electron acceptors at Crab Spa. Conversely, proteins related to electron donor–associated metabolic pathways accounted for less than 0.1% of the metaproteome, possibly in response to the high concentration of the electron donor. To follow up on this hypothesis, chemostat experiments with S. denitrificans were performed under either electron-acceptor or -donor limitation. These experiments confirmed that electron-acceptor limitation lead to the elevated expression of electron-acceptor proteins. However, a higher expression of electron-donor proteins was not observed under electron-donor limitation. Besides hydrogen sulfide, elemental sulfur has the potential to serve as an important electron donor at Crab Spa. However, up to know no information was available on how Campylobacteria might be able to utilize elemental sulfur. For this, S. denitrificans grew with either thiosulfate or cyclooctasulfur (S8) as sole electron donors and its transcriptome and proteome was compared. The results revealed a differential expression of the SOX sulfur oxidation pathway (soxCDYZ and soxABXYZ) in response to the two different sulfur compounds. Based on these findings, a model for the oxidation of cylcooctasulfur was proposed that also applies to other sulfur-oxidizing Campylobacteria and helps in the interpretation of environmental metatranscriptomic and –proteomic data (Götz, Pjevac, et al., 2018; Lahme et al., 2020). The presented results help to better understand the microbial processes at hydrothermal vents.
In this thesis, the transport properties of topological insulators are investigated. In contrast to trivial insulators, topological insulators possess conducting boundary states which cross the bulk energy gap that separates the highest occupied electronic band from the lowest unoccupied band. The materials used in this thesis are three-dimensional topological insulators with time-reversal symmetry. Their associated helical surface states are protected against elastic backscattering by Kramers degeneracy. The unique properties of the helical surface states can be utilized to generate spin-polarized currents at the surface of topological insulators and to control their propagation direction. This makes them a promising material class for the field of spintronics.
Here, we perform photocurrent scans of topological insulator Hall bar and nanowire devices. From these measurements, we obtained two-dimensional maps of the polarization-independent and helicity-dependent components of the photocurrents.
We find that the polarization-independent component is dominated by the Seebeck effect and thus driven by thermoelectric currents. On the other hand, the helicity-dependent component is driven by the spin-polarized currents that emerge from the topologically non-trivial helical surface states via the circular photogalvanic effect.
First and foremost, our experiments demonstrate that topological insulator nanowires provide a promising platform for the generation of spin-polarized currents, whose direction can be controlled via the helicity of the excitation light. They also highlight the importance of analysing the spatial distribution of the photocurrent, as we observe a strong enhancement of the spin-polarized current and the thermoelectric current at the interface between the nanowire and the metallic contacts. As our analysis shows, the thermoelectric current is enhanced by the Schottky effect and the spin-polarized current is amplified by the spin Nernst effect. In addition, the spin Nernst effect is also present in Hall bar devices and manifest as an enhancement of the spin-polarized current along the Hall bar sides.
Orthohantaviruses are rodent-borne pathogens distributed all over the world, which do not cause visible disease in their reservoir host. Puumala orthohantavirus (PUUV) causes most human hantavirus disease cases in Europe and is transmitted by the bank vole (Clethrionomys glareolus). Hantaviruses have a tri-segmented genome consisting of the large (L) segment, coding for the RNA-dependent RNA polymerase (RdRP), the medium (M) segment, encoding the glycoproteins, and the small (S) segment. The S-segment contains two major overlapping open reading frames (ORF) coding for the nucleocapsid (N) protein and a non-structural (NSs) protein, a putative type I interferon (IFN-I) antagonist. To date, pathogenesis and reservoir host adaptation of hantaviruses are poorly understood due to missing adequate cell culture and animal models.
In contrast to previous studies, in this work, data from spring and summer 2019 indicated a high vole abundance, a high PUUV prevalence in voles and high human incidence for some endemic regions in Germany, but elsewhere values were low to moderate. Regional and local human health institutions need to be aware about the heterogeneous distribution of human PUUV infection risk.
