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Microbial infections can be either caused by a single species or complex multi-species consortia. One of the most prominent opportunistic human pathogens leading to mono- or mixed-species infections is the Gram-negative bacterium Pseudomonas aeruginosa. Understanding the molecular basis of its adaptation to infection-related stresses is an essential prerequisite for the prevention and treatment of P. aeruginosa infections. We therefore employed state-of-the-art proteomics approaches to elucidate the molecular adaptation mechanisms of P. aeruginosa to infection-related conditions. Moreover, structure, function and interaction of complex microbial consortia containing P. aeruginosa and causing catheter-associated urinary tract infections were investigated by metaproteomics analyses. Our investigations revealed that the adaptation of P. aeruginosa during infection is either based on gene expression changes caused by environmental signal integration or by gene mutations leading to a selective advantage in a particular host environment. In study I, investigating the proteome response of P. aeruginosa biofilms to the clinical relevant antibiotic ciprofloxacin, global changes in the protein profile were observed. Ciprofloxacin induced the expression of proteins involved in the Lex-induced SOS-response, drug efflux pumps and gene products of the ciprofloxacin-responsive prophage cluster and repressed the expression of porins and DNA-binding proteins. In study II the transcriptome and proteome of two clonal P. aeruginosa lineages during long-term colonization of cystic fibrosis (CF) patient’s lungs were analyzed. Point mutations in global regulator genes, i.e. retS, gacS, and gacA, were identified by genomic sequencing. Inactivation of RetS, found two years after the initial colonization, induced the expression of genes involved in chronic infections and coding for the type 6-secretion system (T6SS). Additional mutations in the GacS/GacA two-component regulatory system (TCS) were found to repress the expression of T6SS proteins and to induce the expression of proteins belonging to the type 3-secretion system (T3SS). In study III we elucidated the niche-specific adaptation of P. aeruginosa isolates from different infection sites by investigating their protein expression patterns and glucose metabolic fluxes. We could show that isolates from the urinary tract express a higher amount of proteins involved in the acquisition of micronutrients (i.e. iron) and carbohydrates compared to isolates from the CF lung. In study IV 16S rDNA sequencing and metaproteomics were employed to demonstrate that the investigated CAUTI-related biofilms consisted of two to five different species with one or two species dominating the mixed community. Following this line of research, we investigated in study V structure and function of a biofilm of a long-term catheterized patient, which was predominantly composed of P. aeruginosa and Morganella morganii, but also contained a minor proportion of the obligate anaerobe Bacteroides sp.. The comparison of in vivo and in vitro protein expression profiles of P. aeruginosa and M. morganii indicated that iron and carbohydrates are the major growth-limiting factors in the bladder. These results indicate different nutritional strategies of the two pathogens in the bladder environment. A comparison of urinary protein profiles of healthy persons and catheterized patients suggested that the human innate immune system is induced by CAUTIs. Moreover, numerous proteins involved in nutritional immunity, e.g. iron-, calcium- and magnesium-binding proteins, were found to be more abundant in the urine of catheterized patients. A follow-up (meta)proteomics study (study VI) aiming at the elucidation of interspecies interactions during multi-species infections indicated that the urease-positive uropathogen Proteus mirabilis induces the precipitation of metal ions by urine alkalization and thereby limits the availability of these important micronutrients for other co-infecting bacteria. This limitation seems to be sensed by the P. aeruginosa PhoP-PhoQ two-component system (TCS) leading to an increased resistance to antimicrobial peptides and biofilm-forming capacity of the pathogen. Also during co-cultivation of P. aeruginosa with Staphylococcus aureus a slight increase in the expression of the PhoP-PhoQ TCS and the alkaline protease could be observed (study VII). In study VIII a combined metagenomics and metaproteomics approach was employed to investigate structure and function of the lichen Lobaria pulmonaria, a complex consortium consisting of a fungus, an algal partner, cyanobacteria, and a highly diverse bacterial microbiome. The results presented in this work contribute to a better understanding of the manifold and complex bacterial adaptation mechanisms to infection-related and environmental stress and thereby foster the development of novel treatment and prevention strategies.
