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The main objective of this work is to contribute to the understanding of the grafting of nitrogen and amino surface functional groups on polymers by means of plasmas containing nitrogen and hydrogen. For this purpose, many aspects of plasma surface modification were studied. In the frame of this work, a new, UHV-sealed plasma reactor system was put into operation. The system is special for its clean reaction environment and the possibility to perform quasi in situ XPS measurements. A comparison of the UHV system to a fine vacuum reactor showed that a clean reaction environment is mandatory for reproducible plasma processing and efficient nitrogen and amino functionalisation. A key motivation for the present work was the observation that the non-coating plasma processes reported in literature fail to graft primary amino groups on polymer surfaces with densities that significantly exceed 3 - 4% NH2/C. In order to investigate this phenomenon in detail, this work followed two experimental tracks: On the one hand, a broad systematic study of plasma processing parameters was performed. On the other, the surface diagnostics methods used for the quantification of amino groups were critically reviewed. For this, a numerical algorithm was developed to reconstruct the element depth profile from angle-resolved XPS data. In the scope of the process parameter study, cw and pulsed microwave (MW) plasma excitation was compared to radio-frequency (RF) excitation. The home-built MW source was studied and optimised with respect to ignition behaviour and power efficiency. The performance of the MW and RF plasmas in polymer surface modifications was studied in various gas mixtures containing NH3 and H,, or N2 and H,. Also the differences of glow and afterglow processing of polymers were investigated. Large variations of the nitrogen and primary amino grafting efficiencies were obtained. They triggered a number of new ideas for the underlying reaction mechanisms. Special attendance was devoted to the selectivity of the functionalisation processes for primary amino groups. Nitrogen-containing discharges that were rich in hydrogen achieved selectivities up to 100%. The upper limit of 3 - 4% amino groups on the surface, however, was not passed. Angle-resolved XPS measurements revealed a systematic problem for the definition of a surface density, which is capable of explaining the upper limit for amino groups. It is either due to a limited labelling depth of amino groups by the applied TFBA derivatisation reaction, or to a limited functionalisation depth of the plasma process. One very efficient nitrogen-grafting plasma process that was developed on polystyrene was applied to seven other unfluorinated polymers. The similarity of the resulting functionalisation demonstrated a good transfer-ability of plasma surface functionalisation processes. Plasma treatments of polymer surfaces, especially in hydrogen-containing gases, are known to be generally followed by uncontrollable oxidation phenomena. The properties of plasma-functionalised polymer surfaces were therefore studied in conjunction with ageing effects. Quasi in situ XPS analysis allowed to distinguish the influence of oxygen contamination during the plasma process from post-process oxidation due to contact of plasma-treated samples to atmospheric oxygen. The surface modification experiments were accompanied by several gas phase diagnostic techniques. In the scope of this work, the UHV reactor system was equipped with optical emission spectroscopy (OES), two-photon absorption laser-induced fluorescence (TALIF), and tunable diode laser absorption spectroscopy (TDLAS). A separate plasma source was setup to perform an absolute quantification of the vacuum-ultra-violet (VUV) emission intensity of hydrogen-containing MW-excited plasmas. The techniques were evaluated with respect to their contribution to an understanding of the plasma processing of polymers. The rich experimental data allowed to suggest new reaction mechanisms for the grafting of nitrogen- and amino functional groups. Surface passivation experiments in H, plasmas of nitrogen-functionalised surfaces initiated a re-evaluation and an extension of the mechanism of selective etching [1]. Together with two other new reaction mechanisms, a hypothetical reaction scheme was suggested. It was studied by the help of two numerical models for heterogenous reactions of radicals with the surface. In order to avoid the complexity of the fragmentation process of NH,, the models were restricted to discharges in N, and H9. Despite the sparse information on the composition of the gas phase, the data of two experimental series showed a very particular phenomenology that allowed a first test of the model. The test supports the newly-suggested reaction mechanisms. Especially the role of NH2 attachment to open reaction sites for the grafting of amino groups was emphasised. A more stringent test of the model is left to future experiments with extended gas phase diagnostic means.
We improved our previous model of tracheal tube preparation and examined the effects of oral treatment of rats with carbocisteine (CCS) and its interaction with bronchial epithelium. The model permitted isometric or isotonic measurements of smooth muscle contraction or relaxation in cannulated or tracheal ring preparations, with or without epithelium. We found that oral treatment with carbocisteine and not preincubation of preparations in vitro, diminished sensitivity of preparations without epithelium to carbachol (EC50, -log(M) values: IN -luminary perfusion, -EP, controls vs. CCS: 5.8±0.06 vs. 5.5±0.09, p<0.005; OUT - serosal perfusion, -EP, controls vs. CCS: 5.9±0.06 vs. 5.6±0.05, p<0.005), while the sensitivity to aminophylline, degree of shortening, and the velocity of contraction of rat tracheal rings stimulated by 10-6M carbachol was not affected. Normal sensitivity to carbachol stimulation was re-established if preparations were preincubated with capsaicin. We conclude that carbocisteine has small inhibitory effects on the sensitivity to carbachol of the rat tracheal smooth muscle denuded of epithelium. Described model is valuable for examining the effects of bronchial epithelium on bronchial smooth muscle contraction.
In the thesis the reason for the low breeding success of white rhinos in captivity was investigated and solutions suggested. It was also investigated how to improve management of free ranging populations. It was establish whether female white rhinoceros choose their mates and, if so, which factors influence their choice. The study also seeks to establish whether there is any relationship between androgens, environmental factors and mating activity. The study was carried between March 1997 and May 1999 on a private game farm in South Africa. The study animals enjoyed conditions similar to those enjoyed by free-ranging populations. A non-invasive endocrine monitoring technique was developed to assess the androgen concentrations in faeces of male white rhinos. The body and horn size of adult males was measured, the concentration of testosterone in their faeces determined, and the characteristics of their territories investigated. All of these factors were then set in relation to their reproductive success. The reproductive success was established by genetic analysis of fatherhood using AFLP methods. The quality of male territories was described by vegetation structure, tree and grass species composition, the availability of frequently foraged or selected grass species as well as the nutritional composition of the forage. In addition, the influence of seasonal rainfall, presence of receptive females and territorial activity on androgen metabolite concentrations was established.
The present experimental work investigates plasma turbulence in the edge region of magnetized high-temperature plasmas. A main topic is the turbulent dynamics parallel to the magnetic field, where hitherto only a small data basis existed, especially for very long scale lengths in the order of ten of meters. A second point of special interest is the coupling of the dynamics parallel and perpendicular to the magnetic field. This anisotropic turbulent dynamics is investigated by two different approaches. Firstly, spatially and temporally high-resolution measurements of fluctuating plasma parameters are investigated by means of two-point correlation analysis. Secondly, the propagation of signals externally imposed into the turbulent plasma background is studied. For both approaches, Langmuir probe arrays were utilized for diagnostic purposes. The main findings can be summarized as follows: Greatly elongated fluctuation structures exist in plasma edge turbulence. The structures are aligned along the confining magnetic field (k|| = 0). The correlation degree of fluctuations for a short connection length of 0.75m is greater than 80%. For much longer connection lengths of 23m and 66m, the correlation degree is reduced to approximately 40%. A conceptual interpretation of these observations is the coexistence of two different fluctuation components. One component has a correlation length parallel to the magnetic field below 20m and the other component a correlation length greater than 70m. Sine signals in the frequency range 1-100 kHz were injected into the turbulent plasma background. The propagation parallel and perpendicular to the magnetic field of the signals was studied. In poloidal direction, an asymmetry is observed, that can be explained by a copropagation of the signal with the background E × B-rotation of the plasma. The signal propagation parallel to the magnetic field shows no such asymmetry. As an advanced approach, spatio-temporal wave patters were injected into the edge plasma. The waves launched that way can be seen as test waves' in a turbulent background. The coupling strength of the imposed wave patterns to the background turbulence relies on the match of the imposed waves to the dynamics of turbulent structures. If the propagation direction of the imposed waves is parallel to the propagation direction of the background plasma, improved coupling is observed. This finding underlines the importance of the background plasma rotation for future attempts of controlling the plasma edge turbulence. Further optimization of frequency and wave vector of the imposed waves is probably a promising approach for achieving a significant and systematic influence of turbulence. Taking into account the present experimental state-of-the-art, for a deeper insight into the mechanism of the plasma edge turbulence of magnetized high-temperature plasmas a joint effort of numerical modeling and experimental results is a valuable approach. Such a cooperation should cover the explanation of the correlation observations as well as the experiments on signal injection into background turbulence. A quantitative comparison between the results presented in this work and a dedicated numerical drift wave simulation would be a significant step forward to a better understanding of plasma edge turbulence.
The role of large-scale fluctuation structures in electrostatic
drift-wave-type plasma turbulence is highlighted. In particular,
well-defined laboratory experiments allow one to study the
dynamics of drift wave mode structures as well as `eddies' in
drift wave turbulence. In the present paper we discuss the
mutual relationships between observations made in linear
magnetic geometry, purely toroidal geometry and magnetic
confinement. The simplest structure, a saturated, nonlinear
drift mode, is the starting point for a Ruelle-Takens-Newhouse
transition route to chaos and weakly developed turbulence. Both
spectral and phase space analysis are applied to characterize in
detail the transition scenario, which is enforced due to an
increased drive by the plasma equilibrium state. In addition to
direct multi-probe observation, statistical approaches are most
revealing for the systematic study of the spatiotemporal
dynamics in fully developed drift wave turbulence. In
particular, the propagation of large-scale `eddy' structures is
traced by conditional statistics methods. Finally, the control
of drift wave turbulence by spatiotemporal synchronization is
discussed.
Until today most social, historical and cultural studies of the American postwar era have contributed to the myth of a relatively homogeneous society and culture. Even though they understood these years as a turning point for modern American society, they failed to encompass the polyvalence and heterogeneity of American society. Focussing mostly on white and middle class males, these studies formed a onedimensional picture of sociocultural conformity, a picture in which issues of gender, race and class were largely absent. Crossing the boundaries of feminist, cultural and historical studies this dissertation starts from identifying the gaps and problems in current academic research. Those sociopolitical structures that affected non-white women are then juxtaposed with the dominant postwar discourse of womanhood. The literary texts by women of color show them grappling with the conflicting demands of socioecnomic realities and pervasive role definitions. On the surface these literary interventions seemed to submit to dominant ideologies while opposing them at the same time. Thus they are both anticipatory and antagonistic. The dissent and criticism in writings by women of color seem to have become a catalyst for the deep social transformations in the following decades.
Studies of stroke in experimental animals have demonstrated the neuroprotective efficacy of a variety of interventions; however, most such strategies have failed to show clinical benefits in aged humans. One possible explanation for this discrepancy between animal and clinical studies may be the role that age plays in the recovery of the brain following insult. For example, the poor functional recovery of aged rats after stroke may be caused by a decline in brain plasticity. Although the incidence of ischemic stroke increases dramatically with advancing age, relatively few studies have been conducted on aged animals, which would mimic most closely the context in which stroke occurs in humans. We have shown that, at one week following stroke, there was vigorous expression of MAP1B and its mRNA, as well as MAP2 protein, in the border zone adjacent to the infarct of 3 month- and 20 month-old male Sprague Dawley rats. Hypothesis: The decline in brain plasticity is caused by an age-related decline in the upregulation of factors promoting brain plasticity (MAP1B, ßAPP) and an age-related increase in astroglial scaring and in the expression of neurotoxins such as beta amyloid. Methods: Focal cerebral ischemia was produced by reversible occlusion of the right middle cerebral artery in 3- and 20-month-old male Sprague Dawley rats. The functional outcome was assessed in neurobehavioral tests at 3, 7, 14, and 28 days post-stroke. At these time points, brains were removed and analyzed for markers of (i) brain plasticity (microtubule-associated protein 1B, MAP1B, secreted forms of fi-amyloid precursor protein); (ii) neurogenesis (BrdU-positive cells, doublecortin, nestin); (iii) neurotoxicity (B-amyloid aggregates); (iv) inflammation (microglia, astrocytes, oligodendrocytes, endothelial cells). Results: (1) There was a non-significant tendency for blood pressure to be higher in old than in young rats. By post-stroke day 3 the infarct volume covered about 15% of the cortical neurons in young and 28% in aged rats. By day 7, infarct volumes were roughly equal in the two age groups. (2) Cell counting showed increases in the number of BrdU-positive cells in the infarcted area of old rats at day 3 post-stroke. This increase became even more dramatic at day 7 post-stroke in aged rats. There was no significant contribution of apoptosis to cell death. (3) Behaviorally, young rats recovered gradually and reached a maximum of 90% of baseline performance at day 14, post-stroke while the aged rats recovered only to a maximum of 70% of pre-surgery performance by week 2 post-stroke, and remained at that level. (4) The temporal pattern of recovery correlated well with the expression of growth-associated phenotype of ßAPP as well as with MAP1B accumulation in varicosities along axons (an indicator of growth) in cortical areas affected by stroke and was at maximum between days 14 to 28 in young rats. In contrast, aged rats showed delayed (day 28) and reduced axonal remodelling as well as a delayed (day 28) expression of growth-associated ßAPP. Instead, the neurotoxic carboxy-terminal form of ßAPP steadily accumulated over time and reached a maximum at day 14 in aged rats as compared to 28d for the young rats. Nestin, a marker for immature neurons, overlapped with BrdU-labelled cells at day 7 post-stroke in corpus callosum and at the infarct border in both young and aged rats, suggesting increased stroke-induced neurogenesis. (5) In young rats there was a gradual activation of both microglia and astrocytes that peaked by days 14 to 28 with the formation of a glial scar. In contrast, aged rats showed an accelerated astrocytic and microglial reaction that peaked in week 1 post-stroke. We also noted a strong activation of oligodendrocytes at early stages of infarct development in all rats that persisted in aged rats. Evolution of astrocytic and microglial reactivity closely paralled the time course of scar formation in both young and aged rats and coincided with the stagnation in the recovery rate of aged rats. Conclusions: The time course of functional recovery in young rats correlated well with the expression of plasticity proteins such as MAP1B and ßAPP while an early and persistent expression of the neuro toxic fragment AB in conjunction with a delayed expression of MAP1B and ßAPP may impede functional recovery in aged rats. The results also suggest that a temporally anomalous glial reaction to cerebral ischemia in aged rats leads to the premature formation of scar tissue that impedes functional recovery to stroke.
