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Synopsis
By interaction with electrons in ion storage devices (ion-cyclotron-resonance and radio-frequency traps) negatively charged clusters of gold and aluminum have been produced up to the 6th and 10th charge state, respectively. The production of these poly-anions opens exciting new possibilities to measure their lifetimes, to monitor their relaxation schemes after laser radiation, as well as to probe their Coulomb barriers.
Synopsis
C+60 has been proposed to be responsible for two of the diffuse interstellar bands (DIBs), the absorption features observed in the visible-to-near-infrared spectra of the interstellar medium. However, a confirmation requires laboratory gas-phase spectra, which are so far not available. We plan to develop a novel spectroscopy technique that will allow us to obtain the first gas-phase spectra of C+60, and that will be applicable to other complex organic molecules such as polycyclic aromatic hydrocarbons. The current status of the experimental setup, the ideas behind the measurement scheme and the preparatory work toward its implementation will be presented.
Synopsis
A network of ion sources is being developed on the 300-kV acceleration platform of the cryogenic storage ring (CSR) at the Max-Planck-Institut für Kernphysik. It consists of several types of sources like a metal ion sputtering source (MISS), a Penning source, a laser vaporization (LVAP) source, and an electrospray ionization (ESI) source to produce a large variety of ions which can be studied for photon and electron interaction in a ro-vibrationally cold environment. Furthermore a storage device such as a radiofrequency quadrupole (RFQ) is foreseen for internal state cooling and accumulation of rarely produced species.
Abstract
We have demonstrated efficient injection and trapping of a cold positron beam in a dipole magnetic field configuration. The intense 5 eV positron beam was provided by the NEutron induced POsitron source MUniCh facility at the Heinz Maier-Leibnitz Zentrum, and transported into the confinement region of the dipole field trap generated by a supported, permanent magnet with 0.6 T strength at the pole faces. We achieved transport into the region of field lines that do not intersect the outer wall using the
drift of the positron beam between a pair of tailored plates that created the electric field. We present evidence that up to 38% of the beam particles are able to reach the intended confinement region and make at least a 180° rotation around the magnet where they annihilate on an insertable target. When the target is removed and the
plate voltages are switched off, confinement of a small population persists for on the order of 1 ms. These results lend optimism to our larger aims to apply a magnetic dipole field configuration for trapping of both positrons and electrons in order to test predictions of the unique properties of a pair plasma.
Chronic Obstructive Pulmonary Disease and Diabetes Mellitus: A Systematic Review of the Literature
(2015)
The objective of this systematic review was to discuss our current understanding of the complex relationship between chronic obstructive pulmonary disease (COPD) and type-2 diabetes mellitus (T2DM). We performed a systematic search of the literature related to both COPD and diabetes using PubMed. Relevant data connecting both diseases were compiled and discussed. Recent evidence suggests that diabetes can worsen the progression and prognosis of COPD; this may result from the direct effects of hyperglycemia on lung physiology, inflammation or susceptibility to bacterial infection. Conversely, it has also been suggested that COPD increases the risk of developing T2DM as a consequence of inflammatory processes and/or therapeutic side effects related to the use of high-dose corticosteroids. In conclusion, although there is evidence to support a connection between COPD and diabetes, additional research is needed to better understand these relationships and their possible implications.
The current cross-national study investigates the potential buffering role of socio-motivational relationships for the association of achievement drive (AD) and test anxiety (TX) in secondary school students from Canada and Germany. One thousand and eighty-eight students (54% girls, Mage = 13.71, SD = 0.53, age span 12–15 years) from the state of Brandenburg and 389 students from Quebéc (55.9% girls, Mage = 13.43, SD = 0.82, age span 12–16 years) were asked about their socio-motivational relationships with their teachers and peers, their drive for achievement, and TX. Multigroup latent moderated structural equations were conducted to test for the moderator role of socio-motivational relationships that would buffer feelings of TX related to the drive for achievement. The analyses revealed the two-sided role socio-motivational relationships can have for students with different levels of AD; intensifying or mitigating feelings of TX. Thereby, the results of this study extend the buffering hypothesis by Cohen and Wills (1985). Cross-national differences between Canada and Germany were found concerning the studied moderators on the association of AD and TX: While for German students teacher–student relationships acted as moderator, for Canadian students student–student relationships and teachers acting as positive motivators displayed a moderator role.
The shared decline in cognitive abilities, sensory functions (e.g., vision and hearing), and physical health with increasing age is well documented with some research attributing this shared age-related decline to a single common cause (e.g., aging brain). We evaluate the extent to which the common cause hypothesis predicts associations between vision and physical health with social cognition abilities specifically face perception and face memory. Based on a sample of 443 adults (17–88 years old), we test a series of structural equation models, including Multiple Indicator Multiple Cause (MIMIC) models, and estimate the extent to which vision and self-reported physical health are related to face perception and face memory through a common factor, before and after controlling for their fluid cognitive component and the linear effects of age. Results suggest significant shared variance amongst these constructs, with a common factor explaining some, but not all, of the shared age-related variance. Also, we found that the relations of face perception, but not face memory, with vision and physical health could be completely explained by fluid cognition. Overall, results suggest that a single common cause explains most, but not all age-related shared variance with domain specific aging mechanisms evident.
Invasion of the bacterial pathogen Listeria monocytogenes into human host cells requires specialized surface molecules for attachment and induction of phagocytosis. However, efficient invasion is also dependent on factors with house-keeping functions, such as SecA2-dependent secretion of autolysins for post-divisional segregation of daughter cells. Mutations in this pathway prevent degradation of peptidoglycan cross-walls, so that long cell chains are formed that cannot be phagocytosed. The extreme chaining of such mutants manifests as rough colony phenotype. One rough clone was isolated from a transposon library with a transposon insertion in the uncharacterized lmo0720 gene (lftS) together with a spontaneous point mutation in the secA2 gene. We separated both mutations and demonstrated that this point mutation in the intramolecular regulator 2 domain of SecA2 was sufficient to inactivate the protein. In contrast, lftS deletion did not cause a ΔsecA2-like phenotype. lftS is located in an operon with lftR (lmo0719), encoding a PadR-like transcriptional regulator, and lftR deletion affected growth, invasion and day-light dependent coordination of swarming. Inactivation of lftS partially suppressed these phenotypes, suggesting a functional relationship between LftR and LftS. However, the invasion defect of the ΔlftR mutant was only marginally suppressed by lftS removal. LftR regulates expression of the lmo0979–0980 (lieAB) operon, encoding a putative multidrug resistance transporter and lieAB transcription was strongly upregulated in the absence of LftR. Deletion of lieAB in the ΔlftR background restores wild type-like invasion levels. Hence, we conclude that tight transcriptional repression of the lieAB operon is essential for efficient listerial host cell invasion.
Children as young as 3 years can remember an object’s location within an arrangement and can retrieve it from a novel viewpoint (Nardini et al., 2006). However, this ability is impaired if the arrangement is rotated to compensate for the novel viewpoint, or, if the arrangement is rotated and children stand still. There are two dominant explanations for this phenomenon: self-motion induces an automatic spatial updating process which is beneficial if children move around the arrangement, but misleading if the children’s movement is matched by the arrangement and not activated if children stand still and only the arrangement is moved (see spatial updating; Simons and Wang, 1998). Another explanation concerns reference frames: spatial representations might depend on peripheral spatial relations concerning the surrounding room instead on proximal relations within the arrangement, even if these proximal relations are sufficient or more informative. To evaluate these possibilities, we rotated children (N = 120) aged between 3 and 6 years with an occluded arrangement. When the arrangement was in misalignment to the surrounding room, 3- and 4-year-olds’ spatial memory was impaired and 5-year-olds’ was lightly impaired suggesting that they relied on peripheral references of the surrounding room for retrieval. In contrast, 6-years-olds’ spatial representation seemed robust against misalignment indicating a successful integration of spatial representations.
Certain pathogenic bacteria adopt an intracellular lifestyle and proliferate in eukaryotic host cells. The intracellular niche protects the bacteria from cellular and humoral components of the mammalian immune system, and at the same time, allows the bacteria to gain access to otherwise restricted nutrient sources. Yet, intracellular protection and access to nutrients comes with a price, i.e., the bacteria need to overcome cell-autonomous defense mechanisms, such as the bactericidal endocytic pathway. While a few bacteria rupture the early phagosome and escape into the host cytoplasm, most intracellular pathogens form a distinct, degradation-resistant and replication-permissive membranous compartment. Intracellular bacteria that form unique pathogen vacuoles include Legionella, Mycobacterium, Chlamydia, Simkania, and Salmonella species. In order to understand the formation of these pathogen niches on a global scale and in a comprehensive and quantitative manner, an inventory of compartment-associated host factors is required. To this end, the intact pathogen compartments need to be isolated, purified and biochemically characterized. Here, we review recent progress on the isolation and purification of pathogen-modified vacuoles and membranes, as well as their proteomic characterization by mass spectrometry and different validation approaches. These studies provide the basis for further investigations on the specific mechanisms of pathogen-driven compartment formation.
Cervical Artery Dissection in Young Adults in the Stroke in Young Fabry Patients (sifap1) Study
(2015)
Background: Patients with carotid artery dissection (CAD) have been reported to have different vascular risk factor profiles and clinical outcomes to those with vertebral artery dissection (VAD). However, there are limited data from recent, large international studies comparing risk factors and clinical features in patients with cervical artery dissection (CeAD) with other TIA or ischemic stroke (IS) patients of similar age and sex. Methods: We analysed demographic, clinical and risk factor profiles in TIA and IS patients ≤55 years of age with and without CeAD in the large European, multi-centre, Stroke In young FAbry Patients 1 (sifap1) study. Patients were further categorised according to age (younger: 18-44 years; middle-aged: 45-55 years), sex, and site of dissection. Results: Data on the presence of dissection were available in 4,208 TIA and IS patients of whom 439 (10.4%) had CeAD: 196 (50.1%) had CAD, 195 (49.9%) had VAD, and 48 had multiple artery dissections or no information regarding the dissected artery. The prevalence of CAD was higher in women than in men (5.9 vs. 3.8%, p < 0.01), whereas the prevalence of VAD was similar in women and men (4.6 vs. 4.7%, n.s.). Patients with VAD were younger than patients with CAD (median = 41 years (IQR = 35-47 years) versus median = 45 years (IQR = 39-49 years); p < 0.01). At stroke onset, about twice as many patients with either CAD (54.0 vs. 23.1%, p < 0.001) or VAD (63.4 vs. 36.6%, p < 0.001) had headache than patients without CeAD and stroke in the anterior or posterior circulation, respectively. Compared to patients without CeAD, hypertension, concomitant cardiovascular diseases and a patent foramen ovale were significantly less prevalent in both CAD and VAD patients, whereas tobacco smoking, physical inactivity, obesity and a family history of cerebrovascular diseases were found less frequently in CAD patients, but not in VAD patients. A history of migraine was observed at a similar frequency in patients with CAD (31%), VAD (27.8%) and in those without CeAD (25.8%). Conclusions: We identified clinical features and risk factor profiles that are specific to young patients with CeAD, and to subgroups with either CAD or VAD compared to patients without CeAD. Therefore, our data support the concept that certain vascular risk factors differentially affect the risk of CAD and VAD.
Background: Pancreatic ductal adenocarcinoma (PDAC) is characterised by an extremely poor overall survival (OS) compared to other solid tumours. As the incidence of the disease is rising and the treatment options are limited, PDAC is projected to be the 2nd leading cause of cancer-related deaths in the United States by 2030. A majority of patients are not eligible for curative resection at the time of diagnosis, and those that are resected will often relapse within the first few years after surgery. Summary: Until recently, the nucleoside analogue gemcitabine has been the standard of care for patients with non-resectable PDAC with only marginal effects on OS. In 2011, the gemcitabine-free FOLFIRINOX regimen (folinic acid, fluorouracil, irinotecan and oxaliplatin) showed a significant survival advantage for patients with metastatic PDAC in a phase III trial. In 2013, the Metastatic Pancreatic Adenocarcinoma Trial phase III trial with nano-formulated albumin-bound paclitaxel (nab-paclitaxel) in combination with gemcitabine also resulted in a significant survival extension compared to gemcitabine monotherapy. However, both intensified therapy regimens show a broad spectrum of side effects and patients need to be carefully selected for the most appropriate protocol. Key Message: In this study, recent advances in the chemotherapeutic options available to treat metastatic PDAC and their implications for today's treatment choices are reviewed.
Background: There is only limited data on the potential association between thyroid dysfunction and peripheral arterial disease (PAD). Objective: The aim of our study was to investigate the potential association of thyroid function, as defined by serum concentrations of the clinically used primary thyroid function marker thyrotropin [i.e. thyroid-stimulating hormone (TSH)] and 3,5-diiodothyronine (3,5-T<sub>2</sub>), with the ankle-brachial index (ABI) as a marker of PAD. Methods: We used data from 5,818 individuals from three cross-sectional population-based studies conducted in Northeast (SHIP-2 and SHIP-TREND) and Central Germany (CARLA). Measurement of serum TSH concentrations was conducted in one central laboratory for all three studies. In a randomly selected subpopulation of 750 individuals of SHIP-TREND, serum 3,5-T<sub>2</sub> concentrations were measured with a recently developed immunoassay. ABI was measured either by a hand-held Doppler ultrasound using the Huntleigh Dopplex D900 or palpatorily by the OMRON HEM-705CP device. Results: Serum TSH concentrations were not significantly associated with ABI values in any of the three studies. Likewise, groups of individuals with a TSH <0.3 mIU/l or with a TSH ≥3.0 mIU/l had no significantly different ABI values in comparison with individuals with a TSH in the reference range. Analyses regarding TSH within the reference range or serum 3,5-T<sub>2</sub> concentrations did not reveal consistent significant associations with the ABI. No sex-specific associations were detected. Conclusions: The results of our study do not substantiate evidence for an association between thyroid function and PAD, but further studies are needed to investigate the associations of overt forms of thyroid dysfunction with PAD.