This thesis revolves around a new concept of independence of algebras. The independence nicely fits into the framework of universal products, which have been introduced to classify independence relations in quantum probability theory; the associated product is called (r,s)-product and depends on two complex parameters r and s. Based on this product, we develop a theory which works without using involutive algebras or states. The following aspects are considered: 1. Classification: Universal products are defined on the free product of algebras (the coproduct in the category of algebras) and model notions of independence in quantum probability theory. We distinguish universal products according to their behaviour on elements of length two, calling them (r,s)-universal products with complex parameters r and s respectively. In case r and s equal 1, Muraki was able to show that there exist exactly five universal products (Muraki’s five). For r equals s nonzero we get five one parameter families (q-Muraki’s five). We prove that in the case r not equal to s the (r,s)-product, a two parameter deformation of the Boolean product, is the only universal product satisfying our set of axioms. The corresponding independence is called (r,s)-independence. 2. Dual pairs and GNS construction: By use of the GNS construction, one can associate a product of representations with every positive universal product. Since the (r,s)-product does not preserve positivity, we need a substitute for the usual GNS construction for states on involutive algebras. In joint work with M. Gerhold, the product of representations associated with the (r,s)-product was determined, whereby we considered representations on dual pairs instead of Hilbert spaces. This product of representations is - as we could show - essentially different from the Boolean product. 3. Reduction and quantum Lévy processes: U. Franz introduced a category theoretical concept which allows a reduction of the Boolean, monotone and antimonotone independence to the tensor independence. This existing reduction could be modified in order to apply to the (r,s)-independence. Quantum Lévy processes with (r,s)-independent increments can, in analogy with the tensor case, be realized as solutions of quantum stochastic differential equations. To prove this theorem, the previously mentioned reduction principle in the sense of U. Franz and a generalization of M. Schürmann’s theory for symmetric Fock spaces over dual pairs are used. As the main result, we obtain the realization of every (r,s)-Lévy process as solution of a quantum stochastic differential equation. When one, more generally, defines Lévy processes in a categorial way using U. Franz’s definition of independence for tensor categories with inclusions, compatibility of the inclusions with the tensor category structure plays an important role. For this thesis such a compatibility condition was formulated and proved to be equivalent to the characterization proposed by M. Gerhold. 4. Limit distributions: We work with so-called dual semigroups in the sense of D. V. Voiculescu (comonoids in the tensor category of algebras with free product). The polynomial algebra with primitive comultiplication is an example for such a dual semigroup. We use a "weakened" reduction which we call reduction of convolution and which essentially consists of a cotensor functor constructed from the symmetric tensor algebra. It turns dual semigroups into commutative bialgebras and also translates the convolution exponentials. This method, which can be nicely described in the categorial language, allows us to formulate central limit theorems for the (r,s)-independence and to calculate the correponding limit distributions (convergence in moments). We calculate the moments appearing in the central limit theorem for the (r,s)-product: The even moments are homogeneous polynomials in r and s with the Eulerian numbers as coefficients; the odd moments vanish. The moment sequence that we get from the central limit theorem for an arbitrary universal product is the moment sequence of a probability measure on the real line if and only if r equals s greater or equal to 1. In this case we present an explicit formula for the probability measure.
Background: A telemedicine care concept based on telephone contacts and individualized text messages was developed for patients with mental disorders to continue treatment after therapy in a psychiatric day hospital. The primary objective of this study was to evaluate the effectiveness of the telemedicine interventions. Methods: The study had a 3-armed, randomized design with 2 intervention arms (intervention 1: telephone contacts; intervention 2: telephone contacts and short text messages; both took place over a period of 6 months and in addition to usual care), and a control group with usual care. Primary outcomes were 18-item Brief Symptom Inventory (BSI-18) scores for anxiety, depression and somatization. All participants were recruited from psychiatric day hospitals. The study was registered in the German Clinical Trials Register (DRKS00000662). Results: 113 participants were analyzed 6 months after starting the intervention. The average BSI-18 anxiety score after 6 months was -2.04 points lower in intervention group 2 than in the control group (p value: 0.042). The difference in BSI depression score between these two groups was marginally significant (p value: 0.1), with an average treatment effect of -1.73. In an exploratory sensitivity analysis restricted to the 75% of patients with the highest symptom scores at baseline, intervention group 1 yielded a significant effect for anxiety and depression compared to the control group (p = 0.036 and 0.046, respectively). Conclusions: Telemedicine provides a novel option in psychiatric ambulatory care with statistically significant effects on anxiety. A positive tendency was observed for depression, especially in cases with higher symptom load at baseline.