For a better understanding of virus-host associations, two novel cell lines from bank voles and common voles each were generated and their susceptibility and replication capacities for a variety of zoonotic and non-zoonotic viruses were analyzed. The PUUV strain Vranica/Hällnäs showed efficient replication in a new bank vole kidney cell line, but not in four other cell lines of bank and common voles. Vice versa, Tula orthohantavirus (TULV) replicated in the kidney cell line of common voles, but was hampered in its replication in other cell lines. Several viruses, such as Cowpox virus, Vaccinia virus, Rift Valley fever virus, and Encephalomyocarditis virus 1 replicated in all four cell lines. West Nile virus, Usutu virus, Sindbis virus and Tick-borne encephalitis virus replicated only in a part of the cell lines. These results indicate a tissue or species specific tropism for many of the tested viruses and the potential value of vole cell lines to address such questions in detail.
Using one of these new cell lines, the first German PUUV strains were isolated from bank voles caught in the highly endemic region around Osnabrück. Complete genomes were determined by target-enrichment-mediated high-throughput sequencing from original lung tissue, after isolation and after additional passaging in VeroE6 cells and a bank vole-derived kidney cell line. Different single amino acid substitutions were observed in the RdRP of the two stable PUUV isolates. The PUUV strain isolated on VeroE6 cells showed a lower titer when propagated on bank vole cells compared to VeroE6 cells. Additionally, glycoprotein precursor (GPC)-derived virus-like particles of a German PUUV strain from the same region allowed the generation of monoclonal antibodies that reacted with the isolated PUUV strains.
To investigate the role of PUUV and other vole-borne hantavirus NSs proteins, the evolution of the NSs and N encoding sequences was investigated by a field study in bank voles and the NSs sequences were characterized in vitro for their inhibitory effect on the human interferon-β promoter. Analysis of blood and lung samples of 851 bank voles trapped during 2010-2014 in Baden-Wuerttemberg and North Rhine-Westphalia resulted in detection of 27.8% PUUV-specific antibody positive bank voles, whereas in 22.3% PUUV-specific RNA was detected. In the hantavirus outbreak years 2010 and 2012 PUUV prevalence in bank voles was higher compared to 2011, 2013 and 2014. Sequences of the S segment of all positive bank voles showed amino acid and nucleotide sequence types of the NSs-ORF with temporal and/or local variation, whereas the N-ORF was highly conserved. One sequence type persisted over the whole observation period in both regions. The NSs coding sequence was highly divergent among regional bank vole populations in the outbreak year 2012.
Transfection experiments resulted in the detection of different products of the NSs-ORF of PUUV, TULV, Prospect Hill and Khabarovsk orthohantaviruses, due to translation initiation at different methionine codons along the coding sequence. Using luciferase reporter assays, the NSs proteins of PUUV, TULV, Prospect Hill and Khabarovsk orthohantaviruses showed inhibition of IFN-I induction of up to 70%, whereas Sin Nombre and Andes orthohantavirus NSs proteins showed a reduced effect compared to the other NSs proteins. The first 20 amino acids of the N-terminal region of PUUV NSs were found to be crucial for IFN-I promoter inhibition.
In conclusion, the newly established cell lines, antibodies, reporter assays and PUUV isolates are highly valuable tools for future hantavirus research. The activity of PUUV NSs protein in human cells contributes to our understanding of virus-host interactions and highlights the importance of corresponding future reservoir host studies. Hantavirus surveillance studies showed the necessity for timely information of the potential human PUUV infection risk to public health institutions in endemic areas to initiate appropriate actions.
ABSTRACT
The Upper Pleistocene geoarchives in the south‐eastern Carpathian Basin are represented predominantly by loess–palaeosol records. In 2015, a 10 m sediment core composed of clay‐rich lacustrine sediments was recovered by vibracoring a dry lake basin located between the Vršac Mountains (Serbia) and the Banat Sands in the south‐eastern Carpathian Basin; a location relevant for placing regional archaeological results in a palaeoenvironmental context. Here, we present results from geoelectrical prospection and a lithostratigraphic interpretation of this sequence supported by a detailed granulometric study supplemented by ostracod analysis. An age model based on luminescence dating is discussed against sedimentological proxy data and its implication for palaeoenvironmental change. The cores show a stratigraphy of lighter ochre‐coloured and darker greyish sediment, related to the deposition of clay and silt trapped in an aquatic environment. Geophysical measurements show ~20 m thick lacustrine sediments. The grain‐size distributions including the variability in fine clay are indicative of a lacustrine environment. Fine particles were brought into the depositional environments by aquatic input and settled from suspension; also, direct dust input is constrained by grain‐size results. Riverine input and aeolian dust input interplayed at the locality.