Context: 3,5-Diiodo-<smlcap>L</smlcap>-thyronine (3,5-T<sub>2</sub>) is a thyroid hormone metabolite which exhibited versatile effects in rodent models, including the prevention of insulin resistance or hepatic steatosis typically forced by a high-fat diet. With respect to euthyroid humans, we recently observed a putative link between serum 3,5-T<sub>2</sub> and glucose but not lipid metabolism. Objective: The aim of the present study was to widely screen the urine metabolome for associations with serum 3,5-T<sub>2</sub> concentrations in healthy individuals. Study Design and Methods: Urine metabolites of 715 euthyroid participants of the population-based Study of Health in Pomerania (SHIP-TREND) were analyzed by <sup>1</sup>H-NMR spectroscopy. Multinomial logistic and multivariate linear regression models were used to detect associations between urine metabolites and serum 3,5-T<sub>2</sub> concentrations. Results: Serum 3,5-T<sub>2</sub> concentrations were positively associated with urinary levels of trigonelline, pyroglutamate, acetone and hippurate. In detail, the odds for intermediate or suppressed serum 3,5-T<sub>2</sub> concentrations doubled owing to a 1-standard deviation (SD) decrease in urine trigonelline levels, or increased by 29-50% in relation to a 1-SD decrease in urine pyroglutamate, acetone and hippurate levels. Conclusion: Our findings in humans confirmed the metabolic effects of circulating 3,5-T<sub>2</sub> on glucose and lipid metabolism, oxidative stress and enhanced drug metabolism as postulated before based on interventional pharmacological studies in rodents. Of note, 3,5-T<sub>2</sub> exhibited a unique urinary metabolic profile distinct from previously published results for the classical thyroid hormones.
Differences in Mouse Hepatic Thyroid Hormone Transporter Expression with Age and Hyperthyroidism
(2015)
Background: Clinical features of thyroid dysfunction vary with age, and an oligosymptomatic presentation of hyperthyroidism is frequently observed in the elderly. This suggests age modulation of thyroid hormone (TH) action, which may occur, for example, by alterations in TH production, metabolism and/or TH action in target organs. Objectives: In this paper, we address possible changes in TH transporter expression in liver tissues as a mechanism of age-dependent variation in TH action. Methods: Chronic hyperthyroidism was induced in 4- and 20-month-old C57BL6/NTac male mice (n = 8-10) by intraperitoneal injections of 1 µg/g body weight <smlcap>L</smlcap>-thyroxine (T<sub>4</sub>) every 48 h over 7 weeks. Control animals were injected with PBS. Total RNA was isolated from liver samples for analysis of the TH transporter and TH-responsive gene expression. TH concentrations were determined in mice sera. Results: Baseline serum free T<sub>4</sub> (fT<sub>4</sub>) concentrations were significantly higher in euthyroid young compared to old mice. T<sub>4</sub> treatment increased total T<sub>4</sub>, fT<sub>4</sub> and free triiodothyronine to comparable concentrations in young and old mice. In the euthyroid state, TH transporter expression was significantly higher in old than in young mice, except for Mct8 and Oatp1a1 expression levels. Hyperthyroidism resulted in upregulation of Mct10, Lat1 and Lat2 in liver tissue, while Oatp1a1, Oatp1b2 and Oatp1a4 expression was downregulated. This effect was preserved in old animals. Conclusion: Here, we show age-dependent differences in TH transporter mRNA expression in the euthyroid and hyperthyroid state of mice focusing on the liver as a classical TH target organ.
Background: Hyperthyroidism is known to induce a hypercoagulable state. It stimulates plasma levels of procoagulative factors and reduces fibrinolytic activity. So far most of the data have been derived from patients with endogenous hyperthyroidism with a wide variability in the underlying pathogenesis and severity of the disease. Objectives: In this study we experimentally induced thyrotoxicosis in healthy volunteers to explore the effects of thyroxine excess on the plasma proteome. Using a shotgun proteomics approach, the abundance of plasma proteins was monitored before, during and after thyrotoxicosis. Methods: Sixteen healthy male subjects were sampled at baseline, 4 and 8 weeks under 250 µg/day thyroxine p.o., as well as 4 and 8 weeks after stopping the application. Plasma proteins were analyzed after depletion of 6 high-abundance proteins (MARS6) by LC-ESI-MS/MS mass spectrometry. Mass spectrometric raw data were processed using a label-free, intensity-based workflow. Subsequently, the linear dependence between protein abundances and fT<sub>4</sub> levels were calculated using a Pearson correlation. Results: All subjects developed biochemical thyrotoxicosis, and this effect was reversed within the first 4 weeks of follow-up. None of the volunteers noticed any subjective symptoms. Levels of 10 proteins involved in the coagulation cascade specifically correlated with fT<sub>4</sub>, supporting an influence of thyroid hormone levels on blood coagulation even at nonpathological levels. Conclusions: The results suggest that experimental thyrotoxicosis exerts selective and specific thyroxine-induced effects on coagulation markers. Our study design allows assessment of thyroid hormone effects on plasma protein levels without secondary effects of other diseases or therapies.
Clinically Relevant Depressive Symptoms in Young Stroke Patients - Results of the sifap1 Study
(2015)
Background: Although post-stroke depression is widely recognized, less is known about depressive symptoms in the acute stage of stroke and especially in young stroke patients. We thus investigated depressive symptoms and their determinants in such a cohort. Methods: The Stroke in Young Fabry Patients study (sifap1) prospectively recruited a large multinational European cohort (n = 5,023) of patients with a cerebrovascular event aged 18-55. For assessing clinically relevant depressive symptoms (CRDS, defined by a BDI-score ≥18) the self-reporting Beck Depression Inventory (BDI) was obtained on inclusion in the study. Associations with baseline parameters, stroke severity (National Institutes of Health Stroke Scale, NIHSS), and brain MRI findings were analyzed. Results: From the 2007 patients with BDI documentation, 202 (10.1%) had CRDS. CRDS were observed more frequently in women (12.6 vs. 8.2% in men, p < 0.001). Patients with CRDS more often had arterial hypertension, diabetes mellitus, and hyperlipidemia than patients without CRDS (hypertension: 58.0 vs. 47.1%, p = 0.017; diabetes mellitus: 17.9 vs. 8.9%, p < 0.001; hyperlipidemia: 40.5 vs. 32.3%, p = 0.012). In the subgroup of patients with ischemic stroke or TIA (n = 1,832) no significant associations between CRDS and cerebral MRI findings such as the presence of acute infarcts (68.1 vs. 65.8%, p = 0.666), old infarctions (63.4 vs. 62.1%, p = 0.725) or white matter hyper-intensities (51.6 vs. 53.7%, p = 0.520) were found. Conclusion: Depressive symptoms were present in 10.1% of young stroke patients in the acute phase, and were related to risk factors but not to imaging findings.
Background: A telemedicine care concept based on telephone contacts and individualized text messages was developed for patients with mental disorders to continue treatment after therapy in a psychiatric day hospital. The primary objective of this study was to evaluate the effectiveness of the telemedicine interventions. Methods: The study had a 3-armed, randomized design with 2 intervention arms (intervention 1: telephone contacts; intervention 2: telephone contacts and short text messages; both took place over a period of 6 months and in addition to usual care), and a control group with usual care. Primary outcomes were 18-item Brief Symptom Inventory (BSI-18) scores for anxiety, depression and somatization. All participants were recruited from psychiatric day hospitals. The study was registered in the German Clinical Trials Register (DRKS00000662). Results: 113 participants were analyzed 6 months after starting the intervention. The average BSI-18 anxiety score after 6 months was -2.04 points lower in intervention group 2 than in the control group (p value: 0.042). The difference in BSI depression score between these two groups was marginally significant (p value: 0.1), with an average treatment effect of -1.73. In an exploratory sensitivity analysis restricted to the 75% of patients with the highest symptom scores at baseline, intervention group 1 yielded a significant effect for anxiety and depression compared to the control group (p = 0.036 and 0.046, respectively). Conclusions: Telemedicine provides a novel option in psychiatric ambulatory care with statistically significant effects on anxiety. A positive tendency was observed for depression, especially in cases with higher symptom load at baseline.
Background: Robotic-assisted laparoscopy (RAL) is being widely accepted in the field of urology as a replacement for conventional laparoscopy (CL). Nevertheless, the process of its integration in clinical routines has been rather spontaneous. Objective: To determine the prevalence of robotic systems (RS) in urological clinics in Germany, Austria and Switzerland, the acceptance of RAL among urologists as a replacement for CL and its current use for 25 different urological indications. Materials and Methods: To elucidate the practice patterns of RAL, a survey at hospitals in Germany, Austria and Switzerland was conducted. All surgically active urology departments in Germany (303), Austria (37) and Switzerland (84) received a questionnaire with questions related to the one-year period prior to the survey. Results: The response rate was 63%. Among the participants, 43% were universities, 45% were tertiary care centres, and 8% were secondary care hospitals. A total of 60 RS (Germany 35, Austria 8, Switzerland 17) were available, and the majority (68%) were operated under public ownership. The perception of RAL and the anticipated superiority of RAL significantly differed between robotic and non-robotic surgeons. For only two urologic indications were more than 50% of the procedures performed using RAL: pyeloplasty (58%) and transperitoneal radical prostatectomy (75%). On average, 35% of robotic surgeons and only 14% of non-robotic surgeons anticipated RAL superiority in some of the 25 indications. Conclusions: This survey provides a detailed insight into RAL implementation in Germany, Austria and Switzerland. RAL is currently limited to a few urological indications with a small number of high-volume robotic centres. These results might suggest that a saturation of clinics using RS has been achieved but that the existing robotic capacities are being utilized ineffectively. The possible reasons for this finding are discussed, and certain strategies to solve these problems are offered.
‘Chameleonic' Serological Findings Leading to Life-Threatening Hemolytic Transfusion Reactions
(2015)
Background: The phenomena of co-incidence of transfusion-induced allo- and autoantibodies, blockage and/or loss of red blood cell (RBC) antigens are conspicuous and may result in confusion and misdiagnosis. Case Report: A 67-year-old female was transferred to the intensive care unit due to hemolysis which developed 2 days following transfusion of three Rh(D)-negative RBC units in the presence of strongly reactive autoantibodies. Standard serological testing and genotyping were performed. Upon arrival, the patient was typed as Ccddee. Her hemolysis was decompensated, and an immediate blood transfusion was required. In addition, direct and indirect antiglobulin tests (DAT and IAT) as well as the eluate were strongly positive. Emergency transfusion of Rh(D)-negative RBCs resulted in increased hemolysis and renal failure. An exhaustive testing revealed anti-D, anti-c, CCddee phenotype and CCD.ee genotype. Three units of cryopreserved CCddee RBCs were transfused, and the patient's condition immediately improved. The discrepancy between Rh-D phenotyping and genotyping was likely caused by masking of the D-epitopes by the autoantibodies. In fact, further enquiry revealed that the patient had been phenotyped as Rh(D)-positive 6 months ago and had been transfused at that time following hip surgery. Conclusion: The phenomena of transfusion-induced autoantibodies, masked alloantibodies, antigen blockage and/or loss are rare but important features which should be considered in patients presenting with autoimmune hemolytic anemia and/or hemolytic transfusion reactions.
Background: With the use of modern cross-sectional abdominal imaging modalities, an increasing number of cystic pancreatic lesions are identified incidentally. Although there is no pathological diagnosis available in most cases, it is believed that the majority of these lesions display small branch-duct intraductal papillary mucinous neoplasms (BD-IPMNs) of the pancreas. Even though a number of large clinical series have been published, many uncertainties remain with regard to this entity of mucinous cystic neoplasms. Methods: Systematic literature review. Results: Main-duct (MD) and mixed-type IPMNs harbor a high risk of malignant transformation. It is conceivable that most IPMNs with involvement of the main duct tend to progress to invasive carcinoma over time. Thus, formal oncologic resection is the treatment of choice in surgically fit patients. In contrast, the data regarding BD-IPMN remain equivocal, resulting in conflicting concepts. To date, it is not clear whether and which BD-IPMNs progress to carcinoma and how long this progression takes. Conclusion: While patients with MD-IPMNs should undergo surgical resection if comorbidities and life expectancy permit this, the management of small BD-IPMNs remains controversial. Population-based studies with long-term follow-up are needed to define which cohort of patients can be observed safely without immediate resection.
Background: Intraductal papillary mucinous neoplasms (IPMNs) display diverse macroscopic, histological, and immunohistochemical characteristics with typical morphological appearance in magnetic resonance imaging. Depending on those, IPMNs may show progression into invasive carcinomas with variable frequency. Overall, IPMN-associated invasive carcinomas are found in about 30% of all IPMNs, revealing phenotpyes comparable with conventional ductal adenocarcinomas or mucinous (colloid) carcinomas of the pancreas. In Sendai-negative side-branch IPMNs, however, the annual risk of the development of invasive cancer is 2%; thus, risk stratification with regard to imaging and preoperative biomarkers and cytology is mandatory. Methods and Results: The present study addresses the radiological and interventional preoperative measures including histological features to determine the risk of malignancy and the prognosis of IPMNs. Conclusion: While preoperative imaging largely relies on the detection of macroscopic features of IPMNs, which are associated with a divergent risk of malignant behavior, in resected specimens the determination of the grade of dysplasia and the detection of an invasive component are the most important features to estimate the prognosis of IPMNs.