Serbian Tertiary ultrapotassic province is part of widespread but not voluminous basaltic magmatism in Serbia. Two principal groups of ultrapotassic rocks are recognized; the lamproite affinity group (LAG) and the kamafugite affinity group (KAG). My results demonstrate three dominant low-pressure evolutional processes: magma mixing and fractional crystallization, analcimization and heteromorphism. The two suites of ultrapotassic rocks show large ranges of Sr and Nd isotopic values but a restricted variation of Pb isotopes. LAG is characterized by wide ranges of Sr and Nd isotopes (87Sr/86Sri 0.70735- 0.71299, 143Nd/144Ndi 0.51251-0.51216). KAG is isotopically homogeneous with a limited range of Sr-Nd isotopes (87Sr/86Sri 0.70599-0.70674, 143Nd/144Ndi 0.51263-0.51256). The Pb isotope compositions of both groups are similar (206Pb/204Pb 18.581-18.832, 207Pb/204Pb 15.624-15.696 and 208Pb/204Pb 38.744-38.987), and fall within the pelagic sediment field resembling Mesozoic flysch sediments from the Vardar ophiolitic composite suture zone. Highly variable Sr and Nd isotopic signatures of primitive-LAG rocks correlate with REE fractionation and enrichment of the HFSE. I explain this correlation using vein+wall-rock melting model, invoking the presence of different metasomatic domains (veins with phlogopite, Cpx and F-apatite) that are out of isotopic equilibrium with the peridotite wall rock. Relatively uniform Sr and Nd isotopic data of KAG rocks, similar trace element patterns and small but regular variations of HFSE ratios, indicate different degrees of melting of a relatively homogeneously metasomatized mantle source. Geochemical modelling implies the role of phlogopite, apatite and Ti-oxide in their mantle source.
Challenge of immunized mice with H. pylori induces protective gastric inflammation that is histologically indistinguishable from chronic H. pylori-associated gastritis in non-immune mice. To identify mechanisms of protective immunity gene expression in the gastric tissue from infected mice and mice vaccinated prior to challenge was compared by DNA array analysis. Message RNA was used to screen over 10,000 murine genes. Major Histocompatibility Complex antigens and IFN-γ dependent GTP binding proteins were strongly upregulated in both infected and immunized/challenged mice compared to naive controls. Differences in gene expression were also observed in novel T cell genes, which were exclusively upregulated in immunized/challenged mice. Both IFN I and II associated genes like the IFN-a/ßreceptor or IFN dependent transcription factors mIRF-1 and ISGF3 were also predominantly expressed in this group. These results were confirmed for several candidate genes by semi-quantitative RT-PCR. Additionally, H. pylori-stimulation of CD4+ T cells from immune mice induced significantly more IFN-γ production than stimulation of cells from infected mice. The present study provides evidence that the inflammatory infiltrate that arises in the gastric mucosa when immunized mice are challenged with H. pylori is associated with specific T cells sets and protein families that are distinct from those present in Helicobacter-associated chronic inflammation. Gene array profiles and in vitro assays indicate that immunized mice are more readily poised than infected mice to promote IFN-γ production and IFN related events and thus promote a strong proinflammatory THi response. This study supports recent findings that an immune response dominated by THi cytokines is essential for protection from H. pylori infection. This insight could facilitate the choice of the appropriate adjuvants for the development of vaccines against H. pylori, which are efficient and safe for use in humans. The mechanisms by which THi cells induce protective immunity or reduce Helicobacter colonization remain poorly understood and will be subject of future research.
Within the scope of this work, a versatile large linear magnetised plasma experiment was designed, constructed, and subsequently put into operation. The magnetised plasma was used to investigate the dispersion of whistler waves (circular polarised electromagnetic waves) with regard to the influence of the plasma boundaries. After a brief review over electromagnetic plasma waves and the three discharge modes of a helicon source, the experimental device and the diagnostic tools are explained in detail. Great attention is devoted to the identification of a reliable, calibrated magnetic fluctuation probe design. To the understanding of dynamical phenomena in ionospheric plasmas, whistler wave measurements in laboratory experiments may contribute significantly because of the ability to vary plasma parameters and to do measurements with high spatial and temporal resolution. However, the boundaries of laboratory experiments change the dispersion behaviour of whistler waves significantly if compared to the unbounded ionospheric situation. The influence of the plasma boundary is studied in the present work on three different levels of increasing complexity. First, a high density, small wavelength regime is established to make the effect of the boundary negligible. Measurements are in full agreement with whistler wave theory for unbounded plasma geometry. Measurements below the ion cyclotron frequency reveal the strong influence of the ion dynamics on whistler wave propagation, but are not straightforward to interpret in terms of dispersion theory. Second, the other limit case is examined: bounded plasma helicon modes. These waves are, mathematically speaking, eigenfunctions of the plasma-boundary system and are of great practical importance for high density plasma discharges, the helicon source. Careful measurements of the equilibrium plasma parameters as well as the magnetic fluctuation profiles of the helicon source are done in all three modes of operation, the capacitive, inductive, and helicon wave sustained mode. The first two modes are fairly well understood and the measurements are consistent with existing models. The high density helicon mode, however, is still a scientific case. The measurements partially confirm existing assumptions. It is demonstrated that the plasma production is detached from the antenna edge region. Moreover, it is shown that the plasma parameters are self-consistently determined by the antenna geometry and the discharge parameters according to basic helicon wave theory. Finally, it is ruled out that the plasma density is the control parameter determining the transition point into the high density helicon mode. The measurements rather suggest that the rf power density is the important value. As a third aspect, whistler waves in an intermediate wavelength regime are studied and the transition from unbounded to bounded plasma wave dispersion is systematically investigated. It is shown both experimentally and numerically that the wave dispersion in a plasma filled metal waveguide cannot be determined solely from wave vector measurements parallel to the magnetic field. For a correct description, the perpendicular mode profile has to be correctly taken into account. In contrast to simple helicon wave theory, it is demonstrated that the perpendicular mode profile is not only determined by the conducting vessel boundaries alone but the entire plasma-boundary system has to be considered as a unity. To summarise, this work has contributed to a better understanding of the physics of the propagation of whistler waves, where the particular role of metal boundaries acting as wave guides was highlighted. This basic science approach to the waves' dynamics is believed to be of significance in the course of the scientific debate on the physics principles of helicon discharges.
Two main aspects concerning drift wave dynamics in linear, magnetized plasma devices are addressed in the work: In part I of the thesis, drift waves are studied in a helicon plasma. The plasma parameter regime is characterized by comparably high collision frequencies and comparably high plasma-p exceeding the electron-ion mass ratio. Single Langmuir probes and a poloidal probe array are used for spatiotemporal studies of drift waves as well as for characterization of background plasma parameters. The main goals are the identification of a low-frequency instability and its major destabilization mechanisms. All experimentally observed features of the instability were found to be consistent with drift waves. A new code, based on a non-local cylindrical linear model for the drift wave dispersion, was used to gain more insight into the dominating destabilzation mechanisms, and also into dependencies of mode frequencies and growth rates on different parameters. In the experiment and in the numerical model, poloidal mode structures were found to be sheared. Part II of the thesis reports about mode-selective spatiotemporal synchronization of drift wave dynamics in a low-P plasma. Active control of the fluctuations is achieved by driving a preselected drift mode to the expense of other modes and broadband turbulence. It is demonstrated that only if a resonance between the driver signal and the drift waves in both space and time is reached, the driver has a strong influence on the drift wave dynamics. The synchronization effect is qualitatively well reproduced in a numerical simulation based on a Hasegawa-Wakatani model.
Low-pressure plasmas offer a unique possibility of confinement, control and
fine tailoring of particle properties. Hence, dusty plasmas have grown
into a vast field and new applications of plasma-processed dust particles
are emerging. There is demand for particles with special properties and
for particle-seeded composite materials. For example, the stability of
luminophore particles could be improved by coating with protective Al2O3
films which are deposited by a PECVD process using a metal-organic precursor gas.
Alternatively, the interaction between plasma and injected micro-disperse powder
particles can also be used as a diagnostic tool for the study of plasma surface
processes. Two examples will be provided: the interaction of micro-sized (SiO2)
grains confined in a radiofrequency plasma with an external ion beam as well as
the effect of a dc-magnetron discharge on confined particles during deposition
have been investigated.
Severe trauma results in alterations in immune functions, correlated with a dysbalanced cytokine synthesis. This imbalance endangers severely injured patients for post-traumatic complications such as MODS, liver failure, renal dysfunction and ARDS. IL-10, a powerful immunosuppressive cytokine, plays a central role in the immune response after severe trauma. The relevance of IL-10 for single and multiple organ failure was studied in a prospective study at a level I trauma center. Blood was systematically obtained from a total of 118 severely injured [median (IQR) ISS=34 (27-34)] patients. IL-10 plasma levels were measured by ELISA. Patients showed elevated IL-10 levels throughout the whole observation period of 5 days. IL-10 plasma levels rose rapidly after trauma and gradually declined towards day 5. Patients who developed complications demonstrated significantly elevated IL-10 levels compared with patients who did not. The odds of developing MODS were 9.6 times greater in patients with IL-10 plasma levels higher than 124 pg/mL 6 hours after arrival at the ICU. Multivariate analysis showed that IL-10 plasma levels >124 pg/mL at time-point 6h, severe head injury and an arterial pH <7.34 were simultaneously significant predictors of the development of MODS in severely injured patients. The dynamic with rapid increase and gradual decline in IL-10 plasma levels indicated that IL-10 is a marker of the initial damage to the organism caused by trauma, rather than a marker of somatic dysregulations.