Liu–II coal pit is a typical example of China’s deep coal mines which is seriously threatened by groundwater inrush from the underlying carboniferous Taiyuan limestone formation. An exhaustive data set of this confined aquifer exists. The aquifer lies 45 m∼ 60 m below the major coal seam. A traditional artesian aquifer test has been performed in order to assess the hydraulic properties, e.g. transmissivity (T) and storage coefficient (S). This artesian aquifer test is conducted with four simultaneously operating production wells while the discharge of each production well varied with time. The results of this test suggest that the aquifer is heterogeneous. Therefore, the according problems are: (1) how to analyze the artesian aquifer test with linearly declining discharge; (2) how to deal with multiple production wells in an aquifer test; (3) how to adequately consider aquifer heterogeneity. Thus, the objective of this thesis is to solve these problems. 1) As opposed to classical above-ground pumping tests, it is difficult to control the discharge rate of the production well in a deep mine artesian aquifer test since the hydraulic pressure is extraordinary high. Moreover the discharge rate won’t descend rapidly to zero, thus the analytical solution of Jacob and Lohman (1952) type curve for the artesian aquifer test will not be applicable. It is more reasonable to analyze the test as a pumping test with variable discharge. It is considered to rebuild a hydrogeological conceptual model which is similar with Theis (1935) model but with the variable discharge. A general equation for any discharge variability is given. Its application for the linearly declining discharge is presented subsequently, and a type curve of this equation with linearly declining discharge is given as well. After that, a simple numerical model is built by FEFLOW to simulate an artificial pumping test with the linearly declining discharge by assigning different parameter sets for transmissivity and storage coefficient. The type curve method is applied to evaluate transmissivity and storage coefficient for the linearly declining discharge well. The deviation between the given values of transmissivity and storage coefficient in FEFLOW and the values of those calculated by matching point are sufficiently small. Thus, when the discharge of production well declines linearly, a type curve method as an empirical method is reasonable and gives satisfactory values of these hydrogeological parameters. 2) In some cases, it is necessary to conduct a pumping test (or an artesian aquifer test) with several pumping wells (or production wells) which work simultaneously in order to discharge maximum quantity of groundwater. Normally, the superposition method or numerical simulation is applied to analyze the test result. However, a new approach called “Well Generalization Method” is defined and analyzed in this thesis. It is an easy–to–use approach for hydrogeologist to estimate the aquifer parameters while conducting an aquifer test. Since the key point of this approach is using a generalization well to substitute the pumping (or production) wells, it is obvious that this approach will generate the estimated error of parameters. Accordingly, several scenarios are analyzed and discussed based on the artificial type aquifer designed in FEFLOW. A homogeneous aquifer and a heterogeneous aquifer which is generated by geostatistical stochastic simulation technique (see 3)) are discussed separately. As a result, this approach is feasible and applicable under some conditions when the calculated observation well is arranged more than about 2.5 times the scale of the multi–pumping–wells field away from the center of the multi–pumping–wells field, furthermore, the maximum deviation of drawdown resulting from these observation wells will be less than 0.5 m, and the estimated value of transmissivity will be 0.44% smaller than real value. 3) Finally aquifer heterogeneity is addressed, in order to check the introduced method for applicability under realistic conditions. It has been described that aquifer heterogeneity plays a major role in hydrodynamic processes (e.g. de Marsily et al., 1998). Geostatistics which is considered as a useful tool for characterizing the spatial variability of transmissivity is applied to solve this problem. Based on the results of the artesian aquifer test conducted in Liu–II coal pit, a model of spatial variability of transmissivity is developed. Sequentially, the variogram model is applied in ordinary kriging to interpolate the transmissivity distribution, and in sequential Gaussian simulation to simulate a random field of transmissivity data in order to reflect its small scale variability. A comparison of the results of estimation and simulation of transmissivity indicates that the simulated values better reflect the spatial variability, reversely, the estimated values are much smoother.
Background: Robotic-assisted laparoscopy (RAL) is being widely accepted in the field of urology as a replacement for conventional laparoscopy (CL). Nevertheless, the process of its integration in clinical routines has been rather spontaneous. Objective: To determine the prevalence of robotic systems (RS) in urological clinics in Germany, Austria and Switzerland, the acceptance of RAL among urologists as a replacement for CL and its current use for 25 different urological indications. Materials and Methods: To elucidate the practice patterns of RAL, a survey at hospitals in Germany, Austria and Switzerland was conducted. All surgically active urology departments in Germany (303), Austria (37) and Switzerland (84) received a questionnaire with questions related to the one-year period prior to the survey. Results: The response rate was 63%. Among the participants, 43% were universities, 45% were tertiary care centres, and 8% were secondary care hospitals. A total of 60 RS (Germany 35, Austria 8, Switzerland 17) were available, and the majority (68%) were operated under public ownership. The perception of RAL and the anticipated superiority of RAL significantly differed between robotic and non-robotic surgeons. For only two urologic indications were more than 50% of the procedures performed using RAL: pyeloplasty (58%) and transperitoneal radical prostatectomy (75%). On average, 35% of robotic surgeons and only 14% of non-robotic surgeons anticipated RAL superiority in some of the 25 indications. Conclusions: This survey provides a detailed insight into RAL implementation in Germany, Austria and Switzerland. RAL is currently limited to a few urological indications with a small number of high-volume robotic centres. These results might suggest that a saturation of clinics using RS has been achieved but that the existing robotic capacities are being utilized ineffectively. The possible reasons for this finding are discussed, and certain strategies to solve these problems are offered.