The Clinical and Socio-Economic Relevance of Increased IPMN Detection Rates and Management Choices
(2015)
Background: Increased usage of computed tomography and magnetic resonance imaging has led to a large increase in identified pancreatic cysts of up to 25% in population-based studies. The clinical and economic relevance of identifying so many cystic lesions has not been established. Compared to other organs such as liver or kidney, dysontogenetic pancreatic cysts are rare. Pancreatic cysts comprise a variety of benign, premalignant or malignant lesions; however, precise diagnosis before resection has an accuracy of only 80%. The focus of recent research was the malignant potential of intraductal papillary mucinous neoplasms (IPMN) with the aim of establishing clinical pathways addressing risk of malignancy, age and comorbidity, treatment-related morbidity and mortality as well as cost-effectiveness of treatment and surveillance. The focus of this review is to analyze the clinical and socio-economic relevance as well as the cost-benefit relation for IPMNs. Methods: For analysis, the following MESH terms were used to identify original articles, reviews, and guidelines in PubMed: (‘intraductal papillary mucinous neoplasm' OR ‘pancreatic cysts') and (incidence OR relevance OR socio-economic OR economic OR cost-effectiveness OR cost-benefit). The retrieved publications were reviewed with a focus on clinical and socio-economic relevance in relation to the increasing incidence of IPMN. Results: Addressing the increasing prevalence of pancreatic cystic lesions, recent consensus guidelines suggested criteria for risk stratification according to ‘worrisome features' and ‘high-risk stigmata'. Recent prospective cohort studies evaluated whether these can be applied in clinical practice. Evaluation of three different clinical scenarios with regard to costs and quality-adjusted life years suggested a better effectiveness of surveillance after initial risk stratification by endoscopic ultrasound-guided fine-needle aspiration with cyst fluid analysis compared with immediate resection or follow-up without further intervention. Of interest, the ‘immediate surgery' strategy was lowest for cost-effectiveness. Conclusions: The increasing incidence of identified pancreatic cysts requires an improved strategy for non-invasive risk stratification based on advanced imaging strategies. In light of a malignancy risk of 2% for branch-duct IPMN, the socio-economic necessity of a balance between surveillance and resection has to be agreed on.
Next Generation Sequencing (NGS)-technologies developed very fast in recent years and is used widely in current research areas. The aim of this study was to use NGS (i) for the identification of pathogens in outbreaks and (ii) for the identification of virulence-relevant sequencepolymorphisms when comparing whole genome sequences. Therefore, a previous developed workflow was used to identify a new virus of the family Bornaviridae. The generation of whole genome sequences elucidated the molecular epidemiological connection of infection of variegated squirrels (Sciurus variegatoides) and three human cases of fatal encephalitis. By generating the whole genome sequence of a Porcine Epidemic Diarrhea Virus (PEDV) in Germany it was possible to find difference compared to circulating high virulent strains in the USA. This led to potential virulence marker to distinguish strain in the USA and Germany. Connections between sequence variation and virulence were further investigated for the bovine viral diarrhea virus 2c (BVDV-2c), cowpox viruses (CPXV) and classical swine fever virus (CSFV). Here, for a highly virulent BVDV-2c strain a mixture of different genome structure variants could be found. The majority of these genomes harbors a duplication within the p7/NS2 coding region and might cause a high virulence. For CPXV virus isolated of different hosts were analyzed and a correlation between genome sequence and the A-type inclusion body phenotype could be found. Furthermore, several deletion/insertion events were detected which might influence the virulence of these strains. Finally, the virus population of CSFV strains in pigs was characterized. However, the population of the inoculum as well as of acute-lethal and chronically infected animals gave no indication that the virus itself causes the different types of disease outcome. In conclusion, this thesis shows the great potential of NGS for virus identification and characterization. Furthermore, it makes the identification of potential virulence marker possible which subsequently can be analyzed by reverse genetics.
The present work examines the decision-making process of clinicians and managers in terms of pricing. This dissertation attempts to make often unconscious processes in both the clinical and economic areas more transparent. Due to this increase in transparency and an illustration of the overall decision-making process, a prioritization of the decision-drivers is enabled. Similarily, overall decision-making on stakeholder level is improved. The findings of this work are based on a dual sample: The paper primarily combines qualitative expert discussions in the clinical field with a quantitative manager survey. Therefore, the advancement of knowledge is specifically furthered in terms of pricing decision-making, as well as specific economic and thematic aspects. These form the basis for clinical/managerial decision-making. Since such specific understanding enables better acting and reacting during the negotiation processs, clients of medical device companies (eg clinics) could additionally benefit from improved understanding. Although the focus of this work rests on the clinical area, this paper also examines how companies of the medical technology industry could offer more economic medical products by means of using the instrument of pricing. Based on an interdisciplinary approach and a collection of primary data, this work also discusses a solution approach for corporate/entrepreneurial inefficiencies discovered in this paper. A final conceptual model illustrates different value allocations from both stakeholder groups (clinicians vs. managers). With regard to the research focus, the conceptual model is understood as a holistic solution for recognizing and correcting business gaps in the areas of knowledge transfer, innovation, knowledge of markets and standardization of processes.
Today the process of improving technology and software allows to create, save and explore massive data sets in little time. "Big Data" are everywhere such as in social networks, meteorology, customers’ behaviour – and in biology. The Omics research field, standing for the organism-wide data exploration and analysis, is an example of biological research that has to deal with "Big Data" challenges. Possible challenges are for instance effcient storage and cataloguing of the data sets and finally the qualitative analysis and exploration of the information. In the last decade largescale genome-wide association studies and high-throughput techniques became more effcient, more profitable and less expensive. As a consequence of this rapid development, it is easier to gather massive amounts of genomic and proteomic data. However, these data need to get evaluated, analysed and explored. Typical questions that arise in this context include: which genes are active under sever al physical states, which proteins and metabolites are available, which organisms or cell types are similar or different in their enzymes’or genes’ behaviour. For this reason and because a scientist of any "Big Data" research field wants to see the data, there is an increasing need of clear, intuitively understandable and recognizable visualization to explore the data and confirm thesis. One way to get an overview of the data sets is to cluster it. Taxonomic trees and functional classification schemes are hierarchical structures used by biologists to organize the available biological knowledge in a systematic and computer readable way (such as KEGG, GO and FUNCAT). For example, proteins and genes could be clustered according to their function in an organism. These hierarchies tend to be rather complex, and many comprise thousands of biological entities. One approach for a space-filling visualization of these hierarchical structured data sets is a treemap. Existing algorithms for producing treemaps struggle with large data sets and have several other problems. This thesis addresses some of these problems and is structured as follows. After a short review of the basic concepts from graph theory some commonly used types of treemaps and a classification of treemaps according to information visualization aspects is presented in the first chapter of this thesis. The second chapter of this thesis provides several methods to improve treemap constructions. In certain applications the researcher wants to know, how the entities in a hierarchical structure are related to each other (such as enzymes in a metabolic pathway). Therefore in the 3 third chapter of this thesis, the focus is on the construction of a suitable layout overlaying an existing treemap. This gives rise to optimization problems on geometric graphs. In addition, from a practical point of view, options for enhancing the display of the computed layout are explored to help the user perform typical tasks in this context more effciently. One important aspect of the problems on geometric graphs considered in the third chapter of the thesis is that crossings of edges in a network structure are to be minimized while certain other properties such as connectedness are maintained. Motivated by this, in the fourth chapter of this thesis, related combinatorial and computational problems are explored from a more theoretical point of view. In particular some light is shed on properties of crossing-free spanning trees in geometric graphs.
A method employing labeling of cell-surface proteins with Sulfo-NHS-SS-biotin and subsequent affinity enrichment with NeutrAvidin has been optimized in order to make cell-surface proteins from Gram-positive bacteria reliably accessible to quantitative mass spectrometric analyses. The optimized biotinylation approach was applied for analysis of the lipoproteome from S. aureus and S. pneumoniae on a global scale and the influence of mutations in the lipoprotein maturation pathway on the cell-surface and exoproteomes of both species was investigated. The biotinylation approach was integrated into a proteomic workflow that employs metabolic labeling with heavy nitrogen for relative protein quantification to investigate proteomic differences between S. aureus in a biofilm model and its free-floating, planktonic counterparts.
Although the Pleistocene deposits exposed in the steep coastal cliffs of Mecklenburg-Vorpommern have been studied for more than a century, the depositional conditions of many lithostratigraphic units remain unclear. There is, in particular, a question whether the individual tills (locally more than 9 successive till units) are mainly subglacial deposits or resedimented (mass flows) in origin (at least in part). The Pleistocene deposits preserve information concerning the former glacial depositional processes. Detailed micromorphological analysis of these deposits can provide key information regarding these processes and thereby aid in the reconstruction of former glacial environments. The island of Rügen is located on the southwestern Baltic Sea coast and was situated in the marginal zone of the Scandinavian Ice Sheet during the last glacial period (Weichselian). Therefore, the region is considered as an ideal area for reconstructing the complex fluctuations in the position of the margin of this ice sheet as it expanded across the Baltic Sea and into northern Germany. Successive glacial advances and retreats of the ice sheet can be reconstructed by specific glacial sedimentation processes and flow-direction criteria derived from a variety of glacial deposits. The investigation area is located near Sassnitz on Rügen, where an imbricated and folded Weichselian succession disconformably overlies Maastrichtian chalk bedrock. The individual till units were sampled for micromorphological analyses to identify the former depositional conditions. Detailed description of the sedimentology and variation in facies, the description of macroscale deformation structures provides the context for the detailed micromorphology study. The three dimensional analysis of the microfabrics is based on the microstructural mapping methodology which enables the identification and interpretation of polyphase deformation within subglacial sediments.
Telemedicine at the Emergency Site – Evaluated by emergency team members in simulated scenarios
(2015)
The hypothesis of this study states that emergency medicine can benefit from telemedicine, whenever paramedics at a remote emergency site request consultation or mentoring by a distant emergency doctor. The hypothesis was semi-qualitatively evaluated in accordance with the protocol of the EU project in the setting of a medical simulation centre. Paramedics encountered simulated standardized emergency case scenarios, connected for teleconsultation and telementoring with emergency doctors by video and audio link through a newly developed real-time HD-video system called LiveCity camera. Paramedics and emergency doctors regarded the simulated scenarios as realistic and relevant and took the simulation seriously. Thus,the following conclusions can be drawn: 1.) Emergency team members encounter situations at the emergency site, in which they would like to get help by a more experienced colleague, especially help with diagnostics and treatment. 2.) The telemedical contact to an emergency doctor makes paramedics feel confirmed in their work, more secure, even in legal aspects. Paramedics do not feel controlled by telemedicine or like a puppet on a string. Their relationship to the patient is not mainly deranged or interfered by the doctor and their course of action is not mainly disrupted. The tele-emergency doctors do not feel like puppet masters and continue feeling as doctors and do not perceive themselves as interferer within the emergency team. 3.) Emergency team members call for a telemedical system providing transmission of vital signs as well as audio- and video-connection. 4.) The LiveCity camera is an effective telemedical tool. The audio quality is good and the orientation on the screen is easy. Paramedics state, that filming the emergency site is easy, does not restrict the field of vision and paramedics can communicate the emergency doctors everything they want to show and tell. Thus the emergency doctors get additional information. While the LiveCity camera is mostly perceived as not too heavy, the LiveCity camera is not easy to operate, very failure-prone and can derange the communication among team members at the emergency site. Nevertheless, the LiveCity camera is not perceived as an additional burden. 5.) Telemedicine is predominantly and largely appreciated by the members of the emergency team. Connecting the tele-emergency doctor to the remote paramedics leads to a perceived faster start of the therapy and is considered as helpful, improving the situation and the quality of patient care. The adherence to medical guidelines and therefore the quality increased, when the paramedics were connected to an emergency doctor through the telemedicine connection. In general, the quality of diagnostics, the correctness of diagnosis and the quality of therapy were rated higher. The majority of paramedics would call a tele-emergency doctor in cases, they wouldn´t normally activate medical support. The emergency team members largely agree in perceiving the tele-emergency doctor system as useful, and they can imagine, working in a tele-emergency system. As a conclusion, the general hypothesis of this study is mainly and in many items supported: Emergency medicine benefits from telemedical support via video- and audio link as studied here with a newly developed real-time HD-video system called LiveCity camera, whenever paramedics at a remote emergency site request consultation or mentoring by a distant emergency doctor.