The present work consists of four parts, containing experimental data obtained from analysis of 'Bacillus subtilis' specific and general defense strategies against reactive oxygen species. In the first part, the peroxide and superoxide stress stimulons ob 'B. subtilis' were analyzed by means of transcriptomics and proteomics. Oxidative stress responsive genes were classified into two groups: the gene expression pattern was either similar after both stresses or the genes primarily responded to one stimulus. The high induction observed for members of the PerR-regulon after both stimuli supported the assumption that activation of the peroxide specific PerR-regulon represented the primary stress response after superoxide and peroxide stress. The second part focuses on protein carbonylation in 'B. subtilis' wild-type and 'sigB' mutant cells. The introduction of carbonyl groups into amino acid side chains of proteins represents one possible form of protein modification after attack by reactive oxygen species. Carbonyl groups are readily detectable and the observed amounts can thus serve as an indicator for the severity of protein damage. The resultsdemonstrate clearly that 'B. subtilis' proteins are susceptible to hydrogen peroxide (H2O2) mediated carbonylation damage. The application of low concentrations of H2O2 prior to the exposure to otherwise lethal levels of peroxide reduced markedly the degree of protein carbonylation, which also held true for glucose starved cells. Artificial preloading with general stress proteins resulted in a lower level of protein carbonylation when cells were subjected to oxidative stress, but no differences were detected between wild-type and 'sigB' mutant cells. In the third part, strains with mutations in genes encoding general stress proteins were screenedfor decreased resistance after H2O2 challenge. It was demonstrated that resistance to H2O2 challenge. It was demonstrated that resistance to H2O2 after transient heat treatment, likewise to conditions of glucose starvation, was at least partly mediated by the sB-dependent general stress response. The screening of mutants in sB-controlled genes revealed an important role for the deoxyribonucleic acid (DNA)-binding protein Dps in the context of sB-mediated resistance to oxidative stress underlining previous reports. Therefore, the experimental strategy opens a global view on the importance of DNA integrity in 'B. subtilis' under conditions of oxidative stress. The fourth part includes analysis of a 'B. subtilis' thioredoxin conditional mutant. The thiol-disulfide oxidoreductase TrxA is an essential protein in 'B. subtilis' that is suggested to be involved in maintaining the cytoplasmic thiol-disulfide state even under conditions of oxidative stress. To investigate the physiological role of TrxA, growth experiments and two-dimensional gel electrophoresis were carried out with exponentially growing cells that were depleted of TrxA. The observations indicate that TrxA essentially involved in the re-reduction of phosphoadenosyl phosphosulfate reductase CysH within the sulfate assimilation pathway of 'B. subtilis'.
The insulin dependent type 1 diabetes mellitus (IDDM) and the metabolic syndrome are complex human diseases. Both diseases are heterogeneous, genetically inherited and do not follow a simple Mendelian single-locus pattern. The analysis of complex human diseases is complicated both by genetic heterogeneity and by environmental factors. One way to overcome the problem of genetic heterogeneity in humans may be to cluster patients by kinship. It was shown by analysis of maternal lines of type 1 diabetics using mitochondrial DNA that 89% of maternal lines are related to each other. Moreover, an alternative to the genetic differential analysis of complex mammalian diseases is the use of animal models. The availability of inbred animal models closely resembling the human disease is an essential component of genetic investigations in this field, as shown in the results of this work. These findings do not only underscore the utility of the congenic and subcongenic approach in differentially analyzing complex traits, but also show that candidate genes can be identified and that chromosomal exchange can variously influence the phenotype, leading to sub-phenotypes which may be representative for human beings. Furthermore, it will also be possible to locate the syntenic region in the human genome and congenic and subcongenic strains can also be used to study interactions between chromosomal regions and various selected environmental conditions. In this way, it may be possible to learn which region can be influenced by environmental factors and to which extent, an undertaking which will require prospective projects.
Colossal magneto-resistance manganites are characterized by a complex interplay of charge, spin, orbital and lattice degrees of freedom. Formulating microscopic models for these compounds aims at meeting two conflicting objectives: sufficient simplification without excessive restrictions on the phase space. We give a detailed introduction to the electronic structure of manganites and derive a microscopic model for their low-energy physics. Focusing on short-range electron–lattice and spin–orbital correlations we supplement the modelling with numerical simulations.
This work studies different alternatives for parallelization of ground-state DMRG, with a focus on shared memory multiprocessor systems. Exploiting the parallelism in the dominant part of a DMRG calculation (diagonalization of the superblock Hamiltonian), speedups of 5 to 6 on 8-CPU machines can be achieved. A performance analysis gives hints as to which machine is best siuted for the task. The parallelized DMRG code is then applied to current problems in theoretical solid state physics with electronics, bosonic and spin degrees of freedom. Stripe-like modulations of the hole density in the ground state of doped Hubbard with cylindrical boundary conditions are idenficied in the thermodynamic limit using extrapolation techniques. In the 1D Holstein model of spinless fermions at half filling, Luttinger parameters and the charge structure factor are determinde in order to derive the phase diagram that had previously been established only on small lattices. For the 1D half-filled Holstein-Hubbard model, a finite size analysisof spine and charge excitation gaps in the relevant sectors (Mott insulator, Peierls band insulator and bipolaronic Peierls insulator) is able to yield the phase diagram as well. Finally, is the Heisenberg spin chain with dynamical phonons is considered as a relevant model for a spin-Peierls transition in Copper Germanate. Using DMRG, the relation between singlet-triplet excitation gap and dynamical dimeriaztion is calculated for the first time.
The present work is a paleolimnological orientated approach to refine and improve the indicator ability of freshwater ostracods from Holocene and Late glacial deposits in northeast Germany. The thesis follows two different approaches, one utilizes quantitative paleoenvironmental analysis, while the other evaluates ecological investigations of living specimens to extend the potential indicator group. For the first time quantitative ostracod analysis are carried out for a lacustrine basin (lake Krakower See) and a near-shore locality (Pudagla lowland) in the study area. The ecological investigation of living ostracods comprises 96 localities. The evaluation focused on environmental variables, which explain significantly the species composition. A canonical correspondence analysis identified at least four environmental parameters - water temperature, conductivity, pH-value, and mean water depth – which have an effect on ostracod assemblages. An extended analysis, which included only a subset of lake sites, revealed also that the former three environmental parameters affect the ostracod lake fauna, whereas the water temperature is the dominant factor. A temperature-transfer function could be regressed and calculated from the given trainingset by a weighted average model. These estimates can now be use in future paleolimnological investigations in northeast Germany to quantify the paleotemperature.
First-principle path integral Monte Carlo simulations were performed in order to analyze correlation effects in complex electron-hole plasmas, particularly with regard to the appearance of excitonic bound states. Results are discussed in relation to exciton formation in unconventional semiconductors with large electron hole mass asymmetry.
Collisional absorption of dense fully ionized plasmas in strong high-frequency laser fields is investigated in the non-relativistic case. Quantum statistical methods are used as well as molecular dynamics simulations. In the quantum statistical expressions for the electrical current density and the electron-ion collision frequency–valid for arbitrary field strength–strong correlations are taken into account. In addition, molecular dynamic simulations were performed to calculate the heating of dense plasmas in laser fields. Comparisons with the analytic results for different plasma parameters are given. Isothermal plasmas as well as two-temperature plasmas are considered.
We investigate the equilibration of nonideal plasmas from initial states where each species has already established a Maxwellian distribution, but the species temperatures and the chemical composition are not in equilibrium. On the basis of quantum kinetic equations, we derive hydrodynamic balance equations for the species densities and temperatures. The coupled density-temperature relaxation is then given in terms of the energy transfer between the subsystems and the population kinetics. We use the Landau-Spitzer approach for the energy transfer rates and a system of rate equations to describe the nonequilibrium plasma composition. Nonideality corrections are included in the rate coefficients and as potential energy contributions in the temperature equations on the simplest level of a Debye shift.
The relaxation of nonideal two-temperature plasmas is investigated with a kinetic approach. First the energy transfer between the electrons and ions is described using different approximations: the energy transfer through classical collisions (Landau-Spitzer approach) is reviewed; quantum diffraction and strong collisions are included by applying the quantum Boltzmann equation; the influence of collective modes is considered on the basis of the Lenard-Balescu equation (coupled modes) and with the Fermi-Golden-Rule approach (independent electron and ion modes). Finally, the evolution of the species temperature is investigated. In nonideal plasmas, changes in the correlation energy have to be taken into account during the relaxation. It is demonstrated that ionic correlations can significantly influence the relaxation particularly the evolution of the ion temperature).
A highly stereoselective recombinant alcohol dehydrogenase aus 'Pseudomonas fluorescens' DSM50106
(2005)
The alcohol dehydrogenase was biochemically characterized. A broad range of arylaliphatic ketones is efficiently reduced to the corresponding optically active (R)-alcohols by a recombinant alcohol dehydrogenase (PF-ADH) produced by overexpression in 'Escherichia coli'. PF-ADH shows high activity and stereoselectivity in the reduction of acetophenone and various derivatives (45-99%), as well as in the reduction of 3-oxy-butyric acid methyl ester and 3-oxy-butyric acid methyl ester and 3-oxy-hexanoic acid ethyl ester (>99%). The highest activity was observed between 10 and 20°C. The copfactor NADH can be efficiently recycled by the addition of 10-20% of iso-propanol. A flow-through-polarimetry-based assay to determine oxidoreductase activity and stereoselectivity is described.
The triple-trap mass spectrometer ISOLTRAP at ISOLDE/CERN has demonstrated the feasibility of mass spectrometry of in-trap-decay product ions. This novel technique gives access to radionuclides, which are not produced directly at ISOL-type radioactive ion beam facilities. As a proof of principle, the in-trap decay of 37K+ has been investigated in a Penning trap filled with helium buffer gas. The half-life of the mother nuclide was confirmed and the recoiling 37Ar+ daughter ion was contained within the trap. The ions of either the mother or the daughter nuclide were transferred to a precision Penning trap, where their mass was determined.
About 30 % of epileptic patients are non-responsive to multidrug antiepileptic therapy. One of non-responsiveness in epilepsy hypothesis claims that non-responsiveness occurs because of reduced access of antiepileptic drugs to their targets, as a result of increased efflux of antiepileptic drugs away from these targets. Transporters believed to be involved in non-responsiveness in epilepsy are mainly but not exclusively the members of the ABC superfamily including P-gp (MDR1, ABCB1), MRP1 (ABCC1), MRP2 (ABCC2) and others. These proteins are normally found in the blood-brain barrier and the blood-cerebrospinal fluid barrier where they function as protectors. There is emerging evidence that P-gp, MRP1 and MRP2 are up-regulated in epileptogenic brain tissue. The risk of non-responsiveness could be related also to the MDR1 or MRP2 gene polymorphisms. We hypothesised that changes in expression and function of multidrug transporters involved in non-responsiveness of epilepsy might be detectable not only in the brain but also in other tissues such as lymphocytes. Therefore we evaluated the expression of MDR1, MRP1 and MRP2 and function of P-gp in lymphocytes in patients with epilepsy and healthy subjects. Three groups of epileptic patients and 15 healthy subjects as a control group were included in the study. The patients’ group was defined as follows: Monotherapy – patients treated with carbamazepine monotherapy, without seizures - corresponded to group responders. Combined therapy – patients after monotherapy (two different medicines have been tried) and combined therapy (two trials of combined therapy), not free of seizures. Monotherapy and combined therapy groups each embraced 15 patients. Neurosurgery – patients who had undergone neurosurgery, afterwards were or were not additionally treated with carbamazepine, with or without seizures. This group comprised 24 patients. Combined therapy and neurosurgery groups composed the group of non-responders. The mRNA expression of MRP1, MRP2 and MDR1 by means of quantitative real-time PCR as well as MRP2 and P-gp protein content by Western blot in lymphocytes was measured. For P-gp functional analysis rhodamine efflux from lymphocytes and natural killer (NK) cells was performed. The influence of the polymorphisms C3435T, G2677T/A in the MDR1 gene and C24T, G1249A, C3972T in the MRP2 gene for the transporters expression, function and their association with non-responsive epilepsy phenotype was investigated. Our results showed that MRP1 expression in lymphocytes was significantly lower in epileptics than in healthy subjects. Non-responders had lower MRP1 mRNA content in lymphocytes than responders. We did not find any difference in MRP2 expression between epileptics and healthy volunteers. MRP2 mRNA levels in lymphocytes were higher in non-responders than in responders. However, at protein level epileptic patients had significantly lower MRP2 content in lymphocytes than controls. MRP2 protein content did not differ in responders and non-responders. There was no reliable correlation between MRP2 mRNA expression and MRP2 protein content in lymphocytes. Epileptics had significantly lower MDR1 expression in lymphocytes than healthy individuals. MDR1 expression was decreasing according to the consumption of antiepileptic drugs and seizures frequency: patients after neurosurgery had significantly lower MDR1 expression than patients after combined therapy and monotherapy. MDR1 expression was significantly lower in non-responders than in responders. At protein level epileptics had lower P-gp content than controls. Detected P-gp amount in lymphocytes did not differ between responders and non-responders. Rhodamine efflux from lymphocytes and NK cells did not differ significantly between epileptics and healthy subjects, but it was higher in patients after neurosurgery than in patients after monotherapy. Rhodamine efflux from NK cells, which are known to express the highest levels of P-gp, was significantly higher in non-responders than in responders. In this study, we showed that MRP1 mRNA expression in lymphocytes was significantly correlated to its expression in the brain. We detected also a significant co-correlation between MRP1 expression in the hippocampus and MDR1 expression in lymphocytes. We found no evidence regarding the impact of the MDR1 polymorphisms on mRNA expression, P-gp content and rhodamine efflux from lymphocytes. Our data showed lack of evidence regarding the impact of the MRP2 polymorphisms on mRNA expression and protein content. We did not detect any association between MDR1 or MRP2 polymorphisms and non-responsiveness in epilepsy or epilepsy in the main. In conclusion, our results suggest that lymphocytes are an appropriate surrogate for studies on changes of multidrug transporters expression in epilepsy. Lymphocytes as an easily accessible tissue might serve as a marker for responsiveness to antiepileptic drug therapy in epilepsy studies.