In this thesis an artificial enzyme cascade consisting of an ADH from Lactobacillus kefir, a CHMO from Acinetobacter sp. NCIMB 9871 and lipase A from Candida antarctica has been investigated for the biocatalytic synthesis of the bulk chemical ε-caprolactone as well as several derivatives for their direct utilization as polymer building blocks. Due to major limitations, which hamper such a biocatalytic route, the first addressed demand in this work was the improvement of the stability of the CHMO. By structure-guided engineering, distinctively improved variants concerning the resistance against oxidation as well as temperature stability without compromising the catalytic activity were successfully created. Due to the incomplete knowledge of the mechanisms that lead to thermal and/or oxidative inactivation of enzymes, this study illustrates that the selection of mutations for increased protein stability is still hard to predict. Thus, these results can serve as a basis for further stability studies on this enzyme class to give better insights into the underlying mechanisms, which determine the stability of an enzyme. Such a highly stabilized biocatalyst will pave the way for the successful use of flavin-dependent enzymes for industrial applications. A further aim of this thesis was dedicated to the second major hurdle en route to polyester precursors represented by the product inhibition and enzyme deactivation caused by ε-caprolactone, particularly at higher concentrations. To overcome this limitation, we developed an elegant solution in which the ε-caprolactone produced by the one-pot two-step enzymatic method is directly subjected to ring-opening polymerization using the unique lipase A from Candida antarctica. Applying this enzyme cascade in a whole cell biocatalysis in combination with an improved cofactor regeneration approach, the problem of product inhibition problem was efficiently solved leading to the formation of oligo-ε-caprolactone at more than 20 g/L when starting from 200 mM cyclohexanol. By a process development approach through solvent engineering it was found that biotransformations proceed much faster in an isooctane-containing biphasic solvent system when using free enzymes. Finally, the improved enzyme cascade was applied for the synthesis of chiral substrates and provided access to functionalized chiral compounds in high yields (up to >99%) and optical purities (up to >99%ee). By subsequent enzymatic enantioselective ring-opening of the enantiopure monomers, oligomeric lactones were successfully synthesized, which can be directly serve as building blocks for the polymer industry.
Synopsis
A network of ion sources is being developed on the 300-kV acceleration platform of the cryogenic storage ring (CSR) at the Max-Planck-Institut für Kernphysik. It consists of several types of sources like a metal ion sputtering source (MISS), a Penning source, a laser vaporization (LVAP) source, and an electrospray ionization (ESI) source to produce a large variety of ions which can be studied for photon and electron interaction in a ro-vibrationally cold environment. Furthermore a storage device such as a radiofrequency quadrupole (RFQ) is foreseen for internal state cooling and accumulation of rarely produced species.
The Institute of German Dentists [Institut der Deutschen Zahnärzte (IDZ)] conducted four national cross-sectional surveys of oral health in the German resident population [German Oral Health Studies, "Deutsche Mundgesundheitsstudien", (DMS)]: in 1989 (DMS I, only West Germany), 1992 (DMS II, only East Germany), 1997 (DMS III), and 2005 (DMS IV). In this study, the first two surveys (1989/92) were merged to achieve comparability with the last two studies. The Studies of Health in Pomerania (SHIP) are two independent regional cross-sectional population-based studies conducted during 1997-2001 (SHIP-0) and 2008-2012 (SHIP-Trend) in northeast Germany. In this thesis, we addressed three main questions: First, we aimed to explore the relative contributions of clinical oral health variables assessing caries, periodontal status, and prosthetic status to self-perceived oral health by means of an age-specific approach in DMS IV. Second, we aimed to assess the changes of dental health in West and East Germany between 1989 and 2005 in DMS I-IV. Third, we aimed to evaluate the changes of periodontal status and number of teeth within the last decade based on data from the DMS and the SHIP studies. To explore the associations of self-perceived oral health with clinical oral health variables, we developed separate multinomial logistic regression models for adults and seniors in DMS IV by using stepwise methods. To assess the changes of dental health in West and East Germany between 1989 and 2005, we applied regression models and assessed associations between region, survey year, their interactions and variables assessing dental disease status (number of missing, filled, decayed and sound teeth, the DMFT-index and the probability of having ≤20 teeth), adjusting for potential risk factors for caries. To assess changes of periodontal status in Germany, prevalences, percentages and numbers of teeth affected were defined. In summary, the number of unreplaced teeth showed the strongest association with self-perceived oral health in adults and was the second variable to enter the model for seniors during the stepwise selection process. Between 1997 and 2005, the number of missing teeth considerably decreased in DMS but East Germans had consistently more missing teeth than West Germans in each survey year. Further, during the last decade, the periodontal status significantly improved in SHIP and in West German adults, which might translate into a even higher tooth retention in the future.
This thesis investigates the biocatalytic synthesis of amines and amino alcohols. The applicability and economic feasibility of biocatalysis for chiral amine synthesis is reviewed and the findings were compared to established chemical processes using relevant process parameters (TON, TOF and STY). This review clearly showcases the potential of biocatalysis for the synthesis of chiral amines and provides a valuable guide for synthetic chemists who want to benefit from these new opportunities. Next, biocatalysis is applied for the synthesis of an amino alcohol with two stereocentres: A novel route for the synthesis of all four stereoisomers of 4-amino-1-phenylpentane-2-ol is presented. Enzymes were applied to install both stereocentres successively, which allowed the selective synthesis with high yields and optical purities. A small scale preparative asymmetric transamination yielded one amino alcohol stereoisomer selectively. The approach presented in this thesis provides a valuable option for the synthesis of this compound class as it is highly selective, step efficient and circumvents the need for protecting groups as well as transition-metal catalysis. The substrate scope of an (S)-selective amine transaminase (ATA) was altered in order to expand the applicability for amino alcohol synthesis. Protein engineering was conducted to enlarge the small binding pocket. Small scale preparative synthesis of the 1,2-amino alcohol (R)-phenylglycinol exemplifies the applicability of the evolved variants for the asymmetric synthesis of this compound. The designed variants expand the collection of ATAs that are suitable for the synthesis of amino alcohols with bulkier substituents. To deepen the understanding of ATAs further, a class III TA family wide analysis (which includes (S)-selective ATAs) is presented. After comparing the active site architectures and performing literature research amino acids were identified that correlate with the reaction- and substrate specificity of the enzymes within this family. This information is compiled in a sequence-function matrix, which allows the prediction of the main activity of biochemically uncharacterised enzymes from their sequence. These insights provide a better understanding of the activity determining residues in (S)-ATAs and class III TAs in general.