Marine bacteria represent the most diverse organisms in the marine environment. The majority of these microbes is unknown and unculturable. Algae represent the main nutrient source for bacteria. Macro- and microalgae can consist to 70% of polysaccharides. The metabolic degradation of marine polysaccharides is underexplored and thus these mechanisms have to be investigated. These mechanisms are of high importance to generate defined oligosaccharides for the medical and pharmaceutical applications. The specific structure of marine poly- and oligosaccharides show antiviral activities, e.g. carrageenans from red algae are used for the inhibition of human papillomavirus. Another alginate derived marine polysaccharide show inhibition of the replication of the human immunodeficiency virus (HIV). The degradation mechanisms of marine CAZymes and the structure of marine polysaccharides should be further investigated for their high potential of antiviral activities and the creation of new marine drugs.
Many marine bacteria produce membrane extension like membrane vesicles or appendages but the function of these is poorly understood. In order to investigate their function, especially concerning polysaccharide utilization, proteomic analyses of subcellular compartments were performed. Microscopy analyses revealed that, beside MV, P. distincta forms different appendages, vesicle chains (VC) and thin filaments which were dedicated to extracellular polymeric substance. The formation of MV and VC was independent of growth phase or carbon source. The proteomic data showed that transporters end enzymes for the initial degradation of pectin and alginate were highly abundant in these membrane extensions and that there could be a kind of sorting for proteins in the membrane extensions. Additionally, two PUL encoded alkaline phosphatases and other phosphate acquiring enzymes were abundant in the MV and VC fractions. This indicates, that P. distincta constitutively produces enzymes for phosphate uptake, which would be necessary in the phosphate-limiting environment of the Southern Ocean. On the one hand marine bacteria produce membrane extensions in order to create a larger surface in the nutrient limiting marine environment for an increased chance to get in contact to nutrients and on the other hand the results indicate an accumulation of enzymes responsible for uptake and degradation of carbohydrates and phosphates in the MV and VC. Therefore, the membrane extensions act as nutrient traps and this might be beneficial for the bacteria in the diffuse aquatic environment.
The microbial community structure and the metabolism of bacteria in the Southern Ocean are very poorly investigated. The SO is a harsh environment for all organism but nevertheless, the SO is of high importance for the climate in the world due to the high carbon dioxide uptake. In this study water samples from two different sampling sites (S1 and S2) in the SO were investigated. With a metagenomic and metaproteomic approach the key players and the metabolic activity were analyzed. Additionally, the surface water was inoculated with pectin and incubated for several days in order to analyze polysaccharide utilization loci for pectin degradation and to isolate new pectin degraders. 16S-rDNA analyses revealed the bacterial community from the genomic data. Bacteria were separated in particle-associated and free-living bacteria. The overall particle associated bacterial community at both sampling sites was comparable, with Bacteroidetes and Gammaproteobacteria as the abundant phylum. Within the Gammaproteobacteria the Alteromonadaceae and Colwelliaceae were more abundant at S2 than at S1. The free-living bacteria at S1 were dominated by the Alphaproteobacteria, especially the SAR11 clade I. Metagenomic analyses showed that both sampling sites had comparable PUL composition, but taxonomical classification of PULs was differently. The metaproteome data revealed that PUL encoded enzymes were not highly abundant. Only few CAZymes were found, mostly TonB-dependent transporters belonged to the detected PUL proteins. Taxonomical classification of proteins showed differences between the sampling sites. At S2 the genus Colwellia and Arcobacter were highly increased compared to S1. At this location Candidatus Pelagibacter, Planktomarina and Polaribacter were the abundant taxa. The functional classification at both sampling sites was comparable. The only difference was the high abundance of Epsilonproteobacteria at S2 referable to the Arcobacter species. Nevertheless, the notably taxonomical differences could not be explained by the proteomic data and the functional classification, because no specific metabolic function could be highly addressed to these bacteria. These results assumed that different abundance of the key players could be explained by different environmental conditions. The pectin enriched cultured at both sampling sites were investigated for the functional potential of pectin degrading enzymes. No metaproteomic approach could be performed due to less sampling material. Only one PUL for the degradation of rhamnogalacturonan, a component of pectin, was found at S1. In contrast, bacteria grown on pectin could be isolated from these samples. Genome sequencing of five isolates showed that functional potential of pectin degradation is available. Due to the limitations of sequence alignments, it was not possible to detect a PUL responsible for pectin utilization in the metagenomic data. The results show that the polysaccharide degradation mechanism in the Southern Ocean has to be more investigated to get knowledge about the bacterial activity in the ocean’s surface and the carbon turnover in this underexplored environment.