The biodiversity of marine microorganisms opens a promising potential for the discovery of new technical enzymes. During this study a characterization of marine microorganisms, isolated from Arctic or Antarctic ice, sea water or sediment from the ocean was performed based on a comprehensive strain collection at the Alfred-Wegener-Institut für Polar- und Meeresforschung. These marine psychrophilic bacteria indicated a wide spectrum of extracellular cold-active enzymes. 16S rRNA sequencing revealed that many of these psychrophilic bacteria represent new species. Characterization of selected isolates by means of transmission electron or raster electron microscopy showed remarkably pleomorphic cellular structures throughout their growth. The major part of this thesis focuses on a marine Antarctic, psychrophilic bacterium (strain ANT/505) isolated from sea ice covered surface water from the Southern Ocean, which was identified to express a very uncommon enzymatic activity for the marine environment, namely a pectinolytic activity. The sequencing of the 16S rRNA of isolate ANT/505 and biochemical tests indicated a taxonomical affiliation to the specie Pseudoalteromonas haloplanktis. The supernatant of this bacterial isolate showed after growth on citrus pectin three different pectinolytic activities. By activity screening of a genomic DNA library of isolate ANT/505 in Escherichia coli, two different pectinolytic clones could be isolated. Subcloning and sequencing revealed two open reading frames of 1671 and 1968 nt corresponding to proteins of 68 and 75 kDa. The deduced amino acid sequence of the two orfs showed homology to pectate lyases from Erwinia chrysanthemi and Aspergillus nidulans. The pectate lyases contain signal peptides of 17 and 26 amino acids length that were correctly processed after overexpression in E. coli BL21. Both enzymes were purified by anionic exchange chromatography. Maximal enzymatic activities for both pectate lyases were observed at a temperature of 30°C and a pH range of 9-10. The Km values of both lyases for pectate and citrus pectin were 1 g⋅l-1 and 5 g⋅l-1, respectively. Calcium was required for activity on pectic substrates, while the addition of 1 mM ethylenediaminetetraacetic acid (EDTA) resulted in complete inhibition of the enzymes. These two cold-adapted enzymes represent the first pectate lyases isolated and characterized from a marine bacterium. Further cloning and sequence analyses revealed that PelA from P. haloplanktis is an exceptionally big bifunctional enzyme featuring pectate lyase and pectin methylesterase activity. The deduced amino acid sequence of the pectin methylesterase domain showed homology to group I pectin methylesterases from Erwinia chrysanthemi and Erwinia carotovora. The pectin methylesterase domain of PelA was found to show highest homology to a potential pectin methylesterase from Saccharophagus degradans strain MD2-40. Maximum pectin methylesterase activity of PelA was detected at a pH of 7.5 and a maximum temperature of 30°C. This cold-adapted enzyme revealed high remaining pectin methylesterase activity at low temperatures around 5°C and was quickly unstabilized at temperatures above 45°C. The analysis of the localization of the two pectinolytic genes on the genome of P. haloplanktis ANT/505 revelaed that these pectinase genes are expressed from independent cistrons, which are not clustered but located at distant positions on chromosome I of the P. haloplanktis genome. It was found that the transcription of both pectinase genes is induced by the presence of pectin. By means of primer extension the promoter regions of both cistrons were detected.
Recent geochemical and mineralogical alteration processes in tropical coastal sediments of Vietnam
(2006)
The dissertation contains two main parts: (i) Syn-sedimentary hydrodynamic processes & relationship with elemental distribution, clay matter, (ii) Short-term mineral alteration during early diagenes. Samples were taken from the uppermost one metre (<50 year old in RRD, < 300 y old in south central VN). In part one, three principal hydrodynamic factors can be revealed based on End-Member Modelling Algorithm (EMMA), for the polymodal grain-size distribution patterns in coastline of VN (i) Accumulation factor: accumulation of terrigenous sediments linked with a grain size separation (distance dependence), (ii) Erosion factor: synsedimentary erosion by wave activities, (iii) Aeolian factor: deposition from neighbour sand bar by wind (typically only for low sedimentation rate, like in South Central Coast but not to detect in RRD). Distributions of clay matter and chemical elements in the coastal sediments in Vietnam are strongly influenced by hydrodynamic forces (distance from the coastline). In part two, particle-wise analysis by TEM allowed to determined four main mixed layer series: di-Vermiculite/Smectite-ml, Kaolinite/ Expandable-ml, Illite/Smectite-ml, Chlorite/Saponite-ml. Three principal mineral alteration processes can be detected in coastal sediments during early diagenesis: Dissolution, Smectitization, Kaolinitization, based on XRD (CSD, peak area) & TEM-EDX (particle morphology, chemical formula, polytype, particle frequency). Dissolution process of clay matter is typically in the coastal alkaline condition. It is a function of diagenetic time. Dissolution begins with a higher degree of dislocation and is followed by step-wise delamination & dissolution of the first stacks Smectitization (mirrored in diVS-ml series) alters mica-like structures (illite, dioctahedral vermiculite) to smectitic structures (Beidellite, Montmorillonite). Smectitization process occurs in group-wise layer by layer transforming mechanism (mica-like layer to smectitic layer). Each step is indicated by a gauss-like distribution of the octahedral layer charge with K as trigger. Kaolinitization of KE series alters smectitic structure (beidellite, smectitic KE-ml) to kaolinitic structure (kaolinitic KE-ml, kaolinite) "interlayer by interlayer" transformation of KE-ml series is comparable to kaolinitization mechanism discussed by Dudek et al. (2006).OH- groups in ambient could be the trigger. Mangroves biota influences the sediments in two main pathways: Nutrients supply & trapping function (clay matter, heavy metals)Interaction of active root-layer: intensification of dissolution, smectitization & kaolinitization: uptake of K, Na by mangrove root is possible trigger Human activities like shrimp cultivation have stopped the influences of the former active roots.Besides, erosion process related to water discharge gives rise to dispersion of clay species & heavy metals => more toxic for ecosystem.
The non-natural substances in commonly used UV protection creams such as TiO2, are known to have a photocatalytic side effect, which is very harmful to human skin. This study presents some properties of clays and clays minerals concerning UV protection potential, which can be very helpful for the development of new UV protection cream generation. Clays and clay minerals are demonstrated that they have potential to absorb UV-radiation. The structures of clay particles in cream were shown to be dependent on the layer charge of clay minerals. The total amount of Fe2C>3 in chemical composition of clay plays a key role in determining the UV-absorption ability of the clay matter. Moreover, the UV-absorption ability also depends on the expandable or non- expandable property of the clay. The studies were also performed on the mixtures of wool-wax-alcohol cream and nanosuspension obtained by the extraction of fungi mass Ganoderma pfeifferi by using plantacare together with clay. The combination of clays and nanosuspension increased its UV-absorption ability. The skin model test was performed in vivo in mouse ears with skin flora Escherichia coli and infectious bacteria Staphylococcus aureus in order to determine the effects of cream samples on skin under UV irradiation and skin infection. From the results of characterization of clays and clay minerals properties in UV protection cream, this study also brings some ideas about products designing.
Although the benefit of expedient antibiotic therapy remains unquestioned, little is known about the effects that are unrelated to their antimicrobial property but which the antibiotics may exert upon the septic microcirculation. Impairment of intestinal microcirculation has been recognized as an important factor in the pathogenesis of the septic syndrome (intestine = ¡°motor¡± of multiple organ failure). To examine the effects of various antibiotics on microcirculation is justified by the fact that one of major features of sepsis is disturbance of microcirculation. However, monitoring of pharmacological effects on intestinal blood flow is nearly impossible during acute therapy in humans and requires sophisticated equipment when applied to experimental animals. Therefore, the aim of this study was to evaluate the effects of common antibiotics on intestinal microcirculation using intravital microscopy (IVM) and on the release of the cytokines in septic and endotoxemic rats. In a first series of experiments we induced sepsis by using colon ascendens stent peritonitis (CASP) model in the rat (16 hours prior microscopy). We evaluated the effects of common antibiotics on intestinal microcirculation using intravital microscopy (functional capillary density (FCD) and leukocyte-endothelial interactions) and on the release of the cytokines TNF-¥á, IL-1©¬, IL-6 and IL-10. Metronidazole (MET) (10 mg/kg); imipenem (IMI) (20 mg/kg); tobramycin (TOB) (25 mg/kg); vancomycin (VAN) (70 mg/kg); and erythromycin (ERY) (5 mg/kg) were given intravenously 16 hours following sepsis induction. To differentiate antimicrobial from anti-inflammatory effects we performed a second series of experiments using endotoxin (LPS, i. v.) and intravital microscopic examination was performed 2 hours later. Cytokine release was estimated at the end of the experiments. In the CASP model, acute administration of metronidazole was associated with an improvement of markers of the intestinal microcirculation in septic rats (CASP). Our study showed that vancomycin stimulated leukocyte rolling, while erythromycin prevented the activation of leukocyte-endothelial interaction in postcapillary intestinal venules (V1) that occurred within 16 hours after CASP. TNF-¥á release in untreated CASP rats was twice as high in comparison to all antibiotic-treated CASP rats, except in CASP rats treated with tobramycin. Key findings of the present study are that MET and ERY were more potent than other antibiotics in improving the intestinal microcirculation in the CASP model. Protective effects of metronidazole, erythromycin and vancomycin upon the microcirculation were found in LPS model. The administration of MET or VAN or ERY led to significantly higher FCD values within the longitudinal muscular layers. Metronidazole and erythromycin significantly reduced the n umber of sticking leukocytes within the V1-venules of LPS-challenged animals. Leukocyte rolling flux was significant increased within the V1- and V3-venules of the endotoxemic rats treated with VAN. Some antibiotics showed immuno-modulatory effects: MET or IMI or VAN treated LPS rats showed increased IL-10 levels; while ERY treated LPS rats showed decreased IL-1©¬ and increased IL-6 concentrations. In conclusion, metronidazole and erythromycin exerted a positive influence upon the intestinal perfusion not only within septic microcirculation (anti-bacterial effect) but also in a pathogenically independent manner (anti-inflammatory effect); vancomycin had only anti-inflammatory actions in the endotoxin model without bacterial infection. Imipenem and tobramycin had no effect on intestinal microcirculation in septic and endotoxemic rats. The clinical usefulness of studies such as this is that they could provide important information about possible side effects or indicate some potential beneficial effects of the antibiotics. They can influence not only microcirculation but also inflammatory processes by some mechanisms that are probably unrelated to their antibiotic effect. However, these effects may be particularly relevant to the intestinal microcirculation which plays an essential role in the development of multi-organ failure in the instance of sepsis.
The toluene-degrading and solvent-tolerant strain Pseudomonas putida DOT-T1E was investigated with respect to its suitability and economic efficiency as biocatalyst in aqueous-organic two-phase systems with aliphatic solvents as organic phase (Rojas et al. 2004, chapter 4 and 5) and to its adaptive responses to the solvent decanol. The adaptive changes on the level of cell morphology (chapter 2), membrane fatty acids and permeability (chapter 3), as well as energetics and surface properties (chapter 5) of P. putida DOT-T1E have been investigated in order to ascertain information about the strain's suitability for two-phase biotransformation systems (chapter 4). The morphological adaptation to the presence of solvents was observable in changes of the cell size of P. putida DOT-T1E. Those changes were dependent on the cellular activity and occurred only after addition of non-lethal solvent concentrations. The cells reacted to the presence of organic solvents by decreasing the ratio between surface and volume of the cells and therefore reducing their relative surfaces (chapter 2). The cell surface and especially the cytoplasmic membrane are the major targets for toxic effects of membrane-active compounds like solvents. The mechanism of the cis-trans isomerisation of unsaturated fatty acids counteracts the fluidizing effect of solvents by increase the ordering of the membrane and therefore its rigidity. By comparing the responses of the cells to a series of stress factors (like solvents), a direct correlation between the activation of this mechanism and the well investigated K+-uptake pumps was observed (chapter 3). Huertas et al. (1998) reported that this strain tolerated concentrations of heptane, propylbenzene, octanol, and toluene of at least 10 % (vol/vol). 1-decanol is, in comparison to toluene, less hazardous and volatile, and it possesses good extraction properties for the desired fine chemical products. In further investigations of possible biotechnological processes, it was discovered that decanol is also a more suitable solvent as organic phase (chapter 4). Although the cells of P. putida DOT-T1E needed additional energy for their adaptation to the presence of the solvent decanol, they were able to maintain or activate their electron transport phosphorylation allowing homeostasis of ATP level and energy charge in the presence of the solvent, at the price of a reduced growth yield. On the other hand, significantly enhanced cell hydrophobicities converging with more negative cell surface charges were observed in cells grown in the presence of 1-decanol (chapter 5). It is however important to note that all the cell’s properties observed are closely linked to each other since they are all part of the adaptive response of the cells. It can be concluded that the easy adaptability and good growth properties of Pseudomonas putida DOT-T1E in the presence of the organic solvent 1-decanol make this system an excellent candidate for two-phase fermentation processes. Moreover, the absence of differences in the energetics of the bacteria during exposure to 1-decanol as compared to bacteria that grew in the absence of 1-decanol, support that this organism can be used for the industrial production of fine chemicals in an economically sound manner.