Staphylococcus aureus can be a harmless colonizer of the human body, which colonizes about 20-30% of the population. If S. aureus overcomes the outer physical barrier of the body, comprised of the skin and mucous surfaces, it can also cause severe diseases such as endocarditis, pneumonia, or sepsis. S. aureus possesses a variety of secreted and surface bound virulence factors to mediate attachment and invasion into the host, to disseminate an infection and to modulate and evade the immune system. But not only the huge amount of virulence factors turn S. aureus into a dangerous human pathogen, also its resistances to a broad spectrum of commonly used antibiotics make infections hard to treat. During the last years it became apparent that S. aureus can be internalized by as well as replicate and persist in professional and non-professional phagocytic cells. It is suggested that the intracellular compartment protects S. aureus from antibiotic treatment and the immune system. To accomplish the adaptation to the intracellular compartment, S. aureus needs to regulate its gene expression by regulatory systems. One of these regulators is the alternative sigma factor SigB, which directly and indirectly regulates the expression of about 200 genes in vitro. However, the stimuli leading to the activation of SigB in S. aureus are barely known and also its role during an infection varies, depending on the S. aureus strain and infection model used. Therefore, the importance of SigB during the early adaption of S. aureus to the intracellular environment should be elucidated using a cell culture infection model. First, the existing cell culture infection workflow had to be modified to improve the data analysis and to increase the yield of identified proteins to comparatively monitor the adaption reaction of S. aureus HG001 and its isogenic ΔsigB mutant to the intracellular milieu of S9 human bronchial epithelial cells. The proteome analysis in conjunction with RT-qPCR analysis of the wild type and the ΔsigB mutant revealed a fast and transient activation of SigB directly after internalization. Quantitative analysis of the intracellular bacterial titer demonstrated a requirement of SigB for intracellular replication. Differences in the proteome composition of the ΔsigB mutant in comparison to the wild type after internalization reflected the different growth rates, resistance to antibiotics and toxic compounds, adaptation to oxidative stress, and protein quality control mechanisms. The accessory gene regulator (Agr) is like SigB also a global regulator of gene expression in S. aureus. To elucidate possible benefits in the intracellular survival of the co-occurrence of S. aureus wild type and Δagr mutant cells, like it can be found in sites of an infection, a co-infection assay was established. With the co-infection assay the simultaneous and competitive intracellular survival in comparison to the individual intracellular survival was followed for three days post-infection (p.i.). The single and the co-infection revealed that the wild type was able to replicate more efficiently during the first hours p.i. than the Δagr mutant, but the mutant was able to survive more efficiently. The extracellular proteome of S. aureus represents the key compartment for virulence factors. Virulence factors are secreted or bound to the surface of the S. aureus cell. With the infection workflow applied in this study, secreted proteins are lost during the enrichment of the intracellular bacteria for proteome analysis. Therefore, no information about the levels or the regulation of virulence factor expression can be acquired in the cell culture infection model using cell sorting approaches. Hence, the extracellular proteome of S. aureus was analyzed in vitro from shake flask experiments. To get a comprehensive overview of the regulatory impact of different global regulators onto the secretome, S. aureus LS1 mutants lacking the global regulators Agr, SarA and SigB were compared to the respective wild type. Additionally the protein level of the secretome of the well characterized and frequently used S. aureus strains 6850, CowanI, HG001, LS1, SH1000, and USA300 was comparatively analyzed. This project was performed in collaboration with the group of Prof. Löffler from the Institute of Medical Microbiology in Jena. The data of the extracellular proteome generated in this thesis were combined with phenotypic and toxicity data to explain strain differences in invasiveness, cytotoxicity, phagosomal escape, and intracellular persistence in infection experiments.
Microbial infections can be either caused by a single species or complex multi-species consortia. One of the most prominent opportunistic human pathogens leading to mono- or mixed-species infections is the Gram-negative bacterium Pseudomonas aeruginosa. Understanding the molecular basis of its adaptation to infection-related stresses is an essential prerequisite for the prevention and treatment of P. aeruginosa infections. We therefore employed state-of-the-art proteomics approaches to elucidate the molecular adaptation mechanisms of P. aeruginosa to infection-related conditions. Moreover, structure, function and interaction of complex microbial consortia containing P. aeruginosa and causing catheter-associated urinary tract infections were investigated by metaproteomics analyses. Our investigations revealed that the adaptation of P. aeruginosa during infection is either based on gene expression changes caused by environmental signal integration or by gene mutations leading to a selective advantage in a particular host environment. In study I, investigating the proteome response of P. aeruginosa biofilms to the clinical relevant antibiotic ciprofloxacin, global changes in the protein profile were observed. Ciprofloxacin induced the expression of proteins involved in the Lex-induced SOS-response, drug efflux pumps and gene products of the ciprofloxacin-responsive prophage cluster and repressed the expression of porins and DNA-binding proteins. In study II the transcriptome and proteome of two clonal P. aeruginosa lineages during long-term colonization of cystic fibrosis (CF) patient’s lungs were analyzed. Point mutations in global regulator genes, i.e. retS, gacS, and gacA, were identified by genomic sequencing. Inactivation of RetS, found two years after the initial colonization, induced the expression of genes involved in chronic infections and coding for the type 6-secretion system (T6SS). Additional mutations in the GacS/GacA two-component regulatory system (TCS) were found to repress the expression of T6SS proteins and to induce the expression of proteins belonging to the type 3-secretion system (T3SS). In study III we elucidated the niche-specific adaptation of P. aeruginosa isolates from different infection sites by investigating their protein expression patterns and glucose metabolic fluxes. We could show that isolates from the urinary tract express a higher amount of proteins involved in the acquisition of micronutrients (i.e. iron) and carbohydrates compared to isolates from the CF lung. In study IV 16S rDNA sequencing and metaproteomics were employed to demonstrate that the investigated CAUTI-related biofilms consisted of two to five different species with one or two species dominating the mixed community. Following this line of research, we investigated in study V structure and function of a biofilm of a long-term catheterized patient, which was predominantly composed of P. aeruginosa and Morganella morganii, but also contained a minor proportion of the obligate anaerobe Bacteroides sp.. The comparison of in vivo and in vitro protein expression profiles of P. aeruginosa and M. morganii indicated that iron and carbohydrates are the major growth-limiting factors in the bladder. These results indicate different nutritional strategies of the two pathogens in the bladder environment. A comparison of urinary protein profiles of healthy persons and catheterized patients suggested that the human innate immune system is induced by CAUTIs. Moreover, numerous proteins involved in nutritional immunity, e.g. iron-, calcium- and magnesium-binding proteins, were found to be more abundant in the urine of catheterized patients. A follow-up (meta)proteomics study (study VI) aiming at the elucidation of interspecies interactions during multi-species infections indicated that the urease-positive uropathogen Proteus mirabilis induces the precipitation of metal ions by urine alkalization and thereby limits the availability of these important micronutrients for other co-infecting bacteria. This limitation seems to be sensed by the P. aeruginosa PhoP-PhoQ two-component system (TCS) leading to an increased resistance to antimicrobial peptides and biofilm-forming capacity of the pathogen. Also during co-cultivation of P. aeruginosa with Staphylococcus aureus a slight increase in the expression of the PhoP-PhoQ TCS and the alkaline protease could be observed (study VII). In study VIII a combined metagenomics and metaproteomics approach was employed to investigate structure and function of the lichen Lobaria pulmonaria, a complex consortium consisting of a fungus, an algal partner, cyanobacteria, and a highly diverse bacterial microbiome. The results presented in this work contribute to a better understanding of the manifold and complex bacterial adaptation mechanisms to infection-related and environmental stress and thereby foster the development of novel treatment and prevention strategies.
With the growing importance of advanced lighting technologies, customers expect additional functionality and higher comfort from fluorescent lamps. However, the ability to regulate light intensity (dimmed operation), in particular, exerts enormous stress on fluorescent lamps’ electrodes, leading to increased electrode erosion and significantly reduced lifetimes. During the operation of a fluorescent lamp, free barium (the main compound of the electrode emitter) is produced at the electrode responsible for lowering the work function in order to enable energy-efficient and durable electrodes with lifetimes of up to 20,000 hours. Despite their relatively long lifetimes, electrodes remain the lifetime-limiting factor of a fluorescent lamp. Therefore, for practical applications (e.g., maintaining quality control, adjusting operational parameters, and evaluating new electrode designs), electrode erosion is of special interest. The actual erosion-measurement methods determine a time-averaged erosion level over several hundred operation hours. Thus, a quasi-instantaneous measuring method (short measurement) is still necessary to determine erosion during operation. Such a method would allow us to compare erosion under different discharge conditions (currents, frequencies, or heating currents) from the same electrode in the same lamp. This work focuses on the determination of absolute electrode erosion during the stationary operation of commonly used fluorescent lamps. Commercial T8 lamps (fluorescent lamps with a diameter of 8/8 inch) are investigated at the operating mode of commonly used electronic ballasts with frequencies of several kHz. Operations under standard and dimmed conditions with an additional heating current to reduce electrode erosion are investigated. Electrode erosion is characterized by the erosion of barium, the main compound of the electrode. Therefore, laser-induced fluorescence (LIF), which is the most sensitive method for this application, is applied to determine the absolute densities of the eroded barium in the electrode region. These densities are affected by the plasma in the electrode region and do not directly represent the absolute barium erosion. To overcome this limitation, a new method based on a special measurement technique in combination with a barium-diffusion-model is developed to determine the absolute barium erosion based on the measured densities. It has been found that the barium densities in the electrode region are lower than the equilibrium pressures produced by the reduction of the barium oxide. This could be caused either by a reduced reaction rate, the reduced diffusion of the reactant (primarily barium oxide) or by reduced barium transport through the porous emitter. However, these results suggest that barium erosion depends on temperature and emitter structure, which vary over an electrode’s lifetime. For currents significantly higher than the nominal lamp current, a drastic increase in emitter evaporation is found. Such, an increase in the lamp current from 300 mA to 500 mA leads to an increase in emitter evaporation by a factor of five. Using the lamp for a long period of time under these conditions therefore reduces the lifetime by a factor of five. Notably, at this dramatically increased erosion level, the hot spot temperature only increases from 1120 K to 1170 K. Investigation of various frequencies from 50 Hz to 5 kHz revealed no significant dependence of emitter evaporation on frequency.
Geopolymers (GPs) are inorganic binders created by adding alkaline solution (e.g. KOH) to silicates such as furnace slag, fly ash or clay to dissolve Si and Al that polymerises and precipitates to form an inorganic binder material while hardening. GP properties are similar to ordinary Portland cement regarding their high compressive strength or low shrinkage but they are particularly notable for a high resistance to acid and fire. However, the most significant advantage of GP cements is their low CO2 footprint. The most common clay used as GP raw material is kaolin. The aim of this study is to investigate the suitability of illitic clays as a cheaper alternative to kaolin and determine the necessary preparation steps required to produce effective GP binder materials. Three clays dominated by dioctahedral 2:1 layer silicates, in particular interstratifications of mica and smectite were investigated: (1) Illitic clay from Friedland, Northern Germany, containing an irregularly stacked illite-smectite interstratification (R0 I-S), (2) rectorite from Arkansas, USA, as a regular interstratification of mica and smectite, and (3) clay stated as “sárospatakite” from Füzérradvány clay deposit, Northern Hungary, containing a long range ordered I-S (R3). The three types of I-S interstratification-rich clays were extensively characterised and the Friedland clay, as the most probable raw material for GP production, was studied in more detail including several size fraction analyses. These results are used to investigate and determine the parameters necessary to produce suitable precursors for GP binders. Different approaches of clay activation to yield a highly reactive material by milling and heating were examined. Milling was found to be suitable as a preparation step after heating breaking up sintering aggregates to create pathways for the alkaline solution, but not as a substitute for heating. Important parameters for the precursor design such as temperature, time, and heating rate are determined and discussed. Geopolymerisation is considered to be a multi-parameter system and is influenced strongly by the degree of dehydroxylation, Si:Al ratio, or amount of 5-fold coordinated Al. However, in contrast to kaolin-based systems, none of these parameters explain why the illitic Friedland clay heated to 875 °C was found to be most suitable for GP binders. Based on leaching experiments and specific surface area (AS) measurements of the heated Friedland clay, a conceptual model is presented to explain the observed relationship between the heating temperature and the subsequent compressive strength of the GP cement. An optimum between the counteracting reactions of decreasing AS (fewer particles must be covered with GP phase) and decreasing Si+Al dissolved (less GP phase created) is necessary, which exists at 875 °C for the Friedland clay. In this state enough GP phase is created to bind all remaining sintering aggregates to form a cement with high compressive strength. This relationship can be expressed as (Si+Al) / AS (sum of dissolved Si and Al divided by the surface area of grains that must be covered with GP phase), and can be used as a predictive tool for determining the optimal heating temperature. The results presented in this thesis indicate that illitic clays are suitable raw materials as GP binders if the necessary preparation steps of dehydroxylation, sintering and grinding are made. Proxies used to evaluate the optimal conditions for making GP binders are determined including the (Si+Al) / AS ratio as a key relationship that controls the cementation process and determines its ultimate hardness.
Background: Common to most theory-based intervention approaches is the idea of supporting intentions to increase the probability of behavior change. This principle works only if (a) intentions can be explained by the hypothesized socio-cognitive constructs, and (b) people actually do what they intend to do. The overall aim of this thesis was to test these premises using two health behavior theories applied to reducing at-risk alcohol use. Method: The three papers underlying this thesis were based on data of the randomized controlled “Trial Of Proactive Alcohol interventions among job-Seekers” (TOPAS). A total of 1243 job-seekers with at-risk alcohol use were randomized to stage tailored intervention (ST), non-stage tailored intervention (NST), or control group. The ST participants (n = 426) were analyzed in paper 1. Paper 2 was based on the baseline and 3-month data provided by the NST participants (n = 433). Paper 3 was based on baseline, 3-, 6-, and 15-month data provided by the control and ST group not intending to change alcohol use (n = 629). Latent variable modeling was used to investigate the associations of social-cognitive constructs and intentional stages (paper 1), the extent to which intentions were translated into alcohol use (paper 2), and the different trajectories of alcohol use among people not intending to change as well as the ST effect on the trajectories (paper 3). Results: Persons in different intentional stages differed in the processes of change in which they engaged, in the importance placed by them on the pros and cons of alcohol use, and in the perceived ability to quit (ps < 0.01). The association between intentions and alcohol use was weak. The magnitude of this intention-behavior gap depended on the extent to which normative expectations have changed over time (p < 0.01) and was reduced when controlling for the mediating effect of temporal stability of intentions. The gap was also present among people not intending to change: Even without intervention, 35% of the persons reduced the amount of alcohol use after 15 months (p < 0.05) and 2% achieved abstinence. Persons with heavier drinking (33%) and persons with low but frequent use (30%) did not change. Persons with frequent alcohol use seem to benefit less from ST than those with occasional use, although differences were not statistically significant. Conclusions: Intentions can be quite well explained by the hypothesized socio-cognitive constructs. In a sample of persons who were, as a whole, little motivated to change, the precision of how well intentions predict subsequent alcohol use was modest though. Time and socio-contextual influences should be considered.