We introduce PVSC-DTM (Parallel Vectorized Stencil Code for Dirac and Topological Materials), a library and code generator based on a domain-specific language tailored to implement the specific stencil-like algorithms that can describe Dirac and topological materials such as graphene and topological insulators in a matrix-free way. The generated hybrid-parallel (MPI+OpenMP) code is fully vectorized using Single Instruction Multiple Data (SIMD) extensions. It is significantly faster than matrix-based approaches on the node level and performs in accordance with the roofline model. We demonstrate the chip-level performance and distributed-memory scalability of basic building blocks such as sparse matrix-(multiple-) vector multiplication on modern multicore CPUs. As an application example, we use the PVSC-DTM scheme to (i) explore the scattering of a Dirac wave on an array of gate-defined quantum dots, to (ii) calculate a bunch of interior eigenvalues for strong topological insulators, and to (iii) discuss the photoemission spectra of a disordered Weyl semimetal.
More than half of the infectious diseases in humans are caused by zoonotic pathogens or pathogens of animal origin that were transmitted to humans a long time ago. Two important rodent-associated zoonotic pathogens are hantaviruses and human-pathogenic Leptospira spp. Both pathogens induce lifelong infection in the rodent hosts that shed the pathogen. Infection with these zoonotic pathogens in humans can cause clinical symptoms. Since some rodents, like the common vole (Microtus arvalis) and the bank vole (Clethrionomys glareolus syn. Myodes glareolus), have cyclic mass reproduction, this can result in years of population outbreaks in an increased number of disease cases in humans. This was found to be the case with the leptospirosis outbreaks in Germany and tularemia outbreaks in Spain, which were traced back to increased common vole density, as well as with the hantavirus disease outbreaks in several European countries, which were associated with bank vole population outbreaks.
The aim of this work was to define the distribution and prevalence of different hantaviruses and leptospires as well as their coinfection in different European rodents, with a focus on voles from the genus Microtus and the identification of factors that affect the pathogen prevalence in rodent hosts. Therefore, common voles, bank voles, striped field mice (Apodemus agrarius) and other rodents were screened by molecular methods for the presence and prevalence of Leptospira spp. and different hantaviruses. Additionally, in selected studies, the presence of anti-hantavirus antibodies was screened by enzyme-linked immunosorbent assay (ELISA) using recombinant hantavirus-nucleocapsid proteins. The prevalence of hantavirus, Leptospira spp. and double-infections with both pathogens was analyzed using individual and population-based factors. Small mammals from four different European countries, Spain in the West, Germany and Austria in Central and Lithuania in Northeastern Europe, were included in the studies.
With the molecular screenings, two new hantavirus strains were detected in continental Europe and were named Traemmersee hantavirus (TRAV) and Rusne hantavirus (RUSV) after the trapping locations in Germany and Lithuania, respectively. TRAV was detected in a field vole (Microtus agrestis) from the federal state of Brandenburg, Germany, while RUSV was detected in root voles (Microtus oeconomus) from Lithuania. Phylogenetic analysis of both hantaviruses indicates their close relation to Tatenale hantavirus and Kielder hantavirus, which were discovered in field voles in Great Britain. A pairwise evolutionary distance (PED) analysis showed that all four hantaviruses belong to the same hantavirus species, for which the putative name “Tatenale orthohantavirus” was proposed. Additionally, a recombinant RUSV antigen was generated and used successfully in ELISA for the detection of RUSV-specific antibodies and for the analysis of the cross-reactivity of monoclonal and polyclonal antibodies.
In Germany, Tula orthohantavirus (TULV) was foremost detected in common voles in Thuringia and Brandenburg but was also detected in field voles in Brandenburg. Puumala orthohantavirus (PUUV) was detected in Thuringia at the virus distribution border, but sequences differed strongly from known sequences from another neighboring trapping location. While in Austria Dobrava-Belgrade orthohantavirus (DOBV), genotype Kurkino, was detected for the first time in striped field mice, no hantavirus RNA was detected in common voles from Spain. The cause of this absence in the Iberian common vole population might be its long-term isolation from the common vole populations more to the east. The TULV prevalence in Germany in this study was dependent on the season and on the prior growth of the reservoir population. An individual factor that affected the hantavirus prevalence, was the increasing age of the common vole.