For many years, rangeland ecologists have debated about whether the state of semi-arid and arid rangelands is the expression of an ecological equilibrium or non-equilibrium dynamics reached in response to grazing livestock. Since the problem has been considered at different spatial scales, it is recognised that the competing concepts of equilibrium and non-equilibrium dynamics need to be integrated. Furthermore, the role of environmental variables as vegetation driving factors has long been ignored in the discussion on grazing effects on ecosystems. Present thesis, examines the dependence of plant communities on environmental in particular site-ecological conditions in three ecosystems of Western Mongolia established along a precipitation gradient to detect the vegetation-driving ecological factors involved. Furthermore, grazing impact is exemplary assessed in a desert steppe at additional spatial scales of plant communities and population. At the landscape level, a classification of plant communities in dependence on environmental conditions is carried out. Additionally, the investigations focused on the impact of grazing on soil and on the occurrence of grazing-mediated plant communities. Data were sampled along an altitudinal gradient between 1150 m to 3050 m a.s.l. from arid lowland with desert steppe via semi-arid mountain steppe to humid alpine belt. Within each altitudinal belt, data sampling was carried out along grazing gradients, established from grazing hot spots to areas distant from them. By means of an environmentally based vegetation classification, factors with highest explanation values for largest variation in vegetation were identified and considered as most responsible for vegetation patterns. To validate and affirm the classification, three different statistical methods are applied: environmentally adjusted table work of vegetation relevés supported by cluster analysis of species distribution, detrended correspondence analysis of vegetation data separately from environmental data, and the principle component analysis of only environmental data. Vegetation-driving factors change along the altitudinal gradient from abiotic forces in the desert steppe, as e.g. altitude and soil texture, to abiotic and biotic forces in the alpine belt represented by soil texture, soil nutrients and grazing. Vegetation and soil of all ecosystems respond to grazing but with different patterns and to a different extent. While desert steppe does not indicate grazing communities, mountain steppe demonstrates grazing communities at fertilised sites and alpine belt at nutrients depleted sites. Thus, the grazing sensitiveness of the ecosystems is assumed to be linked with plant productivity and the role of vegetation as site-determining factor (Chapter 2). To examine grazing impact at lower spatial scales on desert steppe as the ecosystem with lowest grazing sensitiveness at the landscape scale, at community scale the total number of species, the total vegetation cover, the percentage of annual species, the cover of annual species, and properties of soil nutrient along gradients of grazing intensity within three different communities were assessed. Vegetation parameters respond to grazing in different ways, and the responses of the same parameters vary between plant communities. Correlations with grazing intensity indicate only partly statistical significance. Significant correlations of grazing intensity with concentrations of soil nutrient point to eutrophication in two communities. A comparison of vegetation and soil properties refers to a greater indirect influence of grazing via increased soil nutrients than the direct effect on vegetation (Chapter 4). At the population level, data about stand density, aboveground biomass, individual plant weight, and the proportion of flowering plants of the dominant dwarf semi-shrub Artemisia xerophytica were collected along a grazing gradient. Soil data were used to distinguish between grazing and edaphic influences. All parameters of Artemisia xerophytica reflect the assumed gradient of grazing intensity up to 800 m distance from the grazing hot spot. As grazing pressure decreases, plant density and total biomass per plot increase. The average shrub weight, an indicator of plant vitality, is related to both: distance from the grazing hot spot and stand density, which may be explained by additional intraspecific competition at higher densities. At a longer distance, these effects are masked by variations in soil parameters determining water availability, leading to quite similar degradation forms. These results are in contrast to other studies carried out at the scale of plant communities which did not detect significant changes along a grazing gradient. One explanation is the different map scale: the study took place only within a single plant community comparing populations of one species (Chapter 3). The comparative study demonstrates that even arid desert steppes of western Mongolia display equilibrial and non-equilibrial properties, depending on the observational scale: while no grazing mediated plant communities could be identified at the landscape scale as predicted by the non-equlilibrium model, at the community level vegetation parameters imply an intermediate position between equilibrium and non-equilibrium system. At the population level, the results clearly reflect the grazing gradient as predicted by the equilibrium model (Chapter 4). As a consequence, the assessment of vegetation dynamics and grazing impact in rangelands requires a multiple-scale approach that duly considers different vegetation properties responding differently to grazing, climatic and edaphic variability at different spatial scales. It is further suggested, that future research should draw comparisons between landscapes that co-evolved with herbivory, and those that did without (Chapter 4).
The thesis contains 6 chapter and mentions about the influences of sea level change, climate, tectonic into the sedimentary process. The results show that late Pleistocene facies mostly are weathered facies which content gibbsite-kaolinite, limonite. In transgression, facies assemblage includes lagoon, tidal and estuary. The composition are in-situ reworked minerals like illite, gypsum. In regression, facies are shallow marine, prodelta, delta front, distributary lobe, swamp, tidal and beach, channel infill, flood plain, lake. Abundant minerals are named like smectite, illite, chlorite, quartz, feldspar, rock fragments, gypsum.Gypsum is the evaporited mineral easily to be formed in coastal environment of Red River Delta. It is a good indicative mineral for distinguishing the deposits formed in dry season of monsoon regions. Smectite is good indicative mineral for sea environment which mostly related with the transference and low accumulation and new formed in climate with wet and dry periods. Kaolinite-gibbsite is an indicator of strong chemical weathering with high precipitation. The stratigraphy can be divide into trangressive systems tract (10-8.5 cal. kyr BP) and highstand systems tract with aggradational-progradational parasequence set (8.5-6.5 cal. kyr BP) and progradational parasequence set (6.5 cal. kyr BP-today, with subsets 6.5-4.0; 4.0-1.5; and 1.5-0.0 cal. kyr BP). The subsidence process which reflex in accumulation rate regarded to not only sea level change, tectonics but also human impact - dyke build plays the main role to increased sedimentary thickness. The influence of source variation and climate change are recorded on mineral composition. In late Pleistocene, materials are chemical weathering authigenic components during warm/wet climate. In transgression, dominated materials are reworked terrigenous and chemical weathering components during warm/dry and cool/wet climate. In regression, materials are low maturity, suffered by physical weathering transported from surrounding mountains during 3 warm/dry or wet - cool/dry or wet big climate cycles.
Proteomic signatures select the physiology state of the cell. By using 2-D technique, proteome signature of Bacillus subtilis under different stresses and starvations are analyzed. Consequently, a proteomic map of Bacillus subtilis in non-growing phase was created. The ammonium and tryptophan as well as phenol and catechol stress are analyzed using both of proteomics and transcriptomics. And the proteomic map represents a good application in the prediction of the mode of action of phenol and catechol stress.
In the present thesis, a systematic study of beam driven Alfvén eigenmodes in high-density and low-temperature plasmas of the W7-AS stellarator is performed. The device went out of operation in 2002 and the study is based on stored experimental data. Alfvén instabilities can roughly be divided into ideal MHD Alfvén eigenmodes and those existing due to kinetic effects. The spectrum of ideal MHD Alfvén waves in toroidal fusion devices consists of a continuum of stable waves that are strongly localized. Weakly damped, discrete eigenmodes can exist in gaps of the continuous spectrum which are formed by plasma inhomogeneities and the coupling of Alfvén continua. This allows an identification of ideal MHD Alfvén eigenmodes in terms of their frequency and mode numbers. Kinetic effects can modify this spectrum and cause additional types of eigenmodes, the kinetic Alfvén eigenmodes (KAE) and energetic particle modes (EPM). The goal of this thesis is twofold: (I) identification and description of fast particle driven Alfvén instabilities in W7-AS, and (II) study of energetic particle losses induced by Alfvén instabilities. The reconstruction of the ideal MHD plasma equilibrium for each discharge with sufficient accuracy is the very foundation of all subsequent steps. This is achieved, based on measured plasma parameter profiles that are further refined by validating them to the measurements of other, independent plasma diagnostics. The applied scheme is inspired by an approach of Integrated Data Analysis (IDA) to combine different diagnostic data and provide combined uncertainties. After mode number analysis and eigenmode identification, the theoretically expected, linear growth rate of the instability is calculated where possible, and the various contributions of the fast particle drive to the instability of the mode are identified. Alfvénic activity recorded by the Mirnov diagnostic is analyzed, which consists of a set of spatially distributed coils that measure magnetic fluctuations. On W7-AS, the probes are arranged in three poloidal arrays at different toroidal positions. The spacing between the probes is non-equidistant. In addition, the signals of one probe array are digitized with a different sample rate. These characteristics prohibit the straight-forward use of standard tools available for harmonic analysis. Instead, a new tool has been developed and thoroughly tested. It is a multi-dimensional extension of the Lomb periodogram, able to provide reliable time-resolved frequency and mode number spectra in the case of uneven datapoint spacing. Numerical studies of this periodogram show a good performance with respect to mode number resolution given the low number of available probes, and robustness against perturbations of the signal. Only two of the probe arrays can be used for the analysis of eigenmodes with frequencies >70 kHz, such that for high-frequency phenomena insufficient information about the mode numbers is available. A total of 133 different Alfvén eigenmodes is studied in discharges from different experimental campaigns. A restriction to discharges from various high-beta campaigns with neutral beam heating is required to allow for a realistic reconstruction of plasma equilibrium and velocity distribution functions of energetic particles. The discharges are characterized by high density, ne = 5 x 1019 m-3 to 2.5 x 1020 m-3 at relatively low temperatures of Te = Ti = 150 ... 600 eV. Alfvén eigenmodes often appear transiently in the startup phase of these discharges, where density and heating power are being ramped up. Occasionally, Alfvén eigenmodes are seen in the stationary, high-beta phase in the presence of considerable neutral beam heating. Most of the Alfvén eigenmodes are successfully classified as ideal MHD eigenmodes. 19 global, 47 toroidicity-induced and 8 ellipticity-induced Alfvén eigenmodes (GAEs, TAEs, and EAEs, respectively) are unambiguously identified by their mode numbers and frequencies. Excellent agreement between experimentally observed mode number spectra and theoretically calculated eigenmode structure is shown for a TAE example. Additional 13 events are found to have frequencies inside the EAE gap and could possibly be EAEs. Evidence for high-frequency Alfvén eigenmodes (mirror- and helicity-induced Alfvén eigenmodes) is seen, but can not be proven rigorously due to uncertain mode numbers and the complexity of the Alfvén continuum. The remaining 41 Alfvén eigenmodes can not be classified to be one of the above cases. Reasons are either high frequencies, mode numbers obscured by far-field effects, or mode numbers that could not be related to ideal MHD Alfvén eigenmodes. A selection of these shows indications of strong non-linear wave-particle interactions and are assumed to be EPMs. Kinetic Alfvén eigenmodes are not expected to exist in the experimental conditions that were studied. The radially resolved velocity distribution function is used to describe the parameter regimes in which the modes are observed in terms of the dimensionless parameters vb/vA (beam velocity normalized to the Alfvén velocity) and ßfast/ßth, where beta is the ratio of plasma pressure to magnetic pressure. The first parameter describes through which of the possible resonance velocities particles can interact with the eigenmode. A peculiarity of the fast particle dynamics in fusion devices is that they can resonantly interact with Alfvén eigenmodes through sideband resonances even if v < vA. The second parameter describes the energy content of the destabilizing fast particle population compared to the potentially stabilizing thermal plasma component. These parameters contain relevant information about the instability of an eigenmode and such diagrams are given for all observed modes. In addition to that, the expected linear growth rate of gap modes is calculated based on a theoretical model that extends the ideal MHD by a perturbative, drift-kinetic description of the energy exchange between waves and circulating particles, neglecting the effects of trapped particles. For the discharges under consideration the thermal electron speed is comparable to vA and the electrons provide a significant Landau damping contribution. Due to strong density gradients near the plasma boundary in most of the discharges, the thermal ions can provide a small drive via the spatial inhomogeneity which does not overcome the electron damping, however. The drive by spatial inhomogeneity of thermal ions requires a certain propagation direction of the mode and is equally stabilizing for opposite mode numbers. The fast particles also contribute to the growth rate via spatial inhomogeneity, velocity gradients and velocity anisotropy terms are negligible in W7-AS. Most of the observed GAE or EAE modes have negative mode numbers, which correspond to a propagation direction for which the spatial inhomogeneity of thermal and beam ions is predicted to be stabilizing. A fast particle drive of these modes is not confirmed, whereas the TAEs are found to be strongly destabilized by neutral beam injection. The distribution of plasma parameters for discharges showing TAEs in terms of the dimensionless stability parameters suggests an instability threshold that is qualitatively confirmed by an exploration of the parameter space with the theoretical model. Wave-induced, resonant losses of energetic ions scale linearly with the wave amplitude. To identify them, correlations between ion loss probe signals and wave amplitudes are searched, where correlation times in the order of the slowing-down time of energetic particles are expected. Significant correlations can be established only exceptionally for 3 of the identified ideal MHD Alfvén eigenmodes. Those Alfvén eigenmodes, however, which are assumed to be EPMs frequently show severe losses of energetic ions that are visible in the time traces of the plasma energy as well.