A slice is an intersection of a hyperplane and a self-similar set. The main purpose of this work is the mathematical description of slices. A suitable tool to describe slices are branching dynamical systems. Such systems are a generalisation of ordinary discrete dynamical systems for multivalued maps. Simple examples are systems arising from Bernoulli convolutions and beta-representations. The connection between orbits of branching dynamical systems and slices is demsonstrated and conditions are derived under which the geometry of a slice can be computed. A number of interesting 2-d and 3-d slices through 3-d and 4-d fractals is discussed.
Cervical Artery Dissection in Young Adults in the Stroke in Young Fabry Patients (sifap1) Study
(2015)
Background: Patients with carotid artery dissection (CAD) have been reported to have different vascular risk factor profiles and clinical outcomes to those with vertebral artery dissection (VAD). However, there are limited data from recent, large international studies comparing risk factors and clinical features in patients with cervical artery dissection (CeAD) with other TIA or ischemic stroke (IS) patients of similar age and sex. Methods: We analysed demographic, clinical and risk factor profiles in TIA and IS patients ≤55 years of age with and without CeAD in the large European, multi-centre, Stroke In young FAbry Patients 1 (sifap1) study. Patients were further categorised according to age (younger: 18-44 years; middle-aged: 45-55 years), sex, and site of dissection. Results: Data on the presence of dissection were available in 4,208 TIA and IS patients of whom 439 (10.4%) had CeAD: 196 (50.1%) had CAD, 195 (49.9%) had VAD, and 48 had multiple artery dissections or no information regarding the dissected artery. The prevalence of CAD was higher in women than in men (5.9 vs. 3.8%, p < 0.01), whereas the prevalence of VAD was similar in women and men (4.6 vs. 4.7%, n.s.). Patients with VAD were younger than patients with CAD (median = 41 years (IQR = 35-47 years) versus median = 45 years (IQR = 39-49 years); p < 0.01). At stroke onset, about twice as many patients with either CAD (54.0 vs. 23.1%, p < 0.001) or VAD (63.4 vs. 36.6%, p < 0.001) had headache than patients without CeAD and stroke in the anterior or posterior circulation, respectively. Compared to patients without CeAD, hypertension, concomitant cardiovascular diseases and a patent foramen ovale were significantly less prevalent in both CAD and VAD patients, whereas tobacco smoking, physical inactivity, obesity and a family history of cerebrovascular diseases were found less frequently in CAD patients, but not in VAD patients. A history of migraine was observed at a similar frequency in patients with CAD (31%), VAD (27.8%) and in those without CeAD (25.8%). Conclusions: We identified clinical features and risk factor profiles that are specific to young patients with CeAD, and to subgroups with either CAD or VAD compared to patients without CeAD. Therefore, our data support the concept that certain vascular risk factors differentially affect the risk of CAD and VAD.