Leptospira spp.-DNA was detected in common voles from Spain and Germany, as well as in one striped field mouse from Austria. Except for the two detections of L. borgpetersenii in Spain, which were probably the result of spillover infections, only the genomospecies L. kirschneri was detected in common voles from Spain and Germany. The high prevalence of Leptospira spp., as well as the detection of only one genomospecies, confirm that L. kirschneri is the genomospecies for which the common vole is the main reservoir. Important factors for the Leptospira spp. prevalence were found to be, in addition to temperature and rainfall, the season and the preceding common vole density. Like the case with hantavirus, the age of the vole was found to be an influencing factor.
In Germany, coinfections of TULV and Leptospira spp. were detected. These were associated with high common vole density and increased with the age of the common vole. Furthermore, the incidence of coinfections seems to be impacted more by the Leptospira spp. than by the hantavirus prevalence.
As part of this thesis, TULV and PUUV were detected in previously untested regions in Germany, DOBV was detected for the first time in Austria and the distribution range of the putative species “Tatenale orthohantavirus” was extended to continental Europe for the first time with detection in two countries. Screenings in Spain indicate that certain common vole populations can be free from TULV infection. Furthermore, leptospires were detected in rodents from Spain, Germany and Austria. It was verified that certain Leptospira genomospecies are host-specific. Factors that influence the prevalence of infection or coinfection by hantaviruses and leptospires were determined.
The origin and hosts associated with the Tatenale orthohantavirus should be clarified in further studies including the field vole and the root vole as well as other members of the genus Microtus in Europe and Asia. The development of a RUSV-antigen-based ELISA will enable future screening in humans and therefore might provide information about the human pathogenicity of this pathogen. For final confirmation of the zoonotic potential, isolation of the virus and development of a focus reduction neutralization test are necessary. The expansion of the striped field mouse to Austria and the detectable carryover of DOBV associated with this implies that further screening studies to more precisely characterize the distribution of DOBV (and other pathogens) are needed. The studies of DOBV spread in Austria as well as PUUV spread in Germany could help to better understand the emergence of zoonotic pathogens in new regions. The here described hantavirus-Leptospira spp. and Neoehrlichia mikurensis-Bartonella spp. coinfections should be further analyzed to characterize the interactions of the pathogens in the context of a microbiome and their influence on epidemiological aspects of the involved pathogens. The here identified individual and population-based impact factors for the TULV and Leptospira spp. prevalence should support the development and optimization of prediction models.
Lyssaviruses, the causative agents of rabies, are a long-known threat for animals and humans. To date, terrestrial rabies still accounts for tens of thousands of human deaths annually, notwithstanding ambitious vaccination campaigns targeting susceptible dog and wildlife populations that act as reservoirs for the prototypic rabies virus. Moreover, the continuing discovery of newly emerging virus species in hitherto unconcerned chiropteran hosts and geographic regions drive the expansion of the Lyssavirus genus by unveiling its actual variety, host range and distribution.In this work, the genetic diversity of three distinct lyssaviruses, namely EBLV-1, KBLV and RABV, was elucidated by in-depth genomic analyses to provide further insight into lyssavirus evolution. The generation of full-genome sequences from primarily bat-associated Danish EBLV-1 samples significantly increased the number of available Danish EBLV-1 genome sequences while phylogenetic and phylogeographic analysis revealed a stronger phylogeographic structure for the cluster A1 of the sublineage EBLV-1a than it was postulated in previous studies. In addition, the acquisition of a nearly complete genome sequence for the Kotalahti bat lyssavirus provided the basis for the classification of this putative new lyssavirus species as a recognized member of the genus. Furthermore, phylogenetic analysis revealed the affiliation of KBLV to a group of Myotis-associated lyssaviruses giving a deeper insight into the shared evolutionary history of lyssaviruses co-evolving with particular bat species. Moreover, a deep-sequencing approach was utilized to assess the high genetic diversity of vaccine virus populations, uncovering three independent patterns of single nucleotide variants (SNVs) that became selected in ERA-related vaccine-induced cases. However, no apparent influence of the genetic diversity of vaccine viruses on microevolutionary processes like a potential reversion to virulence or a species-specific adaptation of the vaccine virus strains could be detected, leaving the question for the cause of rabies induction in the affected animals unanswered. Lastly, the successful implementation of a hybridization capturing system for the generation of full-genome sequences and deep-sequencing variant analyses of RABV and KBLV samples was demonstrated for a diagnostic bait set, highlighting the versatility and consistency of this approach to assess the genetic spectrum of known and novel lyssavirus species while setting the basis for its application and optimization in upcoming projects.In conclusion, as shown by the studies in this work, the investigation of lyssavirus genomes at the sub-consensus, full-genome and population level remains crucial to assess the complexity of lyssavirus evolution, as it provides an indispensable source of information to cover the diversity of the genus and understand evolutionary dynamics on a long-term and microevolutionary scale.