The Gram-positive bacterium Bacillus licheniformis is an important industrial host for the production of enzymes. Genomic DNA arrays and proteomics are being used to investigate the physiology of this bacterium. A genome-wide transcriptional profiling analysis of the adaptation of B. licheniformis to phosphate starvation shows more than 100 induced genes. Most of strongly induced genes belong to the putative Pho regulon. The data of the transcriptome analysis have been verified by the analysis of the extracellular and cytoplasmic proteome. The main response of B. licheniformis to glucose starvation was a switch to the usage of alternative carbon sources. In addition, B. licheniformis seems to be using other organic substances like amino acids and lipids as carbon sources when subjected to glucose starvation. This was indicated by the induction of a high number of genes the proteins of which are involved in amino acid and lipid degradation. During nitrogen starvation genes necessary for the recruitment of nitrogen from alternative sources were induced, e.g. genes for nitrate and nitrite assimilation, several proteases and peptidases. Both starvation conditions led to a down-regulation of the transcription of most vegetative genes and subsequently to a reduced synthesis of the corresponding proteins. Only a few genes were induced by both starvation conditions like yvyD, citA and the methylcitrate shunt genes mmgD, mmgE and yqiQ. Data of this study use to better understand the physiology of this bacterium during fermentation processes and thus to identify and circumvent bottlenecks of B. licheniformis based bioprocesses. In addition, the phytase promoter was tested for the construction of an alternative phosphate regulated expression system for B. licheniformis.
The thesis contains 6 studies and mentions the validation and comparison of several methods for measuring body composition and assessing nutritional status in different groups of pediatric patients. It also deals with the effects of infant formulas supplemented with nucleotides on the growth and body composition of healthy term and preterm babies. The first study shows that BMI-standard deviation score and %BF have a moderate agreement in classifying the nutritional status. The second study done in preterm neonates points out that bioelectrical impedance provides only insignificant information on fat-free mass (FFM) compared to anthropometry. The third study validates published prediction equations and develops a new equation in a group of children with Crohn's disease. The equation of Schaefer et al. is the best to predict FFM. The accuracy of a prediction equation is influenced by weight, height and age other than impedance index alone. The fourth study indicates that impedance index is better than weight, height squared as the predictor for estimating FFM. Addition of weight improves the predictive accuracy of prediction equations. The fifth study shows that birth weight centiles gives a rough estimation of nutritional status. Weight-for-length ratio shows the best correlation with fat mass. The last study shows that weight gain and gain in lean mass are higher in the standard formula group than in the groups nourished with nucleotides or breast milk.
Synthesis and evaluation of pseudosaccharin amine derivatives as potential elastase inhibitions
(2006)
Elastase is a serine protease which by definition is able to solubilize elastin by hydrolytic cleavage.Human Leukocyte Elastase, HLE (EC 3.4.21.37), is involved in deseases such as adult respiatory distress syndrome, pulmonary emphysema, smoking related chronic bronchitits, ischemic-reperfusion injury and rheumatoid arthritis. Hence, the elastase inhibitors have clinical utility in these diseases. Heterocyclic compounds are one of the most important classes of the elastase inhibitiors. In the present work different pseudosaccharin amine derivatives were synthesized and tested against the elastase. The synthesis of pseudosaccharin amine dervatives was carried out from the amines and(1,1-dioxobenzo[d]isothiazol-3-ylsulfanyl)acetonitrile in different solvents. Futhermore, the pseudosaccharin amines were obtained by refluxing the thiosaccarinates in absolute acetic acid. The reaction of 3-ethoxybenzo[d]isothiazole 1,1-dioxide with different amines in dioxane under reflux resulted into the desired pseudosaccharin amine derivatives in higher yields. Pseudosaccharin chloride was also used in the synthesis of these derivatives.A detail study of the synthesis of pseudosaccharin amine dervatives from the above differnt routes is described. Peptides were also synthesized by using the mixed anhydride method. The ester, acid, amide and peptide derivatives were tested against the Porcine Pancreatic Elastase (PPE) and Human Leukocyte Elastase (HLE). The esters were found to be the reversible inhibitors of HLE. The process of the PPE inhibion by cyanomethyl(2S)-2-(1,1-dioxobenzo[d]isothiazol-3-ylamino)-3-methylbutanoate was studied. Michaelis-Menten curve and Lineweaver-Burk double reciprocal plot were constructed in order to study the kinetic of this reaction. The compounds showing high inhibition of HLE were further stuied for determination of their inhibitory constant(Ki). The esters were found to be the higly active compounds against HLE. The cyanomethyl(2S)-2-(1,1-dioxobenzo[d]isothiazol-3-ylamino)-3-methylbutanoate and cyanomethyl(2S,3S)-2-(1,1-dioxobenzo[d]isothiazol-3-ylamino)-3-methylpentanoate showed the competitive reversible inhibition of HLE.The cyanomethyl(2S,3S)-2-(1,1-dioxobenzo[d]isothiazol-3-ylamino)-3-methylpentanoate is highly potent inhibitor of HLE. The possible mechanism of inhibition of elastase by these compounds is discussed. Molecular modelling of some of the ester derivatives is also discussed.
A fluorescent lamp driven with an 'instant start electronic control gear' starts in a glow mode. In the glow mode, which lasts typically for tens of milliseconds, the cathode fall exceeds hundreds of volts. This causes high energy ion bombardment of the electrode which heats the electrode, and induces a transition from glow to arc mode. In the arc mode the electrode emits thermionically and the cathode fall drops to the 12 – 15 V range. Unfortunately, the high energy ion bombardment during the glow mode leads also to intense sputtering of electrode material, including tungsten as well as emitter. Thus, instant started fluorescent lamps often suffer from early failures due to coil fracture. Therefore, the investigation of tungsten erosion during instant start is necessary and was the main goal of this work.
The density of neutral atomic tungsten is determined by laser-induced fluorescence (LIF) and optical emission spectroscopy measurements (OES). Investigations are performed on a low-pressure argon dc discharge and on commercial fluorescent lamps. To include the entire temperature profile along the electrode the diffuse and spot operation modes of the dc lamp are studied experimentally and theoretically. The measured dependencies of the cathode temperature along the coil on the discharge and heating parameters are compared with the calculated results. For the first time the tungsten erosion during instant start of commercial fluorescent lamps was experimentally investigated in this work. The erosion process could be related to sputtering. A reconstruction of the temporal evolution of the absolute tungsten population density of the ground state during the glow mode was presented. The sputtered tungsten density increases immediately with the ignition, reaches a maximum where the discharge contracts at the end of the glow mode, and decreases some milliseconds before the glow-to-arc transition takes place. The maximum tungsten density was observed within a region of a few hundred micrometers only located at the discharge attachment point. The main result achieved in this work is that during the whole glow mode tungsten is sputtered. Therefore, the lifetime of instant started fluorescent lamps can be enhanced by reducing the duration of the glow mode. Additionally, the need for the application of different types of diagnostics for the observation of lamp ignition was shown due to different results of LIF, AAS and OES: The observation of excited tungsten atoms by OES shows the maximum emission signal at the glow-to-arc transition whereas by LIF and AAS measurements of tungsten atoms in the ground state the maximum density is found during the whole glow mode. This can be explained by the fact that the intensity of the spontaneous emitted light is related not only to the density but also to the degree of excitation.
The interaction of partially ionized plasmas with an electromagnetic field is investigated using quantum statistical methods. A general statistical expression for the current density of a plasma in an electromagnetic field is presented and considered in the high field regime. Expressions for the collisional absorption are derived and discussed. Further, partially ionized plasmas are considered. Plasma Bloch equations for the description of bound-free transitions are given and the absorption coefficient as well as rate coefficients for multiphoton ionization are derived and numerical results are presented.
Based on distributions of local Green's functions we present a stochastic approach to disordered systems. specifically we address Anderson localisation and cluster effects in binary alloys. Taking Anderson localisation of Holstein polarons as an example we discuss how this stochastic approach can be used for the investigation of interacting disordered systems.
1,1-Bis(trimethylsilyloxy)ketene acetals represent useful synthetic building blocks which can be regarded as masked carboxylic acid dianions. In recent years, a number of cyclization reactions of 1,1-bis(trimethylsilyloxy)ketene acetals have been reported. Functionalized maleic anhydrides represent important synthetic building blocks, which have been employed, for example, in the synthesis of γ-alkylidenebutenolides, maleimides, 5-alkylidene-5H-pyrrol-2-ones. Substituted maleic anhydrides are available by Michael reaction of nucleophiles with parent maleic anhydride and subsequent halogenation and elimination. Oxalyl chloride is an important synthetic tool for the synthesis of O-heterocycles. 3-hydroxymaleic (1-3) anhydrides were synthesised by one-pot cyclization of 1,1-bis(trimethylsilyloxy)ketene acetals with oxalyl chloride using TMSOTf as a catalyst. The Me3SiOTf mediated reaction of 1,1-bis(trimethylsilyloxy)ketene acetals with 3-silyloxyalk-2-en-1-ones, such as (4), afforded 5-ketoacids, such as (5). Treatment of the latter with TFA in CH2Cl2 afforded pyran-2-ones, such as (6-8). It has been found that 1,1-bis(trimethylsilyloxy)ketene acetals can behave as dinucleophile. Functionalized benzo-azoxabicyclo[3.3.1]nonanones (9-12), were prepared by regio- and diastereoselective condensation of 1,1-bis(silyloxy)ketene acetals with isoquinolinium and quinolinium salts and subsequent regioselective and stereospecific iodolactonization. Our next target was the reaction of silyl ketene acetals with pyrazine and quinoxaline. These reactions provide a facile access to a variety of 2,3-benzo-1,4-diaza-7-oxabicyclo[4.3.0]non-2-en-6-ones and 1,4-diaza-7-oxabicyclo[4.3.0]non-2-en-6-ones (13-14). The second part of my research work was concentrated on bis(silyl enol ethers). The TiCl4-mediated [3+3] cyclization of 2,4-bis(trimethylsilyloxy)penta-1,3-diene with 3-silyloxyalk-2-en-1-ones afforded 2-acetylphenols (15), which were transformed into functionalized chromones (16). The Me3SiOTf-mediated condensation of the latter with 1,3-bis(silyl enol ethers) and subsequent domino ′retro-Michael–aldol–lactonization′ reaction afforded 7-hydroxy-6H-benzo[c]chromen-6-ones (17-18). With regard to our on going investigation with bis(silyl enol ethers), we significantly extended the preparative scope of the methodology. We have successfully developed regioselective cyclizations of unsymmetrical 1,1-diacylcyclopentanes, such as 1-acetyl-1-formylcyclopentane, and also studied cyclizations of 2,2-diacetylindane, 1,1-diacetylcyclopent-3-ene and 3,3-dimethylpentane-2,4-dione. In addition, the mechanism of the domino process was studied. We have synthesised spiro[5.4]decenones (19) and that were transfored into bicyclo[4.4.0]deca-1,4-dien-3-ones (20-21), by domino ′Elimination–Double-Wagner-Meerwein-Rearrangement′ reactions. The Lewis acid mediated domino ′[3+3]-cyclization-homo-Michael′ reaction of 1,3-bis-silyl enol ethers with unsymmetrical 1,1-diacylcyclopentanes, such as 1-acetyl-1-formylcyclopentane, allows an efficient one-pot synthesis of functionalized salicylates containing a halogenated side-chain (22-23). A great variety of substitution patterns have been realized by variation of the starting materials and of the Lewis acid. The mechanism of the domino process was studied.