Cancer is one of the leading causes of death in industrialized nations. Nowadays, cancer therapy mainly consists of surgery, radiation and chemotherapy. Thanks to intensive research alternative treatment strategies like gene therapy and especially immunotherapies are on the rise. Immunotherapies base on the idea of stimulating and supporting the patients immune system to generate an effective anti-tumor immune response. Dendritic Cells are perfect targets for this purpose, since these potent antigen-presenting immune cells influence the balance of the immune system by defining the route of action. Stimulation of these cells by activation of cellular signaling pathways results in maturation, upregulation of surface molecules and secretion of cytokines. A20 has been identified as a regulator of dendritic cell maturation and attenuator of their immune stimulating properties. Hence, the blockade of that natural inhibitor reveals an elegant way to activate cellular pathways of DCs. A siRNA against A20 obtains a functional blockade via RNA interference if it can be delivered into the cytoplasm of the target cells. CpG oligodeoxynucleotides can be used for this intracellular transport. CpGs contain DNA motifs similar to those found in bacteria. Innate immune cells can detect this DNA via the toll-like receptor 9 getting activated and stimulated. CpG oligodeoxynucleotides are already in clinical use as adjuvants in vaccines and in cancer therapy approaches. Linking A20-specific siRNA to CpG enables A20 regulation and cell stimulation selectively in toll-like receptor 9 expressing cells, like dendritic cells. Aim of this study was to investigate if these constructs trigger immune cell activation and if they are able to break immune-suppression in the tumor environment to enhance anti-tumor immunity. A long-term growth factor dependent bone marrow-derived dendritic cell culture has been established in order to analyze the CpG-siRNA A20 effects on murine dendritic cells. The constructs were internalized shortly after administration (1 hour) and led to cell stimulation/activation. The intraperitoneal treatment with the constructs induced local cellular activation and systemic IL-6, TNF-α cytokine production in healthy mice. Subcutaneous growing B16 melanoma tumors were treated peritumorally to analyse whether the observed immune-stimulation has effects on established tumors. The silencing of A20 enhances CpG-induced activation of NF-κB followed by elevated expression of IL-6, TNF-α and IL-12 in this tumor model. These changes led to enhanced anti-tumor immune responses manifested by increased numbers of tumor-specific cytotoxic T cells, high levels of tumor cell apoptosis and delayed tumor growth. New constructs were designed and tested on dendritic cells isolated from healthy donors in order to test whether the obtained results for the murine system are applicable to the human system. CpG-siRNA A20 constructs induced cell activation and cytokine expression (IL-6, TNF-α) significantly more than CpG alone. Even though responds of the donor DCs were variable, there are promising similarities to the results of the mouse experiments. The significant role of A20 in controlling the immune-stimulatory activity of DCs has been confirmed in this study. The novel CpG-siRNA A20 constructs provide a strategy for simultaneous A20 silencing and CpG-mediated cell stimulation directly in vivo. This therapeutic approach induces potent adaptive and innate immune responses against established tumors in mouse melanoma model leading to prolongation of survival. CpG-targeted A20 blockade is a new immune-stimulatory approach, which could be suitable for supplementation or optimization of clinical tumor treatments.
Using geopolymers can reduce significant amounts of CO2-emissions during the production compared to Portland cement. Although illite/smectite clays are very abundant on earths crust and rich in SiO2 and Al2O3, studies of their geopolymerization potential are rare. Thus, the illite/smectite clay of Friedland (NE Germany) was calcined (850 °C) and ground to form a reactive metaclay and then mixed with synthetic gibbsite (to test the effect of Al-concentration) and 6 molar NaOH or KOH, in order to study their geopolymerization at 25, 50 and 75 °C within 28 days. The raw clay, the precursors, and the geopolymers were characterized by XRF, XRD, SEM-EDX, Flame-AAS, nitrogen adsorption and compressive strength test. 25 °C was too low to initiate the geopolymerization of illite/smectite. Increasing the curing temperature increased the reactivity of meta-illite/smecite. Si and Al dissolution was confined to the first 24 h, followed by the hardening of the geopolymers within 28 days. At 50°C, KOH-activation formed amorphous and mesoporous aluminosilicates, which significantly cemented the particles and agglomerates of the metaclay. Consequently, geopolymers with high compression strength (~38 N/mm2) were formed. Adding 10 wt% Gibbsite (precursor Si/Al = 2.1) to the metaclay strengthened the formation of amorphous aluminosilicates and increased the compression strength of the geopolymer by 20 % from 38 - 45 N/mm2. At 75 °C, the reactivity of the metaclay in NaOH was higher than in KOH. NaOHactivation at that temperature formed geopolymers with high compression strength (~30 N/mm2) due to the cementation by microporous phillipsite (K-, Na-zeolite) crystals. Thus, alkali-activation of the calcined and ground meta-illite/smectite from Friedland form high strength geopolymers under hydrothermal conditions.
The Institute of German Dentists [Institut der Deutschen Zahnärzte (IDZ)] conducted four national cross-sectional surveys of oral health in the German resident population [German Oral Health Studies, "Deutsche Mundgesundheitsstudien", (DMS)]: in 1989 (DMS I, only West Germany), 1992 (DMS II, only East Germany), 1997 (DMS III), and 2005 (DMS IV). In this study, the first two surveys (1989/92) were merged to achieve comparability with the last two studies. The Studies of Health in Pomerania (SHIP) are two independent regional cross-sectional population-based studies conducted during 1997-2001 (SHIP-0) and 2008-2012 (SHIP-Trend) in northeast Germany. In this thesis, we addressed three main questions: First, we aimed to explore the relative contributions of clinical oral health variables assessing caries, periodontal status, and prosthetic status to self-perceived oral health by means of an age-specific approach in DMS IV. Second, we aimed to assess the changes of dental health in West and East Germany between 1989 and 2005 in DMS I-IV. Third, we aimed to evaluate the changes of periodontal status and number of teeth within the last decade based on data from the DMS and the SHIP studies. To explore the associations of self-perceived oral health with clinical oral health variables, we developed separate multinomial logistic regression models for adults and seniors in DMS IV by using stepwise methods. To assess the changes of dental health in West and East Germany between 1989 and 2005, we applied regression models and assessed associations between region, survey year, their interactions and variables assessing dental disease status (number of missing, filled, decayed and sound teeth, the DMFT-index and the probability of having ≤20 teeth), adjusting for potential risk factors for caries. To assess changes of periodontal status in Germany, prevalences, percentages and numbers of teeth affected were defined. In summary, the number of unreplaced teeth showed the strongest association with self-perceived oral health in adults and was the second variable to enter the model for seniors during the stepwise selection process. Between 1997 and 2005, the number of missing teeth considerably decreased in DMS but East Germans had consistently more missing teeth than West Germans in each survey year. Further, during the last decade, the periodontal status significantly improved in SHIP and in West German adults, which might translate into a even higher tooth retention in the future.
The Black Sea experienced fundamental environmental changes during the last glacial-interglacial transitions. During the last 670,000 years, the Black Sea was at least twelve times connected to Mediterranean Sea, received saltwater via the Bosporus strait, and evolved to a brackish anoxic water body. A lowered global sea level during glacials caused isolation of the basin from the open ocean, and the Black Sea became limnic and well-oxygenated. The last glacial-interglacial history of the Black Sea is relatively well understood and demonstrates the high sensitivity of this basin to global climate and environmental changes. Previous studies particularly focussed on the evolution during the last glacial with meltwater pulses, warming during the glacial-interglacial transition, and the development from a ventilated lake to the present euxinic/brackish water body. Apart from the interglacial warming, the Black Sea sediments clearly recorded short-term abrupt temperature changes associated with cooling during Heinrich events and the Younger Dryas as well the Bølling-Allerød warming, which occurred over the northern hemisphere. However, our knowledge about the Black Sea history before 40,000 BP is comparatively poor even though crucial for understanding hemisphere-wide atmospheric teleconnection patterns and climate mechanisms during older glacials and interglacials. A multiproxy approach has been applied on three gravity cores and surface sediment from the southeastern Black Sea comprising ostracod geochemistry (Mg/Ca, Sr/Ca, U/Ca, 87Sr/86Sr), major and trace elements (Al, Ca, Fe, K, Ti, Mo, Re, Sr, W, Zr) and organic biomarkers (n-alkanes, alkenones, UK’37-palaeotemperatures, glycerol dialkyl glycerol tetraethers, TEX86-palaeotemperatures, BIT-index). The cores cover the last 134,000 a and provide new findings concerning the last and penultimate glacial-interglacial transitions (12,000- 0 a BP; 134,000-120,000 a BP) as well as the abrupt climate changes during the last glacial period (64,000-20,000 a BP). The major topics of this work are i) the penultimate glacial-interglacial transition (Saalian-Eemian), ii) the environmental conditions in the Black Sea “Lake” during abrupt climate oscillations of the last glacial period, iii) and the comparison of the redox evolution during Eemian and Holocene sapropel formation. Two meltwater pulses caused a pronounced freshening of the Black Sea “Lake” during the ending penultimate glacial, which originated from the melting Fennoscandian Ice Sheet. Due to unusually high radiogenic Sr-isotope signatures of benthic ostracods, a potential Himalayan source communicated via the Caspian Sea is also likely. During the glacial-interglacial transition the temperatures in the Black Sea increased from 9°C to 17°C and the associated global sea-level rise allowed the reconnection between the Mediterranean and Black Seas around 128,000 a BP. Eemian sapropel formation started shortly after the intrusion of saltwater and the water body became gradually euxinic. In comparison with the Holocene sapropel, the Eemian proxy records imply warmer and stronger euxinic conditions and distinctly higher enrichments of redox-sensitive trace elements like e.g. Mo, Re, and W. Because the seawater forms the ultimate source for several trace metals, these enrichments were most likely favoured by the higher salinity due to a ca. 10 m higher sea level and enhanced Mediterranean Sea - Black Sea water exchange. Based on biomarker analyses, lake surface temperatures could be calculated for the first time for the period between 64,000 and 20,000 a BP, which includes the Marine Isotope Stage (MIS) 3. Abrupt stadial/interstadial temperature changes with amplitudes of up to 4°C in the Black Sea “Lake” clearly resemble the Greenland Dansgaard-Oeschger pattern. However, an exceptional cooling during the so-called Heinrich events is not evident from our cores. This finding agrees with modelling results proposing a deeper penetration of regular Dansgaard-Oeschger cycles into the Eurasian continent when compared with the Heinrich events. During the warm and more humid interstadials, the Black Sea “Lake” became fresher and more productive and the water level probably increased. During the colder and more arid stadials the freshwater supply was decreased and productivity was low. Aridity and stronger westerly winds favoured the input of aeolian transported detritus. The long-term pattern from 64,000 to 20,000 a BP demonstrates a strong influence of orbital-driven changes in the Eurasian ice volume and associated atmospheric circulation patterns over the Black Sea region. The present multi-proxy study demonstrates that the sediments from the SE Black Sea clearly record not only orbital- but also millennial-scale climate and environmental changes and thus represent an important continental archive for climate change bridging the North Atlantic-Eurasian corridor.
The main issue of this thesis was the investigation of dusty plasmas in magnetic fields. We made use of spherical paramagnetic as well as non-magnetic plastic particles in the micrometer range, so-called dust particles. The particles were then trapped in the sheath region of the driven lower electrode of an rf discharge. The plasma chamber was surrounded by coils to apply a horizontal magnetic field with field strengths of up to B=50mT at the particles’ position. In this configuration the sheath electric field and the external magnetic field were perpendicular to each other. Only the electrons could be magnetized but this leads to several forces acting on the dust particles. In some aspects the dust clusters with the magnetic particles show a behavior that is in complete contrast to those consisting of the standard non-magnetic plastic particles. Both types of particles have in common that the dust clusters were found to move either towards the positive or negative ExB-direction as a reaction to the magnetic field. Whether the positive or negative direction was preferred depended on the experimental conditions. The forces that lead to this transport are plasma-based forces induced by the magnetic field. These investigations were performed on two-dimensional horizontal particle systems. Vertically aligned dust particles due to the ion focus interaction have also been studied to determine the influence of horizontal magnetic fields on the stability of such dust pairs. Under certain conditions the vertical alignment can be broken up by the magnetic field. Some additional experiments on the interaction of non-magnetic dust particles in a plasma with UV irradiation were performed, but a significant decrease of dust charge due to a photoelectric effect was not detected. In summary, even relatively weak horizontal magnetic fields have a strong influence on dust particle systems.