Background: COVID-19 lead to the adoption of containment measures including temporary closure of dental clinics. Despite the risk of infection transmission, dental emergencies have not ceased during this pandemic and had to be managed also in the lockdown period.
Aim: To analyze the profiles and offered management options of pediatric patients presenting with dental emergencies during a COVID-19 lockdown.
Design: Retrospective analysis of patient records of children seeking emergency dental treatment during a 7-week lockdown period in 2020 in a university pedodontics clinic in Germany, compared to a similar cohort from 2019. Data on patient level, tooth level, and session level were collected. An analysis of the digital records after 6 months follow-up was performed for the patients who received Non-Aerosol Generating Procedures (NAGP) as management for dental emergency in the lockdown period in 2020.
Results: The 2020 cohort consisted of 83 patients, while the 2019 cohort included 46 patients showing 45% higher necessity for emergency treatment in 2020. Most common chief complaint was oral mucosal conditions in 2020 (26.4%), and irreversible pulpitis in 2019 (25.5%). Dental caries (without spontaneous pain) was the second most chief complaint in both cohorts (20.7% and 23.4% respectively). Most interventions in 2020 were Minimally Invasive Treatments such as the hall technique and silver diammine fluoride (20.3%), which were in 2019 not considered, followed by pharmacological treatment (16.9%), which were in 2019 also highly used (35.9%). The 6 months follow up for the NAGP revealed benefit in management of the acute dental problem, by either direct treatment or by postponing the treatment need to a later time period.
Conclusion: The COVID-19 pandemic led to increase in emergency pediatric dental visits and shifted treatment options towards less invasive procedures.
In challenging situations, where aerosols increase the risk of infection transmission, NAPD are a viable option in the management of dental emergencies, especially in pediatric dentistry.
Frontotemporal lobar degeneration (FTLD) is likely to be the second-most common cause of dementia in individuals under 65 years of age. Pathognomonic changes in personality, behavior and motivation are known to lead to high caregiver stress and burden, with little support being available. The aim of this work is to present the current state of knowledge on the characteristics, challenges and unmet needs of caregivers as well as on possible interventions.
Two scoping reviews on caregiver burden using the PRISMA checklist for scoping reviews were conducted using PubMed, Web of Science and ScienceDirect in April 2017 and November 2019, respectively. A total of 107 articles were considered eligible and were analyzed qualitatively and summarized.
Our results show that caregivers of patients with FTLD are often female, spouses of the PwD, younger in age, have underage children and provide care at home. Behavioral and motivational disturbances in the PwD are perceived to be the most burdensome aspects of caregiving. Those caring for an individual with the bvFTD subtype thus report higher levels of burden than caregivers of an individual with a form of PPA. With rising dementia severity, caregivers report higher levels of burden. Many caregivers experience a decline in their own physical and mental health as well as a significant financial burden resulting from care duties. The deterioration of the relationship between the PwD and their caregivers is a main burdensome aspect. Only few interventions were conducted so far, and none of those that were identified were designed as an RCT. The most efficacious interventions were those aimed directly at caregivers, whereas interventions aiming at the amelioration of symptoms in the PwD showed little effect.
Further research should reproduce and validate efficacious interventions and establish new interventional approaches. Another focus should be set on the situation of underage children of individuals with FTLD and relatives of a person with hereditary FTD. More research from non-Western countries is needed in order to identify culture-specific factors of caregiver burden. Along those lines, support structures for FTLD caregivers should be assessed on a local basis and extended accordingly. So far, no study has assessed the relationship between caregiver burden and possible consequences for the quality of care provided to the PwD in FTLD specifically. Awareness both in the wider population and among healthcare professionals is an urgent need for the future since FTLD is often misdiagnosed, leading to a delay in obtaining the correct diagnosis and access to suitable support.