Expression of the T cell regulatory molecule ICOS (CD278) and LICOS (CD275) on human blood cells
(2006)
Expression of the T cell regulatory molecule ICOS (CD278) and LICOS (CD275) on human blood cells Summary General bacterial infections, which can lead to the clinical picture of sepsis, are a major concern in intensive care units (ICU) and mortality remains high. Recent data have shown that, besides an overreaction of the immune system, also immunosuppression also plays a role in the pathogenesis of sepsis. Immunosuppression has been documented in patients with polytrauma, stroke and burn wounds, which all confer a high risk of severe bacterial infection. Moreover, it has been shown that T cells have an important role in sepsis. A shift of a Th1 dominated T cell response towards a Th2 response has been described as a potential mechanism of immune suppression in patients with sepsis. One of the molecules on the surface of T cells that is involved in the Th2-mediated immune response is the Inducible Costimulator of T cells (ICOS). Its ligand, LICOS, is expressed on the surface of B cells and monocytes. ICOS ligation induces the production of anti-inflammatory cytokines, especially of IL-10. However, nothing is known about the expression of ICOS on T cells and that of LICOS on APCs in patients with severe trauma and stroke. Therefore, in the present study, in a first step, a recombinant human LICOS-Ig fusion protein was generated, which was then used as an antigen for the generation of anti-LICOS monoclonal antibodies. In three fusion experiments, 5,000 primay clones were screened and a single hybridoma was obtained, which produced monoclonal antibodies that specifically reacted with recombinant LICOS, both in form of the LICOS-Ig fusion protein and on the surface of a cell line transfected with a full-length LICOS transgene. Since, it turned out that the antibodies did not bind with high affinity to wild type LICOS, as it is expressed on primary human blood cells, phenotypic analyses were carried out with another anti-LICOS monoclonal antibody, which had become commercially available. Next, the expression of HLA-DR, CD86, LICOS, and ICOS, on the surface of monocytes (CD14+), B cells (CD19+) and T cells (CD3+, CD4+) in whole blood was measured by flow cytometry. Six patients with severe trauma and nine stroke patients were compared with 32 healthy donors. On CD14+ monocytes from healthy donors, the expression levels of HLA-DR and CD86 were over 90%, while the expression of LICOS was much lower (7,5%). In critically ill patients, HLA-DR, CD86 and LICOS expression were strongly reduced. CD86 and HLA-DR were co-regulated, while HLA-DR and LICOS were not. In healthy donors, virtually all B cells expressed HLA-DR and the majority of them co-expressed LICOS (72%), while only a small fraction were CD86+ (14%). After trauma and stroke, HLA-DR, as well as LICOS expression on these cells remained normal; CD86 had a tendency towards being downregulated in most of the trauma patients, while most of the stroke patients exhibited normal CD86+ levels. The levels of HLA-DR and LICOS on T cells in trauma and stroke patients were low and very similar to those of healthy donors. The fraction of CD3+ T lymphocytes or their CD4+ subpopulation, which expressed measurable levels of ICOS (64% and 48%, respectively), did not change after stoke or trauma. However, within the ICOS+ T cell population two subpopulations could be distinguished: ICOSbright and ICOSdim T cells. Interestingly, the ICOSbright subpopulation, but not the ICOSdim and ICOSnegative subpopulations, was markedly increased in all trauma patients and in most of the stroke patients. Given that CD86 was co-regulated with HLA-DR on monocytes it appears that, similar to HLA-DR, CD86 expression could discriminate between patients with a low and high risk of sepsis. In contrast, because of its low basal expression on monocytes and its low signal-noise ratio, LICOS expression levels are not informative. Since ICOS expression on T cells is tightly connected to IL-10 secretion, the high proportion of ICOS bright cells in critically ill patients might contribute to the high IL-10 serum concentrations, which have been reported to be linked to immunosuppression in these patients.
SUMMARY To date, Staphylococcus aureus is the most common cause of nosocomial infections and the species is becoming increasingly resistant to antibiotics. Beyond this, S. aureus colonises the nasal mucosa of circa 35% of the healthy population, so-called carriers. Importantly, S. aureus nasal carriage is a major risk factor for the development of S. aureus infections, which are commonly caused by the colonising strain. This underlines the importance of host factors for the outcome of S. aureus-host interactions. Despite the clinical importance of nasal carriage, little is known about humoral immune responses triggered by colonisation. Therefore, this thesis was focussed on the anti-staphylococcal antibody responses of S. aureus carriers and noncarriers. Staphylococcal superantigens (SAgs) served as indicator antigens for our studies. SAgs are virulence factors with extraordinary variability in the species S aureus and act as extremely potent T cell mitogens. To date, 19 different SAg gene loci are known in the species S. aureus, but molecular-epidemiological studies on the distribution of these genes are limited. Therefore, we established five multiplex PCRs for the detection of all known SAgs. With this robust and high-throughput technique we analysed the SAg gene patterns of more than 300 isolates, including 107 nasal isolates of S. aureus carriers and 88 blood culture isolates of hospital patients from Western Pomerania. The SAg gene patterns were highly heterogeneous, which can be explained by their localisation on mobile genetic elements (MGE), such as genomic islands, pathogenicity islands, phages and plasmids. Most isolates (~80%) harboured SAg genes, on average five to six, and SAgs of the enterotoxin gene cluster (egc) were by far the most prevalent. Additionally, we observed a strict correlation between the presence of SAg genes and the T cell mitogenic potency of clinical isolates. SAg-encoding MGEs can be distributed by two distinct mechanisms: horizontal transfer by bacteriophages and vertical transmission to daughter cells. To investigate the distribution of SAg genes within the S. aureus population, we determined the clonal relationship of our isolates by spa genotyping. Interestingly, SAg-gene encoding MGEs were not randomly distributed, but rather closely linked to clonal lineages. Each clonal lineage was characterised by defined combinations of SAg genes. These data suggest that the simultaneous assessment of virulence gene profiles and the genetic background strongly enhances the discriminatory power of genetic investigations into the mechanisms of S. aureus virulence. Indeed, the comparison of virulence genes within each clonal complex indicated a role in invasiveness for some MGEs, e.g. the exfoliative toxin D-encoding pathogenicity island, while rendering it unlikely for SAgs. It is known that neutralising serum antibodies against the SAgs SEA, SEB, SEC, SED and TSST-1 are frequently present in healthy individuals. However, the neutralising antibody profiles against more recently described SAgs or complex SAg cocktails as secreted by clinical isolates had not been determined so far. Therefore, we screened more than 100 sera for their SAg neutralising capacity with a neutralisation assay. We observed a marked heterogeneity and surprisingly large “gaps” in the neutralising capacity. Interestingly, the egc SAgs were inhibited only rarely (5-10%), whereas between 32 and 86% of the tested sera neutralised “classical” SAgs. This “egc gap” in the SAg-neutralising antibody profiles of healthy individuals was unexpected, since egc SAgs are by far the most prevalent SAgs. We could demonstrate that the “egc gap” is probably not due to different T cell activating properties of egc SAgs compared to classical SAgs, but rather to a differential regulation of SAg gene expression. S. aureus carriers have an increased risk of developing an S. aureus bacteraemia, which is in most cases caused by the colonising strain. Intriguingly, a large prospective clinical trial revealed a considerably higher mortality in noncarriers with invasive S. aureus strains compared to carriers with invasive disease. To explain these paradoxical findings, we hypothesised that in carriers partial immunity against the colonising strain may contribute to their improved outcome. We used SAgs as strain-specific indicator antigens. Importantly, sera from persistent carriers neutralised SAgs of their colonising strain with significantly higher efficiency than sera from noncarriers. This antibody response was strain-specific, since the antibody response of carriers against other SAgs did not differ from that of noncarriers. Thus, colonisation with S. aureus confers a strong and strain-specific antibody response against staphylococcal SAgs. We suggest that in carriers neutralising antibodies directed against SAgs and other staphylococcal virulence factors confer partial protection during systemic infections. This could explain the better prognosis of carriers with S. aureus bacteraemia compared to noncarriers. Moreover, our data imply that the key to understanding the pathogenesis of S. aureus disease may lie in the identification of host factors rather than bacterial factors. Such host factors could be the immune status and gene polymorphisms that contribute to colonisation, susceptibility to infection and outcome of infection. Finally, while the treatment of S. aureus bacteraemia with pooled immunoglobulins was performed in the past without significant success, our findings on strain-specific antibody profiles suggest that therapies with customised cocktails of monoclonal antibodies could have a higher efficacy.
Vegetation dynamics on abandoned terraces of Sicily: the course and driving factors of succession
(2007)
Secondary succession processes have been widely studied in Europe for some agroecosystems, but not for terraced ones. The first part of the present study focuses on a description of the plant communities involved in secondary succession processes on Sicily (Italy) a) from a floristic and structural point of view and b) from a species diversity point of view. In order to obtain these results, 129 vegetation relevés (sensu Braun-Blanquet) were made on abandoned terraces in five of the main terraced areas of Siciliy: 1) the Aeolian Islands, 2) Pantelleria Island, 3) Mt. Etna, 4) the Palermo Mts. and 5) the Hyblaean Plateau. Only abandoned vineyards or grain crop fields were selected as sample plots, always 50 m2-sized. The results of biodiversity evaluation by t-tests and ANOVA showed that vascular plant diversity is linked to disturbance regime and to abiotic factors (especially geological substrate). Especially grazing increases species richness. Moreover, it was found that on limestone species richness is higher than on volcanic substrates. Vegetation relevés were also analysed with DCA and TWINSPAN. The resulting 14 sample plot groups (= clusters) were then used to check the dynamic relations. From a floristic point of view, plant communities involved in secondary succession processes on Sicilian terraces are quite different between and within the five study areas. This is mainly due to different substrate and bioclimatic conditions. Moreover, vegetation is strongly influenced by abandonment age and disturbance status. If no disturbance biases succession, then plant communities evolve rather rapidly (30-50 years) to maquis communities. If frequent fires or intense grazing occur, secondary succession is blocked in a "steady state". The second part of the present study focuses on the colonization mechanisms of old fields by woody species. In a first section, the existence of 1) the neighbourhood effect and 2) the safe-site effect are checked by analyzing 51 transect relevés, made up of 357 subplot relevés (1x1m). The transects were made in target fields 1) with older neighbour (i.e. old succession stage characterized by maquis communities) and 2) with older neighbour absent within a 100 m-distance. All woody species individuals were counted, recording if they grew within the influence of a potential safe site (former crop plants of vine and the terrace wall base). Data evaluation by Kruskal-Wallis ANOVA and Mann-Whitney Rank Sum confirmed the existence of the two effects. Moreover, it was shown that animals as dispersal vectors strongly influence these effects. For the neighbourhood effect, seed dispersal distance is the crucial point, while for the safe site effect 1) passive facilitation (i.e. animals tend to create heterogeneous seed rain patterns because they frequent certain microhabitats more often than others) and 2) active facilitation (i.e. the positive influence of an existing woody or herbaceous plant individual on the establishment or the growth of another one) are crucial. The second section describes the performance of establishment of Quercus ilex L. in different microsites of terraced old fields. In November 2004, acorns were buried on a North-facing slope and on a South-facing slope in five different microsites: 1) under vine plants, 2) at wall bases, 3) under the canopies of isolated shrubs, 4) between small rock accumulations and 5) in open spaces (i.e. outside of any of the previously named microsites). In monthly checks, seedling emergence, survival, height and leaf number were recorded. Moreover, in April and July were measured air temperature and air humidity in the different microsites. Overall emergence rate was 52.4% (n = 1,020). More seedlings emerged on the South-facing slope (S; 59.8%) than on the North-facing slope (N; 45.0%). Emergence was higher when acorns were buried under vine plants and at the wall base than in other microsites of the old fields. At the end of the experiment (September 2006), 45.3% of all emerged seedlings were still alive (29.2% on N, 58.9% on S). Survival was higher in general on the South-facing slope, and higher under vine plants and at the wall base than in the open spaces of the old fields. From literature, it is known that seed vitality, seed germination and seedling survival of Quercus ilex are favoured by shady, wet and fresh conditions. The temperature and air humidity measurements showed that at the wall base, under vine plants and under isolated shrubs environmental conditions are milder than in open spaces. However, even if temperature and relative air humidity seem to play an important role for Quercus ilex seedling emergence and survival, they did not unambiguously explain the differences between the safe site types. A factor of major importance is probably soil moisture. As a last part, the present study discusses what does the obtained results mean for terrace landscape conservation and biodiversity management.