The research aims at assessing the impacts of the Benefit Sharing Mechanism (BSM) pilot policy on the socioeconomic factors and natural-resource management in the co-management area between the Bach Ma National Park and the Thuong Nhat community. This is a new approach in Special-Use Forests (SUFs) management in Vietnam, which is needed to assess the scaling up of a national policy on co-management of SUFs in the future. A case study was undertaken in the Bach Ma National Park, which was one of the two national parks chosen to pilot the BSM policy under the Prime Minister’s Decision No 126 (Government-126 2012). In this study, both qualitative and quantitative data was collected on BSM implementation schemes; their impacts on local natural-resource use; local awareness of rights, benefits, and responsibilities when participating in the BSM; and local perspectives on the BSM’s achievements, failures, and future potential. Analysis revealed that the local community strongly supported the BSM implementation in the Bach Ma NP, displaying a high level of demand for the measures and significant involvement. Furthermore, thanks to the local people’s participation in the BSM implementation, their household incomes increased and their awareness and practices of NTFP sustainable use and forest protection in the co-management area improved”. The BSM implementation also exposed three main areas of weakness. These included poor compliance with the sustainable-harvest regulations, the apparent over-complexity of the the harvest-application procedures, and the users’ low contributions to the village fund after the NTFP harvest. The current research revealed that, although the local awareness and compliance with the BSM procedures increased annually after BSM implementation, the level of self-management and compliance was still quite low and needed to be improved. Furthermore, some conflicts have arisen between NTFPs users from village to village in Thuong Nhat and between local traders and NTFP collectors. Besides, the research identified two major negative practices: overexploitation of NTFPs and taking advantage of the NTFPs harvest to cut trees or trap animals. This dissertation presents various possibilities for improvement of the BSM implementation through (i) raising local people’s awareness; (ii) simplifying BSM procedures; (iii) clarifying incentives and tasks of BSM actors to enhance co-patrolling and monitoring activities; and (iv) creating good incentives either based on the livelihood program for those who actively comply with the BSM regulations or direct payments to those who join forest-protection activities. Finally, the research scrutinized certain challenges to future duplication of the BSM in other SUFs in Vietnam. To expand the BSM approach to other SUFs, the Ministry of Agriculture and Rural Development needs to develop a guideline for BSM implementation to encourage the relevant stakeholders’ involvement. The guideline for national BSM implementation should take account of the differences between local contexts, as well as create the necessary, flexible regulations to be applicable in practice. Therefore, based on the guideline, additional steps are necessary for the development of appropriate specific measures in the course of the BSM implementation at the provincial and local levels.
Mutualisms are ubiquitous in nature and shape whole ecosystems. Although species benefit by interacting with each other, they permanently act selfishly. As a consequence, the involved partners must balance gaining the maximal benefit while accepting a certain amount of costs. Changes in the environment, however, may alter selection pressures and lead to a shift in the relative costs and benefits for both involved species. Due to this complexity, many mutualisms and their underlying processes, such as the dependence of the involved species on each other, are only poorly understood. Moreover, in several so-called mutualistic interactions it is unclear if they are in fact beneficial for all partners because detailed cost-benefit analyses are missing. The aim of my thesis was to contribute to a better understanding of the basic principles of mammal-plant mutualisms with special emphasis on the interdependence of the involved species. Using the interaction between an insectivorous bat species (Kerivoula hardwickii) and carnivorous pitcher plants (genus Nepenthes) as a model system, I conducted a detailed cost-benefit analysis to test if the partners interact mutualistically and are strongly dependent on one another. I hypothesised that pitchers of these plants serve as high quality roosts for the bats while the bats in turn fertilise the plants via their nutritious faeces. For the involved species the costs of the interaction should be lower than the gained benefits, but general costs should increase in the absence of the partner. Over the course of my field research, I found the bats roosting in three Nepenthes species, but the bats occupied intact pitchers of only one species, Nepenthes hemsleyana. In Nepenthes bicalcarata and Nepenthes ampullaria, the bats used senescing or damaged pitchers whose high amount of digestive fluid had drained off. Thus, only N. hemsleyana was potentially able to digest bat faecal matter, and thereby benefit from the bats. My cost-benefit analysis showed that N. hemsleyana plants strongly benefited from their bat interaction partner: In feeding experiments the plants gained between 34% and 95% of their nitrogen from bat faeces, which significantly improved their growth, photosynthesis and survival. In contrast, plants without access to faeces could not fully compensate the induced lack of nutrients by using arthropod prey. Field observations revealed no obvious costs for the pitcher plant. N. hemsleyana pitchers occupied by bats did not differ in their lifespan from unoccupied ones as bats did not injure the plants’ tissue. The interaction was also advantageous for K. hardwickii because N. hemsleyana offered high quality roosts with a favourable microclimate and low parasite infestation risk. Consequently, bats roosting in N. hemsleyana pitchers were in better condition than those roosting in dead N. bicalcarata pitchers. Although N. hemsleyana pitchers are rare in the natural habitat, bats could easily find and identify them due to an echo reflector, which reduces time and energy costs for roost detection. Most N. hemsleyana plants continuously provided at least one intact pitcher meaning bats could return to the same plants over a period of several months or even years. The interaction between K. hardwickii and N. hemsleyana can be classified as an asymmetric facultative mutualism with stronger dependence of the plant partner. N. hemsleyana has outsourced arthropod capture and digestion to its mutualistic bat partner while arthropod attraction is strongly reduced. Contrastingly, several populations of K. hardwickii frequently use alternative roosts. Strong selective pressure on the plants could be the consequence to attract bats with a potential stabilising effect on the interaction: N. hemsleyana has to outcompete the involuntarily offered roosts of the other Nepenthes species in terms of quality and accessibility. My thesis revealed complex interdependencies in an animal-plant mutualism. This study exemplifies that rigorous cost-benefit analyses are crucial for the classification of interspecific interactions and the characterisation of how the involved species affect and depend on each other.
This work focuses the glycoprotein H of PrV which was analysed by structure-based functional analyses by targeted site-directed mutagenesis. Disulfid bridges were introduced at specific sites and the effects on the fusion mechanism investigated. A revertant was obtained and characterised during the studies, as well as chimeric glycoprotein H proteins were constructed, combining the different domains of the glycoproteins Hs of PrV and HSV1.
This thesis delves into some very important scientific challenges for the stellarator concept as a whole and W7-X in particular, namely, how one effectively interfaces the hot plasma with the material walls of the experiment, in special how the plasma heat and particle fluxes are controlled. The fundamental concept that will be used in W7-X for particle and heat exhaust is the island divertor. A number of theoretical and numerical studies have been performed to guide the design of the divertor components. The actual divertor components are in series production at this time, and are largely compatible with the expected heat loads. However, with the sophisticated codes now available, it has become clear that there are some, otherwise very attractive, operational scenarios that could lead to overloading of the W7-X divertors. At least one mitigation strategy was proposed but was until now not analyzed in sufficient detail. In this thesis, state-of-the-art codes are used to analyze this previously proposed mitigation strategy; they are also used to develop several alternative mitigation schemes, which may in the end be advantageous. The work performed here shows not only that it is conceivable to solve this already identified problem in new and arguably better ways but also that the W7-X coil set has enough degrees of freedom that many important long-pulse plasma effects can be effectively mimicked in short-pulse operation. This opens up a rich research program in the early phases of operation and may therefore lead to a significant acceleration of the scientific program to control and optimize the divertor operation in W7-X. The main scientific challenge for the island divertor operation in W7-X is that, since the divertor geometry is now fixed, the magnetic field structure must be adjusted to the divertor geometry, or additional plasma-facing components must be manufactured and installed. Well before this thesis work was done, such additional plasma-facing components were proposed. These are called scraper elements (SEs). As a part of this work, computer simu- lations were performed in order to obtain a better knowledge base regarding the SEs. To analyze the effect of the SE, edge plasma physics simulation code EMC3-Eirene, was used, in combination with state-of-the-art magneto hydrodynamic (MHD) equilibrium codes. This combination was computationally non-trivial and new, and it has led to important insights. One main result of this study is that the SEs significantly reduce the particle exhaust capabilities in steady state operation; this is a concern for W7-X. To test and further quantify this deleterious effect, physics experiments with a prototype SE should be performed as soon as possible, ideally in the first operation campaigns before the approximately two-year break needed to complete W7-X for steady-state operation. In 3 this first operation phase, however, the necessary combination of plasma parameters, heating power, and achievable pulse length is not accessible. This means, on the one hand, that the problem described will not be present in the first operation phase; on the other hand, the physics implications of installing an SE would appear not to be experimentally testable in that phase. One major finding of this thesis is that the coil system of W7-X is flexible enough to allow such an early experimental test. Different stages of high performance long-pulse discharge can be effectively mimicked in the experiment by a targeted use of the available coil sets. Thus, even in the early phases of the W7-X program one can assess both the protection capabilities of the SEs and their effects on particle exhaust and plasma performance in general. These mimic scenarios also have the potential to test other possibilities for divertor pro- tection besides the SE. Such strategies are addressed in this thesis. The two most promising strategies identified here can be classified as plasma shift and iota control. Both adjust the edge magnetic field to better fit the divertor geometry. This is done slowly but dynamically — i.e. during a long plasma discharge.
The current work is focused on the study of two surface modification plasma processes, (i) the active screen plasma nitriding (ASPN) and nitrocarburizing (ASPNC) for the hardening of ferrous surfaces and (ii) the microwave plasma assisted chemical vapor deposition (MW-PACVD) for the synthesis of single crystal and doped diamond. Conventional and active screen plasma nitriding processes have been investigated in a cylindrical, industrial scale ASPN reactor with a volume of about 1 m3, using low-pressure pulsed dc H2-N2 plasmas with admixtures of CH4 or CO2. The experiments were carried out (i) with the plasma at an internal model probe, (ii) with the plasma at the active screen (floated model probe) and (iii) with the plasma at the active screen and an additional plasma at the biased model probe. For deeper insights in ASPN and ASPNC processes, a laboratory scale plasma nitriding monitoring reactor, PLANIMOR, has been constructed. The main feature of this reactor is the linear configuration of the electrode setup combined with a tubular glass vessel, overcoming the experimental disadvantages of cylindrical laboratory scale ASPN reactors. With the help of infrared laser absorption spectroscopy (IRLAS) the rotational temperature of the stable molecules in the gas phase and the concentrations of the precursor, CH4, and the reaction products (NH3, HCN, C2H2, C2H4, CO, CH3) could be determined in both reactors, depending on the plasma power, the gas mixture, the plasma at the model probe and the admixture of CH4. Furthermore, the admixture of CO2 as the carbon containing precursor has been studied in the ASPN reactor leading to an additional reaction product H2O. The concentration of the molecular species has been found being in a range of 1012 to 1016 molecules cm-3. Also optical emission spectroscopy (OES) has been applied during the studies for analyzing the emission of the plasmas in the nitriding and nitrocarburizing processes. A similar behavior of the plasma chemistry in PLANIMOR comparing to that in the ASPN reactor has been found. Beside the plasma chemical investigations, both reactors have been used for the treatment of C15 steel samples. These samples have been analyzed with the help of GDOES resulting in the elements profile of the treated surfaces. It has been found that samples treated in PLANIMOR reach comparable nitriding results as samples treated in the ASPN reactor. Another focus of interest during the investigations about plasma nitrocarburizing has been the application of a carbon containing screen electrode as carbon source. For this purpose the carbon containing precursor and the steel screen have been substituted by a meshed carbon electrode, acting as the active screen. This change of the setup leads to a decrease of the NH3 production by a factor of 2.5 and an increase of the concentrations of HCN by a factor of 30 and of C2H2 by a factor of 70. The investigations of MW-PACVD processes used for diamond layer deposition have been carried out in a jacketed stainless steel reactor (JR), dedicated to the deposition of single crystalline diamond under high pressure and plasma power conditions. Using H2-plasmas with admixtures of CH4 and B2H6, the experiments were carried out in order to analyze the dependence of the plasma chemistry on several parameters, such as plasma power, pressure and gas mixture, in a wide pressure (p = 25…270 mbar) and power range (P = 0.6…4 kW). Using IRLAS the concentrations of six molecular species (B2H6, CH4, C2H2, C2H4, C2H6, CH3) have been monitored. With the help of OES the concentration of atomic boron could be determined. The concentrations of the detected molecular and atomic species were found to be in a range of 1010 to 1017 cm-3. With the help of the line-ratio-method the rotational temperature of the stable molecules has been determined. The temperature increased with pressure and power from 340 to 425 K. Using the Doppler broadening of the absorption line of CH3 at ν = 612,413 cm-1, the gas temperature has found to be Tg = (2000 ± 200) K under lower pressure and power conditions. For the H2-CH4 gas mixture, the experimental obtained molecular densities have been compared to those of a 1D-radial thermochemical model. The calculated radial densities have been integrated axially. For the same range the chemical processes in JR have been compared with those in a bell-jar (BJ) reactor. The hydrocarbon chemistry in JR has found to be similar to that in a BJ reactor.
This thesis investigates the biocatalytic synthesis of amines and amino alcohols. The applicability and economic feasibility of biocatalysis for chiral amine synthesis is reviewed and the findings were compared to established chemical processes using relevant process parameters (TON, TOF and STY). This review clearly showcases the potential of biocatalysis for the synthesis of chiral amines and provides a valuable guide for synthetic chemists who want to benefit from these new opportunities. Next, biocatalysis is applied for the synthesis of an amino alcohol with two stereocentres: A novel route for the synthesis of all four stereoisomers of 4-amino-1-phenylpentane-2-ol is presented. Enzymes were applied to install both stereocentres successively, which allowed the selective synthesis with high yields and optical purities. A small scale preparative asymmetric transamination yielded one amino alcohol stereoisomer selectively. The approach presented in this thesis provides a valuable option for the synthesis of this compound class as it is highly selective, step efficient and circumvents the need for protecting groups as well as transition-metal catalysis. The substrate scope of an (S)-selective amine transaminase (ATA) was altered in order to expand the applicability for amino alcohol synthesis. Protein engineering was conducted to enlarge the small binding pocket. Small scale preparative synthesis of the 1,2-amino alcohol (R)-phenylglycinol exemplifies the applicability of the evolved variants for the asymmetric synthesis of this compound. The designed variants expand the collection of ATAs that are suitable for the synthesis of amino alcohols with bulkier substituents. To deepen the understanding of ATAs further, a class III TA family wide analysis (which includes (S)-selective ATAs) is presented. After comparing the active site architectures and performing literature research amino acids were identified that correlate with the reaction- and substrate specificity of the enzymes within this family. This information is compiled in a sequence-function matrix, which allows the prediction of the main activity of biochemically uncharacterised enzymes from their sequence. These insights provide a better understanding of the activity determining residues in (S)-ATAs and class III TAs in general.