Climate change has strongly affected mountain forests through an increasing intensity and frequency of disturbances and forest dieback in recent decades. However, given the strong relevance of forest dieback and potential impacts on forest stakeholders and local inhabitants, it is surprising that this research field is seldom investigated to date. Therefore, this study deals with the perception of climate change-related consequences as well as possible silvicultural adaptation strategies for the Bavarian Forest. Since it can be assumed that various forest ecosystem services will be increasingly in demand in the future, participation by all stakeholders is essential. Therefore, a sequential, mixed-method approach (qualitative and quantitative survey) allows developing concrete guidelines and strategies for adaptive management, in which the diverse social demands on forests can be adequately taken into account.
To understand the resilience of African savannas to global change, quantitative information on the long-term dynamics of vegetation is required. Past dynamics can be reconstructed with the REVEALS model, which requires pollen productivity estimates (PPE) that are calibrated using surface pollen and vegetation data. Here we calculated PPE values for five savanna taxa using the extended R-value (ERV) model and two pollen dispersal options: the Gaussian plume model (GPM) and the Lagrangian stochastic model (LSM). The ERV calculations failed to produce a reliable PPE for Poaceae. We therefore used Combretaceae as the reference taxon – although values obtained with Poaceae as the reference taxon are presented in the supplement. Our results indicate that Combretaceae is the taxon with the highest pollen productivity and Grewia the taxon with the lowest productivity. Acacia and Dichrostachys are intermediate pollen producers. We find no clear indication of whether the GPM PPEs or the LSM PPEs are more realistic, but the differences between these values confirmed that the pollen fall speed has a greater effect in the modelling of GPM than in the LSM. We also applied REVEALS to the pollen record of Lake Otjikoto (northern Namibia) and obtained the first quantitative reconstruction of the last 130 years of vegetation history in the region. Cover estimates for Poaceae indicate the predominance of a semi-open landscape throughout the 20th century, while cover values below 50% since the 21st century correspond to a thick savanna. This change in grass cover is associated with the spread of Vachellia, Senegalia and Grewia reflecting an encroached state.
This work scrutinises the policy shift in Germany with the change in leitmotif from biotechnology to bioeconomy and examines the associated implications at various levels. The emergence and implementation of innovation policy funding programmes show that the policy transition did not follow a linear sequence. Neither excessive prioritisation nor neglect of a selected sector can be confirmed in this analysis. However, the policy shift from biotechnology to bioeconomy has not only consequences in terms of its content, but also affects the spatial distribution of R&D funding. Against the background of existing polarisation tendencies and the growing acknowledgement of inclusive innovation policy approaches, this study examines the importance the bioeconomy can assume in the reduction of regional disparities. In ‘organisationally thick’ regions, depending on the involvement of private actors, specialisation and regional branching can be observed. It is found that, for rural regions, the bioeconomy can be an appropriate tool for regional development, since other industries are often not present.
Viral diseases are a threat to bacteria and enormous animals alike. Vaccines are available against several viruses. However, for some viruses, like ASFV, we still lack vaccines, while for others, like IAV, they are not as effective as we need them to be. To a large extent, this is because we do not fully understand the mechanisms conferring antiviral immunity. To improve our understanding of antiviral immunity, we used a model species that is in many immunological aspects closer to humans than the widely used laboratory mice, pigs. In this thesis, pigs were investigated as a potential biomedical model species for viral respiratory infections in humans and as a natural host for viral infections. Both approaches provide valuable insights into aspects of porcine immunology that can either be used as the foundation for translational research or for the design of targeted therapeutics and vaccines for pigs.
Insights into fundamental characteristics of the porcine immune system form the basis for translational studies. Paper I pioneered a detailed characterization of porcine iNKT cells. To make pigs and porcine iNKT cells more available for scientific investigations, we established multicolor flow cytometry analysis platforms that allow for a more detailed investigation of these cells than previously possible. We found porcine iNKT cells circulating in peripheral blood to be a rare population among CD3+ lymphocytes that displays a pre-activated effector state and can be divided into at least three functional subsets. Upon antigenic activation, they proliferated rapidly, secreted pro-inflammatory cytokines, and exerted cytotoxicity. Moreover, we provided first evidence for a role of iNKT cells in porcine IAV and ASFV infections, which we investigated in more detail in paper IV. Central characteristics, i.e., phenotype and functional properties, exhibit a high degree of similarity between humans and pigs. Moreover, differences between human and murine iNKT cells are more pronounced than between humans and pigs.