Under natural conditions, most parts of northeastern Germany would be covered by forests that would be dominated by beech (Fagus sylvatica) and oak (Quercus robur and Q. petraea). However, today most of the wooded area is covered by artificial monocultures of pine forests. This form of cultivation was recognised to be the cause of instability against calamities of pests as well as severe storms therefore in the early eighties of the last century this knowledge was used to start the conversion of the forests towards more nature-like stands. The ecological effects of the forest conversion on the soil, the fauna and the flora have been investigated in a nation-wide project supported by the Federal Ministry of Education and Research (BMBF) in the project “Future-oriented forest management”. The present work has been accomplished within the scope of this project and is concerned about the effects that different aspects of forest conversion have on oribatid mites. The present work shall serve to answer a number of questions about the distribution of oribatid mites and their reaction to environmental changes. The investigation was carried out on 12 plots in two sampling areas. 7 plots were chosen in the Müritz NP and 5 in Eberswalde. In both areas plots were chosen that resemble the different stages of forest conversion: one medium aged pine plot in each area, two medium aged mixed plots with pines and beeches in the Müritz NP and one mixed plot in Eberswalde as well as one beech plot in each area. Furthermore, in the Müritz NP the chance arose to investigate the effects of different age stages of the stands on the oribatid mites. Therefore, an additional young pine plot and two old mixed plots have been sampled. In Eberswalde, on the other hand, another emphasis was laid on the effects of a different nutrient content in the soil. Here, an additional pine plot and mixed plot, respectively, of a higher trophotopic level was sampled. In Eberswalde, an additional sampling was done in three plots (a beech plot, a mixed plot and a pine plot) to investigate the horizontal distribution of the oribatid mites in these habitats. The data were used along with others to ecologically characterise the different species. The sampling took place from 2000 to 2002. Within the scope of the doctoral thesis, 392 samples were analysed. 122 samples from one year from the Müritz NP and 270 samples from three years from Eberswalde were analysed. Altogether 155,450 oribatid mites from 82 taxa were found in these samples. The ecological characterisation of the species revealed that the various species react quite differently to the investigated factors. Most species occur with different abundances in different forest types, but their abundance often varies also in comparable stands of both sampling areas. This indicates that they react to climatic effects as well as to biotic and abiotic factors. The forest conversion from pine forests to beech forests causes the abundance of oribatid mites to decrease, probably due to the change of the humus form from mor or mor-like moder in pine forests to mull in beech forests, that is accompanied by a decrease of the abundance of fungi, the main food source for most oribatid mites. Furthermore, the species composition changed. Species like Camisia spinifer, Adoristes ovatus or Acrogalumna longipluma that are typical for pine forests disappeared, while other species like Achipteria coleoptrata or Chamobates voigtsi immigrated in mixed stands after the introduction of beeches. The age of the stands proved to be another important factor. The overall abundance of oribatid mites was higher in the older stands than in the younger stands, while the percentage of juvenile oribatids decreased towards the older stands. Furthermore, the dominance structure became more uneven and shifted toward a higher percentage of fungivorous oppiid and suctobelbid mites. Especially on the old mixed plots, Oppiella nova reaches a dominance value of about 60 %. The nutrient content of the soil seems to be a relatively unimportant factor on the community level as no significant differences with regard to overall abundance and the dominance structure could be recorded. However, the Canonical Correspondence Analysis showed that the nutrient content of the soil does influence the distribution of species, at least with regard to their individual abundance. In summary, it can be said that the distribution of the oribatid species is influenced by many factors, and the stocking is only one of these factors. Nevertheless, a group of four species could be established, that can be used as indicators for the success of the forest conversion towards more nature-like deciduous forests: Achipteria coleoptrata, Autogneta longilamellata, Chamobates subglobulus and C. voigtsi.
Aging is a risk factor for stroke. Animal models of stroke have been widely used to study the pathophysiology of ischemic stroke, which in turn helped to develop numerous therapeutic strategies. Despite the considerable success of therapeutic strategies in animal models of ischemic stroke, almost all of them have been proved to be unsuccessful in the clinical trials. One of explanation is that data obtained from young animals may not fully resemble the effects of ischemic stroke in aged animals or elder patients, causing the discrepancy between animal experiments and clinical trials. To investigate these differences with regard to age, pathway specific gene arrays were used to identify and isolate differentially expressed genes in periinfarct following focal cerebral ischemia. The results from this study showed a persistent up-regulation of pro-apoptotic and inflammatory-related genes up to 14 days post stroke, a 50% reduction in the number of transcriptionally active stem cell-related genes and a decreased expression of genes with anti-oxidative capacity in aged rats. Also, it was observed that at day 3 post-stroke, the contralateral, healthy hemisphere of young rats is much more active at transcriptional level than that of the aged rats, especially at the level of stem cell- and hypoxia signaling associated genes. Next, protein levels between young and aged post-stroke rats in periinfarct were compared using proteomic tools. Among others, AnxA3 was identified as differentially regulated protein, but the expression of AnxA3 has no significant changes in periinfarct between these two age groups at day 3 and 14. Different from periinfarct, a strong upregulation of AnxA3 at day 3 in young rats plus a strengthened increase of AnxA3 at day 14 in aged rats using immunohistochemical quantification indicated a delayed microglial accumulation in infarct core of aged rats, suggesting that quick activation of microglia in infarct core of young rats might be beneficial for recovery. Colocalization with established microglial marker demonstrated that AnxA3 as a novel microglial marker is implicated in the microglial responses to the focal cerebral ischemia. In addition, it was found that AnxA3 positive microglial cells incorporated more proliferating cell marker BrdU. Third, the expression, localization and function of several transport proteins were investigated in young rats following focal ischemic stroke. P-gp staining was detected in endothelial cells of desintegrated capillaries and by day 14 in newly generated blood vessels. There was no significant difference, however, in the Mdr1a mRNA amount in the periinfarct region compared to the contralateral site. For Bcrp, a significant mRNA up-regulation was observed from day 3 to 14. This up-regulation was followed by the protein as confirmed by quantitative immunohistochemistry. Oatp2, located in the vascular endothelium, was also up-regulated at day 14. For Mrp5, an up-regulation was observed in neurons in the periinfarct region (day 14). In conclusion, reduced transcriptional activity in the healthy, contralateral sensorimotor cortex in conjunction with an early up-regulation of proapoptotic genes and a decreased expression of genes with anti-oxidative capacity in the ipsilateral sensorimotor cortex of aged rats, plus the delayed up-regulation of AnxA3 positive microglial cells in infarct core may contribute to diminished recovery in post-stroke old rats. In addition, it was demonstrated in this study that after stroke the transport proteins were up-regulated with a maximum at day 14, a time point that coincides with behavioral recuperation. The study further suggests Bcrp as a pronounced marker for the regenerative process and a possible functional role of Mrp5 in surviving neurons. This study provided several evidences for the different responses of young and aged rats using a focal ischemic stroke model. Understanding the effect of age is crucial for the development of relevant therapeutic drugs.
Abstract: Ischemic stroke is an aging disease and causes high mortality or long-term disability. The reduced neurological recovery in aging is possibly associated with impairment of angiogenesis and non-specific enhancement of inflammatory reaction. To check this hypotheses, those events were compared within young and elder animals brain at day 14 following focal ischemic stroke. Moreover, it is of importance to investigate also the potential therapies of indomethacin for prolonging the therapeutic window using aged animal models. The focus of present study was on neurobiological and neurological differences between young and old rats modulated by indomethacin daily treatment beginning at four hours post-ischemic episode. The effectiveness of indomethacin treatment in young and elder rats was probed using immunohistochemistry, oligonucleotide microarray, Real Time PCR and neurological evaluation. Our results provide insight of several age-independent positive consequences of Cox non-specific inhibition by indomethacin including increased NeuN positive surviving neurons, reduced infarct volume and enhanced neuroprotective response of innate immune system evidenced by increased Iba1 and Anx3 immunoreactivities in moderately activated microglia in periinfarction. From gene level we observed in both age groups downregulation of Mdk and Cxcl1 chemokines, and Id3 transcription factor which might modulate inflammatory response and facilitate repair. Other several findings showed age-dependent drug effect. Indomethacin had reduced efficacy in aged ischemic brain. From a total of 34 genes differential regulated, we observed 43% in young and only 28% of genes in aged have tendency toward age-matched sham expression level. In aged rats, indomethacin is ineffective in inhibiting phagocytic activity which is probably due to no expression changes of several cytokines like Tnfá and Cxcl4. Also, at protein level we observed no change of lysosomal ED1 immunoreactivity under treatment. On the other hand aging is characterized by no expression changes of Plau, Timp1, Timp2 and Col18a1 after treatment resulting in no improvement of angiogenesis. In young rats, conversely, drug administration decreased phagocytic activity by downregulating several cytotoxic cytokines such as Tnfá and Cxcl4. Moreover, the observable decrease of proteases like MMP10, Plau and MMP inhibitor Timp2 employed in matrix remodeling together with downregulation of Col18a1 expression after treatment might sustain angiogenesis in young rat ischemic brain. Indomethacin improves the motor-sensory performance in ischemic stroke rats as compared with age-matched untreated animals. Young rats fully recovered while aged showed important recuperation but did not achieve the preoperative level. In view of all this, indomethacin treatment might be consider as adjuvant therapy following ischemic stroke, even if aging blunts the positive effect of indomethacin on altered angiogenic-related gene expression. Because of the small number of rats, the results obtained from this study show only a tendency to significance and that further studies with more animals need to be statistically validated before firmly conclusions can be drawn. KEY WORDS: indomethacin; aging; microglia; angiogenesis; gene expression; microarray; neurological recovery; reversible middle cerebral artery occlusion.
Pretransplant Tolerance Induction Reduces the Islet Mass Required to Reverse Diabetes in NOD Mice
(2007)
Islet transplantation can restore normoglycemia in diabetic patients. However, its application is limited by the high number of islets required to reverse diabetes. As the mass and potency of most human islet preparations are marginal, a large impact on the applicability of islet transplantation is expected from the implementation of strategies that improve engraftment of these islet preparations. The roles of adaptive immunity and immunosuppression on islet engraftment are not well studied. Therefore, the effects of currently used immunosuppression with antilymphocyte serum, tacrolimus and sirolimus on islet engraftment were separated from their impact on immunity and diabetes reversal rates were compared after islet allotransplantation in immunosuppressed and chimeric, non-immunosuppressed NOD mice. Both strategies prevented rejection of islet allografts and reduced the frequency of donor-specific, IFN-gamma-secreting T cells. However, in order to achieve stable diabetes reversal with a probability of about 80% after islet allotransplantation in diabetic NOD mice, a fourfold higher islet mass (400 islets) was required in immunosuppressed recipients, compared with non-immunosuppressed recipients made tolerant pretransplant by induction of mixed hematopoietic chimerism (100 islets). The failure of immunosuppressed mice to become normoglycemic after low-dose islet transplantation primarily resulted from the inhibitory effects of tacrolimus combined with sirolimus on islet engraftment and not from the inhibitory effects of this combination on islet graft function. These data suggest that immunotherapeutic strategies that control adaptive immunity without interfering with islet neovascularization or other processes critical to islet engraftment are likely to improve the success rate of marginal mass human islet allografts.
Dense sensor event-related brain potentials were measured in participants with spider phobia, high anxiety sensitive individuals and non-fearful controls during viewing of medical emergency, spider and standard emotional (pleasant, unpleasant, neutral) pictures. Compared to non-fearful controls spider phobia participants showed a significantly enlarged late positive potential (LPP) during the encoding of phobia-relevant pictures whereas high anxiety sensitive individuals showed a significantly greater Early Posterior Negativity (EPN) during the encoding of medical emergency pictures and a significantly greater Late Positive Potential (LPP) during the encoding of highly arousing unpleasant visual material. Moreover, within group comparisons of the spider phobia group revealed comparable LPP evoked by spider pictures and emotional (unpleasant and pleasant) picture contents indicating that at the level of early stimulus evaluation, the effects of selective attention seem to be related to emotional relevance of the stimulus rather than reflecting a fear-specific response.