This thesis investigated dielectric barrier discharges (DBDs) in N2-O2 gas mixtures at atmospheric pressure, with a focus on the gas discharge physics. The main goal was to evaluate whether possible control mechanisms exist that can manipulate the breakdown and the development of DBDs, especially for pulsed operation. To examine the pre-breakdown phase, the actual breakdown and the main DBD development, DBDs in a double-sided, single filament arrangement with a 1 mm discharge gap were investigated by means of electrical and optical diagnostics with high resolutions. Spectrally- and temporally-resolved iCCD pictures (2D in space), spectrally- and spatio-temporally-resolved streak camera and CCS images (1D in space) were simultaneously recorded accompanied by a full electrical characterisation with fast voltage and current probes. Sinusoidal- and pulsed-driven DBDs were found to have a qualitatively similar spatio-temporal development, i.e. a cathode-directed ionisation front (v ~ 10^6 m/s, positive streamer mechanism), followed by a transient glow-like phase in the gap. For sinusoidal operation, the slope of the applied voltage is flat (dU/dt ~ 1 V/ns) compared to pulsed operation (dU/dt ~ 100 V/ns). Thus, during the longer pre-phase of the sine-driven DBD, many more charge carriers were generated, in contrast to the pulsed-driven DBDs, where the pre-phase is limited by the short voltage rise time. Consequently, just before the breakdown occurs, the charge carrier density is higher for sine-driven DBDs, i.e. the positive streamer starts in a highly pre-ionised environment, which leads to a lower propagation velocity. In addition to limiting the pre-phase (lower pre-ionisation), the steep voltage slope of the pulsed DBD amplifies the streamer breakdown because the applied voltage rises significantly during its propagation. Therefore, the transferred electrical charge and the electrical power of a single DBD can be controlled by the applied voltage amplitude, but only in pulsed operation. In addition to the effects of different voltage slope steepness, the pulse width is an excellent parameter in the pulsed operation to set the pre-ionisation, by shifting the DBDs into the after-glow of the previous discharge using asymmetrical HV pulse waveforms. The subsequent DBDs ignite in different pre-ionised conditions, defined by the residual charge carrier densities in the gap that originated from the previous DBD. The breakdown characteristics of these DBDs could be controlled down to the fundamental level. This thesis has described for the first time four different breakdown regimes in single filament DBDs for 0.1 vol% N2 in O2 and connected them to the processes during their pre-phases. The “classic” DBD development (a cathode-directed streamer followed by a transient glow discharge) could be controlled in a certain range, followed by a transition first to a breakdown regime featuring a simultaneous propagation of a cathode- and an anode-directed streamer, and finally to a reignition of the previous DBDs without any propagation, just by reducing the pulse width (time between two subsequent DBDs), i.e. increasing the pre-ionisation level. All differences between the DBDs at rising and falling slopes could be explained by the different pre-conditions in the gap. The O2 concentration in the N2-O2 gas mixtures offers another way of controlling the pre-ionisation. Due to the electron attachment as a consequence of the electronegativity of oxygen, the electron density decreases for higher O2 admixtures. Furthermore, the differences in the first Townsend ionisation coefficient and in the photo-ionisation between N2 and O2 influence the DBD behaviour as well. To some extent, some of the reported effects achieved by varying the pulse width at a fixed O2/N2 ratio were also observed for a fixed pulse width and changing O2 concentration. Hence, the response of the DBD properties to changing pre-ionisation levels seems to be a general principle of DBD control. Additional effects of the O2/N2 ratio, such as an increasing DBD inception jitter or higher streamer velocities, were also reported. Finally, a reverse of the effects induced by the O2 admixture such as DBD emission duration or DBD inception delay, was observed for O2 concentrations below 0.01 vol%, and were especially pronounced at a pressure of 0.5 bar. For 0.1 vol% O2 in N2, a minimal electron recombination rate was found, which can be explained by the different decay and recombination rates of positive nitrogen and oxygen ions. These different rates effect the charge carrier dynamics and consequently, the pre-ionisation in the gap. In conclusion, this investigation has highlighted the importance of volume memory processes on the breakdown and development of single filament DBDs at elevated pressures.
Children as young as 3 years can remember an object’s location within an arrangement and can retrieve it from a novel viewpoint (Nardini et al., 2006). However, this ability is impaired if the arrangement is rotated to compensate for the novel viewpoint, or, if the arrangement is rotated and children stand still. There are two dominant explanations for this phenomenon: self-motion induces an automatic spatial updating process which is beneficial if children move around the arrangement, but misleading if the children’s movement is matched by the arrangement and not activated if children stand still and only the arrangement is moved (see spatial updating; Simons and Wang, 1998). Another explanation concerns reference frames: spatial representations might depend on peripheral spatial relations concerning the surrounding room instead on proximal relations within the arrangement, even if these proximal relations are sufficient or more informative. To evaluate these possibilities, we rotated children (N = 120) aged between 3 and 6 years with an occluded arrangement. When the arrangement was in misalignment to the surrounding room, 3- and 4-year-olds’ spatial memory was impaired and 5-year-olds’ was lightly impaired suggesting that they relied on peripheral references of the surrounding room for retrieval. In contrast, 6-years-olds’ spatial representation seemed robust against misalignment indicating a successful integration of spatial representations.
Chronic Obstructive Pulmonary Disease and Diabetes Mellitus: A Systematic Review of the Literature
(2015)
The objective of this systematic review was to discuss our current understanding of the complex relationship between chronic obstructive pulmonary disease (COPD) and type-2 diabetes mellitus (T2DM). We performed a systematic search of the literature related to both COPD and diabetes using PubMed. Relevant data connecting both diseases were compiled and discussed. Recent evidence suggests that diabetes can worsen the progression and prognosis of COPD; this may result from the direct effects of hyperglycemia on lung physiology, inflammation or susceptibility to bacterial infection. Conversely, it has also been suggested that COPD increases the risk of developing T2DM as a consequence of inflammatory processes and/or therapeutic side effects related to the use of high-dose corticosteroids. In conclusion, although there is evidence to support a connection between COPD and diabetes, additional research is needed to better understand these relationships and their possible implications.