The aim of this thesis is to concentrate on the investigation of these ROS&RNS composition distribution and their production pathways in the gas phase produced by a plasma jet. By understanding the physical mechanisms behind the generation of the ROS&RNS a precise tuning and design of the composition distribution in the gas phase can be achieved. One crucial physical parameter is the dissipated power inside the plasma. Only if this parameter is known a meaningful comparison of different feed gas settings is possible. Therefore, a concept for measuring the dissipated power inside the plasma for the modified micro-scaled atmospheric pressure plasma jet( µAPPJ) is designed. Additionally, due to achievements within this thesis it is now possible to ignite a homogeneous discharge in argon and helium within the geometry of the µAPPJ. The used feed gas is a determining factor concerning the electron energy distribution function and consequently influencing the production mechanism of the ROS&RNS. First of all, the electrical characterisation of the modified µAPPJ was performed including the alpha-to-gamma transition. It is shown that the alpha-to-gamma transition power is increasing with increasing frequency. For the first time it is now feasible to investigate the influence of the dissipated power on the neutral gas temperature, the metastable atom densities and the ROS&RNS production for the modified µAPPJ with argon and helium as feed gas. Due to the possibility of changing the feed gas and controlling the dissipated power a fundamental insight into the production mechanism of the ROS&RNS generated by the plasma jet is achieved. With rising dissipated power the temperature and the metastable densities as well as the ozone and nitrogen dioxide concentrations are increasing. By adding molecular oxygen and nitrogen to the feed gas of a plasma jet the ROS&RNS composition can be tuned. However, also the dissipated power is changed by the small amount of admixtures. Due to the developed dissipated power measurements within this thesis it was possible to disentangle the influence of the admixture on the power and on the ROS&RNS production. If the dissipated power is fixed for the µAPPJ with argon and helium feed gas, respectively, the highest amount of ozone was measured with oxygen admixture in an argon discharge, the highest amount of dinitrogen pentoxide with nitrogen admixture in an argon discharge and the highest amount of nitrogen dioxide with nitrogen admixture in a helium discharge. Beyond the influence of the dissipated power and the molecular admixture on the ROS&RNS production the feed gas temperature is a crucial parameter for the corresponding chemical reactions. By changing this parameter the distribution of ozone and nitrogen dioxide can be tuned precisely in such a way that with increasing temperature the ozone density goes down and the nitrogen dioxide density rises. Another determinant for the ROS&RNS composition produced by an atmospheric pressure plasma jet is the influence of ambient air. If the ambient air is changing from pure nitrogen to pure oxygen atmosphere the ozone density produced by the plasma jet is increasing. For the same conditions the nitrogen dioxide has a maximum at an oxygen-to-nitrogen ratio of 1:1. To avoid the influence of the ambient air on the reactive species production the afterglow of the µAPPJ was prolonged with a glass tube. By increasing the amount of molecular admixtures to the feed gas with each in equal quantities a totally different ROS&RNS composition can be obtained compared without the glass tube. It figures out that for small molecular admixtures the reactive species composition is nitrogen dominated and for higher admixtures it is oxygen dominated. Consequently, by shielding the ambient air from the active effluent and by admixing molecular oxygen and nitrogen the ROS&RNS composition can be designed.
Against the background of post-socialist transition and nationwide economic growth in Azerbaijan this dissertation analyses the utilisation of rangeland resources by mobile pastoralists in Azerbaijan. The study was motivated by the initially scarce knowledge about pastoralism in Azerbaijan and concerns about declining pasture condition due to growing livestock numbers. The study was guided by three research objectives, which were addressed cumulatively in five publications. The first objective aims at analysing the development of pastoralism in the transition period in comparison to developments in the pastoral sectors of other post-socialist countries. Secondly, the study addresses socio-economic causes of inappropriate pasture management by pastoralists. Finally, in an application-oriented research process recommendations for improving the management of pastoral farms and pasture governance were developed in order to mitigate inappropriate pasture management. For addressing these objectives the study frames the management of rangelands as a complex natural resource management system, in which the environment, users, governance structures, and the socio-political context are closely linked. Within this framework, the study focused especially on pastoral farms using a farm economics approach and on pasture governance with employing institutional economic theories. Regarding the methodology, a case study approach in four study regions was chosen in order to deal with the ex-ante limited information about Azerbaijani pastoralism and the explanatory aim of research.
Having been regarded as wastelands until quite recently, wetlands are increasingly acknowledged as ecosystems of high biodiversity. Wetland restoration projects are often accompanied by the implementation of specific species management programs. Naturally, for effective management measures, profound knowledge of the target speciesʼ ecological requirements is obligatory, including habitat selection, feeding ecology as well as spatial behaviour such as movements within and between patches of suitable habitat. Yet, big knowledge gaps exist for many marshland birds which is particularly true for highly secretive species such as rails and crakes. Considered as the least known among the Palaearctic breeding birds, most information about the Baillon's Crake Zapornia pusilla is only anecdotic, resulting in strong uncertainties with regard to the species' distribution, population sizes, status, migratory behaviour as well as ecological requirements. This can be mainly attributed to the species' skulking behaviour and its seemingly highly erratic occurrence. Baillon's Crakes in the Western Palaearctic and Palaeotropics are referred to as the subspecies Z. p. intermedia. While European breeding birds are assumed to winter in sub-Saharan wetlands, African populations are considered rather to be itinerant with local movements induced by seasonal or anthropogenic habitat changes. However, for both migratory movements, major directions or routes are unknown. The discovery of a large number of Baillon's Crakes presumably wintering in the floodplains of the Parc National des Oiseaux du Djoudj (PNOD), situated in the Senegal River Delta, WAfrica, initiated this thesis. The main aim of the study was, firstly, to clarify the status and size of this population and assess its connectivity to European breeding population(s). Secondly, in order to improve the knowledge about the species' ecological requirements as a basis for the National Parks conservation management, habitat selection, spatial behaviour as well as dietary selectivity were investigated. The major part of the fieldwork was performed in PNOD in the course of the dry season during periods of 1.5 - 2.5 months from December - March 2009, 2010 and 2013. Baillon's Crakes were mainly caught with cage traps, ringed and common measurements were taken, including moult status. Skin tissue as well as one rectrice was sampled for DNA and stable isotope analyses. This was also done for Baillon's Crakes caught in European breeding grounds in Germany, Montenegro and Southern Spain. For dietary analyses, faecal samples were collected in PNOD in winter 2009/2010. Furthermore, some individuals were equipped with radio-transmitters to determine home range size and habitat selection. For the identification of the most relevant habitat parameters both on a population as well as on the individuals' level, we used a vegetation map based on satellite imagery covering the entire Djoudj area as well as maps generated on the basis of aerial photographs taken at two study sites.
Modulation of emotional episodic memory in humans. Evidence from event-related potential studies.
(2015)
In the dissertation, own research on the modulation of emotional episodic long-term memory, especially on recognition memory performance and encoding- and retrieval-related event-related potentials (ERPs), is presented. Three ERP studies were conducted. The first study investigated spontaneous remembering of emotional events. In the second experiment, a crossover design for memory recognition studies was tested. The third study explored the noradrenergic influences on emotional memory. Next to discussing the results in the light existing findings and concepts (natural selective attention by Bradley & Lang and neuromodulation hypothesis by McGaugh), the obtained results are put in a broader context of emotional episodic long-term memory and the possible implications for clinical research are indicated.
In this thesis an artificial enzyme cascade consisting of an ADH from Lactobacillus kefir, a CHMO from Acinetobacter sp. NCIMB 9871 and lipase A from Candida antarctica has been investigated for the biocatalytic synthesis of the bulk chemical ε-caprolactone as well as several derivatives for their direct utilization as polymer building blocks. Due to major limitations, which hamper such a biocatalytic route, the first addressed demand in this work was the improvement of the stability of the CHMO. By structure-guided engineering, distinctively improved variants concerning the resistance against oxidation as well as temperature stability without compromising the catalytic activity were successfully created. Due to the incomplete knowledge of the mechanisms that lead to thermal and/or oxidative inactivation of enzymes, this study illustrates that the selection of mutations for increased protein stability is still hard to predict. Thus, these results can serve as a basis for further stability studies on this enzyme class to give better insights into the underlying mechanisms, which determine the stability of an enzyme. Such a highly stabilized biocatalyst will pave the way for the successful use of flavin-dependent enzymes for industrial applications. A further aim of this thesis was dedicated to the second major hurdle en route to polyester precursors represented by the product inhibition and enzyme deactivation caused by ε-caprolactone, particularly at higher concentrations. To overcome this limitation, we developed an elegant solution in which the ε-caprolactone produced by the one-pot two-step enzymatic method is directly subjected to ring-opening polymerization using the unique lipase A from Candida antarctica. Applying this enzyme cascade in a whole cell biocatalysis in combination with an improved cofactor regeneration approach, the problem of product inhibition problem was efficiently solved leading to the formation of oligo-ε-caprolactone at more than 20 g/L when starting from 200 mM cyclohexanol. By a process development approach through solvent engineering it was found that biotransformations proceed much faster in an isooctane-containing biphasic solvent system when using free enzymes. Finally, the improved enzyme cascade was applied for the synthesis of chiral substrates and provided access to functionalized chiral compounds in high yields (up to >99%) and optical purities (up to >99%ee). By subsequent enzymatic enantioselective ring-opening of the enantiopure monomers, oligomeric lactones were successfully synthesized, which can be directly serve as building blocks for the polymer industry.
Background: Restorative treatment for children’s teeth is still an important aspect of dentistry. In the light of an only moderate caries decline in the primary dentition and a persistently low care index in Germany during the past years [DAJ 2010], there is still a demand for further work on recent patterns and outcomes of restorative treatments in primary teeth placed in everyday practices under the Germany National Health System. Objectives: The present study aimed firstly to describe the prevalence of caries and restorations in the primary teeth in Berlin and Germany from the representative Germany surveys [DAJ 2010], secondly, to describe the frequency and distribution of restorative treatment in primary teeth performed in everyday dental practice in Berlin including children age groups from 1- to 13-years of age, thirdly, to evaluate the outcomes of restorative treatment performed in everyday dental practices in these children and finally to compare results of the present study with data from the German National Health System [KZBV 2011] and randomized community data on the longevity of restorations in primary teeth in Denmark [Qvist et al. 2010a]. Material and Methodology: In the first part of present study data from representative German surveys [DAJ 2010] were interpreted to describe and compare the prevalence of caries and restorations in the primary teeth in Berlin and Germany. For the second and third parts data generated from German National Health System in Berlin (KZV-Berlin) on fillings done in everyday practices in primary teeth of 1- to 13-year-olds during 2010/2011 were collected. This data included: distribution of children with dental treatment regardless of the type of intervention provided, of children who received restorative treatments in primary teeth during dental care visits including total number of fillings per child, the number of filled tooth surfaces, retreatment with another filling, stainless steel crowns, pulp involvement and extractions after prior filling therapy. Information on the age of the original fillings at the time of retreatment was also included. The collected data then were entered into a data base for descriptive and analytical analysis. The results were compared with equivalent data from the German National Health System [KZBV 2011] and randomized community data from Denmark [Qvist et al. 2010a]. Results: Result showed a high similarity in patterns of caries and restorative treatment in primary teeth in Berlin and all of Germany as reported in the representative German surveys [DAJ 2010]. About of 84% of 1-13-year-olds insured in the German National Health System in Berlin received dental care during 2010/2011, with considerably lower rates in very young children. Fillings in primary teeth were performed in 31.17% of all children attending the dentist. Most restorations were placed in 5-8-year-olds. In 1-13-year-olds mostly just one filling was placed, more than five fillings were per child were recorded on average for very young age groups (1-4-year-olds). 55.60% of all fillings in primary teeth were two-surface restorations, whereas more than three-surface restorations comprised 6.17% of all fillings and they were performed most frequently in young children of 1-4-years of age. Retreatment to fillings in primary teeth was 7.66% of fillings placed in 1-13-year-olds. Most retreatments took place from 5 to 9 years of age with a peak in 6-year-olds. In 1-3-year-old children fillings showed shorter mean age at the time of retreatment compared to 7-year-olds and above. Retreatment of fillings in primary teeth by stainless steel crowns was very limited with only 5.16% of all retreatments and it was preferred in children from 3 to 7 years of age. The retreatment with pulp involvement was 11.27% of all retreatments. Extractions were almost as often as retreatment as another filling (ratio 4:5), but they were preferred in older children due to the course of exfoliation. Conclusions: Under the conditions of this retrospective study, the restorative treatment with fillings performed within the National Health System in primary teeth in Berlin was very successful with low rates of retreatment and the fillings shows comparable results to data on the longevity of restorations in primary teeth in Denmark. The study highlighted the need to a structured program for prevention in primary teeth, especially for very young children with high caries activity and possibly also different treatment structures with specialized dentists in this field who can perform oral rehabilitations with pulpotomies and stainless steel crowns.