Based on the results obtained in paper II, the established biomedical model could be used for further studies of infectious respiratory diseases. IAV infections pave the way for secondary co-infections with increased morbidity and lethality. These bactoviral co-infections are a threat to both pigs and humans. The shared susceptibility as well as homologies on the physiological and immunological level make pigs exceptionally suitable animal models for studies of these infections. Paper I and II can also be interpreted under translational aspects. Activation of iNKT cells in porcine vaccination studies showed promising results. Based on these and our findings, this might be a suitable approach for humans as well. Along with other studies, our results suggest that pigs might be a well-suited large animal model for research in infectious diseases. This is true especially for respiratory infections, such as seasonal IAV infections, for which pigs are natural hosts and contribute to viral spread and emergence as “mixing vessels”, which can result in pandemic strains like H1N1pdm09. We could show that porcine iNKT cells as well as the antiviral responses of cTC against H1N1pdm09 in pigs are comparable to human cells and processes. The increased implementation of pigs in basic and applied research might enable an improved translation of scientific knowledge to human and veterinary medicine.
In two further studies, papers III and IV, we investigated T-cell responses during a viral infection, ASF, for which pigs are the only natural hosts. Immune responses were similar after highly and moderately virulent ASFV infection in domestic pigs and wild boar, respectively. However, they differed between both species. Antiviral immunity in domestic pigs was predominantly exerted by αβ T cells, CD8α+ and DP αβ T cells, while the response in wild boar was dominated by γδ T cells, mainly CD8α+ effector cells. Since wild boar show a higher disease severity and lethality, even during infection with moderately virulent ASFV “Estonia2014”, a shift to γδ T cells seems to be detrimental. In contrast, domestic pigs survive infections with moderately virulent ASFV “Estonia2014”, which indicates that CD8α+ or DP αβ T cells confer protection at least in infections with non-highly virulent ASFV strains. Interestingly, in paper V we found higher and prolonged inflammation in domestic pigs, correlating with increased T-cell influx. However, histopathological analyses revealed no direct explanation for the differences in disease progression and lethality in domestic pigs and wild boar. These findings require further studies to elucidate the underlying mechanisms.
The lack of basic data about immunological differences between domestic pigs and wild boar hampers attempts to understand immunity against ASFV. We found differences between both suid subspecies already at steady state and even more prominent during ASFV infections in papers III-V. Most apparently, T-cell responses in wild boar were heavily biased towards γδ T cells, while immune responses in domestic pigs were based on αβ T cells. However, information about even basic characteristics, like the composition, phenotypes, and functional qualities of wild boar’s immune system, is missing. Therefore, essential baseline data must be obtained in order to adequately assess changes in future studies.
Analyses like these reveal major advantages of pigs as a biomedical model. On the one hand, similar to conventional model species, researchers can investigate every tissue at any desired time. Tissue from human patients is often scarce or not at all available, so models that can be investigated at specific times after infection are needed. On the other hand, results obtained in pigs are more comparable to humans than data from murine studies. Moreover, pigs are susceptible to similar pathogens as humans and experimental infections can be investigated without the need for major genetic manipulations. However, there are also limitations of the porcine model system. Analysis tools are not as advanced as they are for mice, especially in terms of availability of mAbs or genetically modified organisms. Still, given the major advantages that become more and more obvious, efforts should be made to make pigs more applicable for basic and translational research. In addition, findings derived from pigs can be used for the species itself. Pigs are a major livestock species and new treatments, or vaccines could also be used for them. Therefore, this research could eventually also improve animal welfare.
In summary, the presented thesis significantly enhanced our knowledge of porcine immune processes for cTC in general and iNKT cells in particular. Results were obtained both at steady state and in the context of IAV and ASFV infections, and thus, made pigs more available as a model for future research. The use of multicolor flow cytometry provided a broad overview of the ongoing immune reactions and enables further, more wide-ranging studies that can also address open questions in even more complex infection scenarios.