Clinically Relevant Depressive Symptoms in Young Stroke Patients - Results of the sifap1 Study
(2015)
Background: Although post-stroke depression is widely recognized, less is known about depressive symptoms in the acute stage of stroke and especially in young stroke patients. We thus investigated depressive symptoms and their determinants in such a cohort. Methods: The Stroke in Young Fabry Patients study (sifap1) prospectively recruited a large multinational European cohort (n = 5,023) of patients with a cerebrovascular event aged 18-55. For assessing clinically relevant depressive symptoms (CRDS, defined by a BDI-score ≥18) the self-reporting Beck Depression Inventory (BDI) was obtained on inclusion in the study. Associations with baseline parameters, stroke severity (National Institutes of Health Stroke Scale, NIHSS), and brain MRI findings were analyzed. Results: From the 2007 patients with BDI documentation, 202 (10.1%) had CRDS. CRDS were observed more frequently in women (12.6 vs. 8.2% in men, p < 0.001). Patients with CRDS more often had arterial hypertension, diabetes mellitus, and hyperlipidemia than patients without CRDS (hypertension: 58.0 vs. 47.1%, p = 0.017; diabetes mellitus: 17.9 vs. 8.9%, p < 0.001; hyperlipidemia: 40.5 vs. 32.3%, p = 0.012). In the subgroup of patients with ischemic stroke or TIA (n = 1,832) no significant associations between CRDS and cerebral MRI findings such as the presence of acute infarcts (68.1 vs. 65.8%, p = 0.666), old infarctions (63.4 vs. 62.1%, p = 0.725) or white matter hyper-intensities (51.6 vs. 53.7%, p = 0.520) were found. Conclusion: Depressive symptoms were present in 10.1% of young stroke patients in the acute phase, and were related to risk factors but not to imaging findings.
Synopsis
By interaction with electrons in ion storage devices (ion-cyclotron-resonance and radio-frequency traps) negatively charged clusters of gold and aluminum have been produced up to the 6th and 10th charge state, respectively. The production of these poly-anions opens exciting new possibilities to measure their lifetimes, to monitor their relaxation schemes after laser radiation, as well as to probe their Coulomb barriers.
Staphylococcus aureus can be a harmless colonizer of the human body, which colonizes about 20-30% of the population. If S. aureus overcomes the outer physical barrier of the body, comprised of the skin and mucous surfaces, it can also cause severe diseases such as endocarditis, pneumonia, or sepsis. S. aureus possesses a variety of secreted and surface bound virulence factors to mediate attachment and invasion into the host, to disseminate an infection and to modulate and evade the immune system. But not only the huge amount of virulence factors turn S. aureus into a dangerous human pathogen, also its resistances to a broad spectrum of commonly used antibiotics make infections hard to treat. During the last years it became apparent that S. aureus can be internalized by as well as replicate and persist in professional and non-professional phagocytic cells. It is suggested that the intracellular compartment protects S. aureus from antibiotic treatment and the immune system. To accomplish the adaptation to the intracellular compartment, S. aureus needs to regulate its gene expression by regulatory systems. One of these regulators is the alternative sigma factor SigB, which directly and indirectly regulates the expression of about 200 genes in vitro. However, the stimuli leading to the activation of SigB in S. aureus are barely known and also its role during an infection varies, depending on the S. aureus strain and infection model used. Therefore, the importance of SigB during the early adaption of S. aureus to the intracellular environment should be elucidated using a cell culture infection model. First, the existing cell culture infection workflow had to be modified to improve the data analysis and to increase the yield of identified proteins to comparatively monitor the adaption reaction of S. aureus HG001 and its isogenic ΔsigB mutant to the intracellular milieu of S9 human bronchial epithelial cells. The proteome analysis in conjunction with RT-qPCR analysis of the wild type and the ΔsigB mutant revealed a fast and transient activation of SigB directly after internalization. Quantitative analysis of the intracellular bacterial titer demonstrated a requirement of SigB for intracellular replication. Differences in the proteome composition of the ΔsigB mutant in comparison to the wild type after internalization reflected the different growth rates, resistance to antibiotics and toxic compounds, adaptation to oxidative stress, and protein quality control mechanisms. The accessory gene regulator (Agr) is like SigB also a global regulator of gene expression in S. aureus. To elucidate possible benefits in the intracellular survival of the co-occurrence of S. aureus wild type and Δagr mutant cells, like it can be found in sites of an infection, a co-infection assay was established. With the co-infection assay the simultaneous and competitive intracellular survival in comparison to the individual intracellular survival was followed for three days post-infection (p.i.). The single and the co-infection revealed that the wild type was able to replicate more efficiently during the first hours p.i. than the Δagr mutant, but the mutant was able to survive more efficiently. The extracellular proteome of S. aureus represents the key compartment for virulence factors. Virulence factors are secreted or bound to the surface of the S. aureus cell. With the infection workflow applied in this study, secreted proteins are lost during the enrichment of the intracellular bacteria for proteome analysis. Therefore, no information about the levels or the regulation of virulence factor expression can be acquired in the cell culture infection model using cell sorting approaches. Hence, the extracellular proteome of S. aureus was analyzed in vitro from shake flask experiments. To get a comprehensive overview of the regulatory impact of different global regulators onto the secretome, S. aureus LS1 mutants lacking the global regulators Agr, SarA and SigB were compared to the respective wild type. Additionally the protein level of the secretome of the well characterized and frequently used S. aureus strains 6850, CowanI, HG001, LS1, SH1000, and USA300 was comparatively analyzed. This project was performed in collaboration with the group of Prof. Löffler from the Institute of Medical Microbiology in Jena. The data of the extracellular proteome generated in this thesis were combined with phenotypic and toxicity data to explain strain differences in invasiveness, cytotoxicity, phagosomal escape, and intracellular persistence in infection experiments.
We presented the prevalence of MIH in Dubai/UAE for the first time, which represents a developed Middle Eastern city and compared it to results obtained from Greifswald/Germany, which represents a developed European city. The results have shown that the prevalence of MIH in Dubai/UAE is higher than Greifswald/Germany. However, in comparison to the literature, the prevalence of MIH in Dubai is lower than other Middle Eastern cities. Furthermore, we have shown that there is a higher caries level associated with MIH in Dubai. This is also true in Greifswald, Germany and other international studies. In addition, we have reported the prevalence of caries and fluorosis in Dubai and compared them to Greifswald and the previous studies in Dubai. Nevertheless, caries values presented in this study and previous studies indicate that strong attention is required from health authority to this topic. This research provides a strong and comparable source of information on the prevalence of MIH in Dubai for other studies, since it followed strictly all methodological and clinical standards suggested for the assessment and diagnosis of MIH, which are the EAPD criteria. The findings presented in this study require particular attention from the local health authorities and general practitioners for such developmental defect to facilitate early and adequate diagnosis and treatment. This could be achieved by implementing continuing education courses on MIH detection, diagnosis, and treatment for general practitioners. Furthermore, this study has the potential to trigger new studies that would help in understanding the MIH etiology.
This thesis delves into some very important scientific challenges for the stellarator concept as a whole and W7-X in particular, namely, how one effectively interfaces the hot plasma with the material walls of the experiment, in special how the plasma heat and particle fluxes are controlled. The fundamental concept that will be used in W7-X for particle and heat exhaust is the island divertor. A number of theoretical and numerical studies have been performed to guide the design of the divertor components. The actual divertor components are in series production at this time, and are largely compatible with the expected heat loads. However, with the sophisticated codes now available, it has become clear that there are some, otherwise very attractive, operational scenarios that could lead to overloading of the W7-X divertors. At least one mitigation strategy was proposed but was until now not analyzed in sufficient detail. In this thesis, state-of-the-art codes are used to analyze this previously proposed mitigation strategy; they are also used to develop several alternative mitigation schemes, which may in the end be advantageous. The work performed here shows not only that it is conceivable to solve this already identified problem in new and arguably better ways but also that the W7-X coil set has enough degrees of freedom that many important long-pulse plasma effects can be effectively mimicked in short-pulse operation. This opens up a rich research program in the early phases of operation and may therefore lead to a significant acceleration of the scientific program to control and optimize the divertor operation in W7-X. The main scientific challenge for the island divertor operation in W7-X is that, since the divertor geometry is now fixed, the magnetic field structure must be adjusted to the divertor geometry, or additional plasma-facing components must be manufactured and installed. Well before this thesis work was done, such additional plasma-facing components were proposed. These are called scraper elements (SEs). As a part of this work, computer simu- lations were performed in order to obtain a better knowledge base regarding the SEs. To analyze the effect of the SE, edge plasma physics simulation code EMC3-Eirene, was used, in combination with state-of-the-art magneto hydrodynamic (MHD) equilibrium codes. This combination was computationally non-trivial and new, and it has led to important insights. One main result of this study is that the SEs significantly reduce the particle exhaust capabilities in steady state operation; this is a concern for W7-X. To test and further quantify this deleterious effect, physics experiments with a prototype SE should be performed as soon as possible, ideally in the first operation campaigns before the approximately two-year break needed to complete W7-X for steady-state operation. In 3 this first operation phase, however, the necessary combination of plasma parameters, heating power, and achievable pulse length is not accessible. This means, on the one hand, that the problem described will not be present in the first operation phase; on the other hand, the physics implications of installing an SE would appear not to be experimentally testable in that phase. One major finding of this thesis is that the coil system of W7-X is flexible enough to allow such an early experimental test. Different stages of high performance long-pulse discharge can be effectively mimicked in the experiment by a targeted use of the available coil sets. Thus, even in the early phases of the W7-X program one can assess both the protection capabilities of the SEs and their effects on particle exhaust and plasma performance in general. These mimic scenarios also have the potential to test other possibilities for divertor pro- tection besides the SE. Such strategies are addressed in this thesis. The two most promising strategies identified here can be classified as plasma shift and iota control. Both adjust the edge magnetic field to better fit the divertor geometry. This is done slowly but dynamically — i.e. during a long plasma discharge.