The realistic description of the physical processes in quantum optical systems requires careful investigation of the interplay between quantum dissipation and entanglement generation. In this thesis, we have considered from a microscopical perspective the entanglement generation in semiconductor microcavities at short times, the dissipative evolution of the quantum harmonic oscillator towards a stationary state, and the nonclassical properties of the asymptotic states of different photonic systems. In our description of two-dimensional semiconductor microcavities we showed that two different pump configurations can be used to stimulate parametric scattering processes between polaritons that lead to the generation of internal polariton entanglement. A moving polariton induces an ultrafast electric polarisation as a source of light that serves as a probe of the internal entanglement properties. The identification of the nonclassical correlations of the emitted photons is based on entanglement witnesses that can also be used for the quantification of entanglement, e.g., in terms of the Schmidt number. The simultaneous creation of multiple branch entangled photon pairs renders it possible to generate an arbitrary number of entangled qubit states. By adjusting the number of pump beams and their spectral properties, one can optimize the Bell-type correlations within one ore more of those entangled qubits. Quantum dissipation can be studied in a microscopic setting with the well known model of a central oscillator coupled linearly to a bath of harmonic oscillators. We showed that equilibration of the central oscillator is the generic behaviour, which is prevented only in situations in which the classical oscillator equation of motion possesses undamped oscillatory solutions. Because of its localised spectral function, the infinite linear harmonic chain is an example for this behaviour. Thermalisation of the central oscillator depends on additional conditions. Equipartition of kinetic and potential energies requires the weak damping limit but is independent on the initial condition. The initial bath preparation enters the asymptotic temperature. Essential for the thermalisation of several oscillators is, that the asymptotic temperature is independent of the central oscillator frequency, which is fulfilled if the initial bath energy distribution matches that of a thermal state. Nevertheless, because this condition involves the sum of kinetic and potential energy, full thermalisation is possible in environments with nonthermal individual energy distributions, even in those far from thermal equilibrium. We showed, that even in the absence of full thermalisation the fluctuations of the central oscillator follow a generalised fluctuation dissipation theorem that reduces to the well known thermal result whenever the central oscillator thermalises in the strict sense. Photonic systems such as two-level emitters in a cavity or semiconductor microcavities are employed in quantum optics applications. The realistic theoretical description of the physical processes requires the use of methods from quantum optics as well as fromthe field of quantum dissipation. Our focus was on the correct theoretical description of the emission from systems with strong coupling. The analysis of the light generated by emitters in a cavity reveals a non-trivial dependence of the photon statistics on the light-matter coupling and temperature. Clearly identifiable parameters regimes with sub- and super-Poissonian photon statistics appear at strong and ultrastrong coupling, and lie immediately next to each other. We provided an approximate rule to relate the emission characteristics for a single emitter to those obtained for few emitters under an appropriate scaling of the emitter-cavity coupling. In accordance with this rule, the generation of noncassical light is easier with more emitters. The outright failure of the quantum optical master equation at predicting any of the features observed in the emission statistics shows that using the correct master equation is essential in all situations. Including internal dissipation channels we showed that a continuously driven semiconductor microcavity generates entangled light even at infinitely large times. The entanglement generation is thus robust against decoherence under realistic experimental conditions. Because the pair correlations between polaritons can sustain over long times and distances in these solid-state devices, a microcavity is a highly efficient source of entangled light and therefore well suited for quantum optics applications.
In holometabolic insects, senescence starts at sexual maturation and condition diminishes with age. Young virgin males should gain the highest mating success. Although sperm quality and quantity typically decreases with age, older males have been shown to have a higher mating success in a variety of insect taxa. Life-history theory predicts an increased aggressive and persistent courtship behaviour, due to a decrease of the residual reproductive value and thus, the opportunity for future reproduction. In the butterfly Bicyclus anynana, older males gain up to a 4x higher mating success despite a poorer condition, compared to younger males. As older males were found to court more often and for longer time bouts,suggesting a higher intrinsic motivation, there is evidence for the residual reproductive value hypothesis. On the other hand, an age-specific variation of male sex pheromones may provide females with information, being helpful to chose specific males. The latter could be males which have proven a high fitness in terms of survival, thus essentially reflecting a “good genes" hypothesis. This doctoral thesis investigated the reasons underlying old male mating advantage in B. anynana. The first study tested whether old male mating advantage prevails, even if females were unable to distinguish between older and younger males. The results were backed up by examining female rejection rates, male courtship frequency, courtship duration, time to copulation and mating duration. Older males had a significantly higher mating success compared to younger ones regardless of differences in pheromone blends or the females ability to smell. Older males courted more often and longer. The results support the residual reproductive value hypothesis. Study 2 investigated post-copulatory sexual selection in B. anynana. Females were double-mated, allowing for sperm competition and cryptic mate choice. Older males had a higher paternity success than younger ones, when the former were the last mating partner. The paternity success was balanced across age classes when older males were the first mating partner. Older males transferred larger spermatophores with higher numbers of eupyrene sperm than younger males. B. anynana does not exhibit cryptic mate choice and last-male precedence is the most probable fertilization pattern. The higher proportion of offspring sired by older males is due to significantly increased numbers of fertile sperm compared to younger males. The latter are clearly disadvantaged, as the higher sperm numbers provided by older males counteract the benefits of last-male precedence. Study 3 explored determinants of mating success in B. anynana. Successful males had longer wings, a heavier thorax, a lighter abdomen, a higher fat content, and higher phenoloxidase expression levels. Mating success seemed to be directly linked to proxies of flight performance. Successful males showed a better flight performance, in turn increasing mating success. As energy reserves are of crucial importance for flight manoeuvres, they may play a significant role in male mating success. Study 4 tested the effects of male age and mating number on spermatophore mass, sperm number, male oxidative status, and reproductive success by manipulating age and mating frequency in male B. anynana. Spermatophore mass and sperm numbers increased significantly with age, while antioxidant defences and oxidative damage declined. Female fecundity and egg-hatching success was highest when being mated with young virgin males. Antioxidant defences decreased with age, being a possible reason for the negatively affected reproductive success in females. Ejaculate quality diminished with age and mating number, despite larger spermatophores and higher sperm numbers being found in older males. Therefore, spermatophore size and sperm numbers can not be considered as reliable proxies of male condition. The final study proofed whether male sex pheromone comprise honest signals and which traits might be associated with increased pheromone titres. Pheromone titres were analysed among successful and unsuccessful males when being mated with either a control or a scent-blocked female. Both groups did not differ in pheromone levels. Successful males had significantly higher numbers of eupyrene sperm. No correlation between male pheromones and any investigated trait was found, suggesting that pheromone titres do not provide reliable information on male quality. Nothing indicates that male sex pheromones in B. anynana play a decisive role in female mate choice. Successful males generally have a better body condition, resulting in a more vigorous courtship behaviour and higher sperm numbers. Hence, variation in body condition rather than pheromone titres is more likely to determine male mating success. Mating decisions are primarily driven by male behaviour. The results suggest that old male mating advantage arises from sexual conflict.
Because heavy metal ions prefer to bind sulfur, inspired by molybdopterin the main goal of this work was combining dithiolene binding moieties with optically active substituents with the aim to detect/capture metal ions, which could preferably bind to the dithiolene moiety of for instance MPT. Therefore a number of dithiolene based molecules mimicking the natural immediate coordination sphere composition of Mo and W dependent oxidoreductase enzymes were synthesized and characterized by NMR, MS, IR, X-ray crystallography, UV-Vis, EPR and electrochemical methods. In order to work at the lowest possible base concentration due to potentially base sensitive substituents and reaction partners, the procedure for the de-protection of the ligand precursors and the in situ complexation reaction was first optimized in course of the work and interim we explored the surprising fact that the ring opening reaction of the 1,3- dithiol-2-one system is fully reversible and can be controlled simply by adjusting the pH-value of the solution. Then, the coordination behavior of the de-protected ligands towards different metal ions, including biologically relevant ions like Cu+, Cu2+, Fe3+ was tested. As the optically active substituents necessarily possess interesting electronic properties, a second focus of this work was to utilize the developed ligand systems for MoCo and WCo models and to investigate their potential catalytic activity in the model oxotransfer reaction between DMSO and PPh3 in order to evaluate the substituent’s effect on the dithiolene binding moiety.
The immune system of all vertebrates primarily is responsible to maintain the organisms homeostasis by either eliminating neoplastic or altered body cells and to protect against foreign invaders (viruses, bacteria, fungi, parasites) (Murphy 2012). It is a highly regulated network of innate and adaptive mechanisms between humoral factors and leukocytes. The successful elimination or protection is crucially based on differentiation of self from non-self. Pathogens and altered body cells are recognized by different receptor complexes on immune cells. Expressed pathogen- or danger-associated molecular patterns (PAMPs or DAMPs, respectively) are bound by pattern recognition receptors (PRR) (Takeuchi and Akira 2010). Missing major histocompatibility (MHC) class I molecules or non-self (e.g. allogeneic or xenogeneic cells) MHC are recognized by natural killer cell receptors (Fischer, Koppang and Nakanishi 2013, Raulet 2006). Foreign non-self peptides are presented through MHC class I (intracellular) or through MHC class II (extracellular) to B- cell or T cell receptor complexes. This initial activation is regulated by humoral factors or cellular interactions (receptor-ligand interactions) resulting in the activation, proliferation and effector function within an immune response. Some of the cellular receptors are permanently expressed on all leukocytes on a high level (MHC class I), whereas others only are expressed during certain developmental or activation stages or on certain leukocyte populations (monocytes, granulocytes, NK cells, lymphocytes) (Murphy 2012, Biosciences 2010). For different mammals (man, mouse, rat, but also swine, cattle, dog), a system of characterized leukocyte surface molecules primarily based on the recognition of these molecules by specific monoclonal antibodies (mabs) was summarized at international workshops as clusters of differentiation (CD) (Cobbold and Metcalfe 1994, Hopkins, Ross and Dutia 1993, Haverson et al. 2001, Mason et al. 2001). Using these mabs, it is not only possible to characterize the developmental and functional stage of different leukocyte subpopulations but also to define the interactions between these populations. For bony fish, such a system does not exist. Only a limited number of mabs against leukocyte surface molecules is available and most of them are strongly specific for species (Köllner et al. 2004, Köllner et al. 2001, Zhang et al. 2010, Ramirez-Gomez et al. 2012, Wen et al. 2011, DeLuca, Wilson and Warr 1983, Toda et al. 2011, Toda et al. 2009, Takizawa et al. 2011a, Hetland et al. 2010, Araki et al. 2008). The goal of this PhD work, therefore, was to develop monoclonal antibodies against surface markers of rainbow trout (Oncorhynchus mykiss) T cell population (chapter 2). The lymphocytes are characterized by the expression of a T cell receptor complex composed of TCR chains (α and β) and CD3 chains (α, β, γ, δ, ε and ζ). Cytotoxic T lymphocytes (CTLs) binds to MHC class I bound peptide on the infected host cell using their T cell receptor (TCR) and its co-receptor CD8 resulting in specific killing. Th cells recognize peptides through their T cell receptor (TCR) and their co-receptor CD4 after extracellular antigens uptake, processing and presentation via MHC class II by professional antigen presenting cells (macrophages, dendritic cells and B cells). During recent years, genes encoding MHC class I and II, TCR and their co-receptors CD8 and CD4 have been cloned in several fish species and antibodies have been developed to study protein expression in morphological and functional contexts. However, mabs specific for TCR or CD3 have not been established yet. Therefore, using pan-T cell marker specific mabs, the activation and kinetics of T cell subpopulation should be investigated (chapter 2). Moreover, a flow cytometry method was established using different lineage marker specific mabs to measure different leukocyte populations and their involvement in immune mechanisms of trout using a single tube assay (chapter 3). The first line of defense against altered body cells or pathogens is provided by evolutionarily ancient macrophages and natural killer (NK) cells. These innate mechanisms are well developed in bony fish. Two types of NK cell homologues have been described in fish: non-specific cytotoxic cells and NK-like cells (Shen et al. 2002, Shen et al. 2003, Shen et al. 2004, Fischer et al. 2013). Functional assays for innate and adaptive lymphocyte responses have been developed in only a few fish species. However, there are no tools available until now in trout to follow these cells directly in the immune response. The molecular characteristics and the expression on leukocyte subpopulations of CD56 were therefore analyzed. Furthermore, a mab that is specific for a molecule expressed only in NK cells but with uncommon expression kinetics was established (chapter 4). Overall, the established tools and methods allow a more detailed characterization of cellular immune mechanisms against intracellular pathogens in rainbow trout.
Dwarf spiders (Linyphiidae, Erigoninae) are especially suitable for sexual selection research as many of them exhibit sexual dimorphism, with males possessing modified prosomata. In those species that have been investigated in detail the modified structures are equipped with a glandular tissue that produces secretions, which the females contact and take up during courtship/copulation. The time of secretion release, and refilling of the reservoirs was analysed on an ultrastructural level in male Oedothorax retusus. The results suggest that the main function of the secretions is gustatorial courtship and not the emission of volatile pheromones for mate attraction. Mating decisions and reproductive success are influenced by secondary sexual traits that evolved under sexual selection. However, an individual´s nutritional status is also important for mate choice. Since spiders are regularly exposed to limited prey availability, adult feeding status can be considered an important component of spider mating behaviour. In order to test for the effects of dietary restriction, females of the closely related species O. retusus and O. apicatus were subject to a short period of food shortage. The effects of low- (LD) vs. high-diet (HD) treatment on courtship, mating probability and behaviour, and reproduction were analysed. We found that short phases of diet restriction as adults have a high impact on copulation and reproduction in the two dwarf spider species. Whenever females mate with more than one male, and sperm is stored prior to fertilization, males may suffer from sperm competition. Mating plugs that block the female genital openings after mating are a male strategy to avoid sperm competition. Although mating plugs occur in many species, their function and origin has hardly been investigated. O. retusus males transfer amorphous material onto the female genitalia during mating. We investigated the location of plug production using x-ray microtomography (μCT) as well as light and transmission electron microscopy (TEM). Furthermore, we asked whether males are limited in the production of the amorphous plug material in successive matings. The plug material is produced in a gland inside the male pedipalp and stored close to the blind end of the sperm storage compartment. The size of the first plug a male produced significantly influenced the size of subsequent plugs. Obviously, males do not possess unlimited amounts of plug material in a certain period, which may severely limit their ability to secure paternity through subsequent mating plugs. Even though mating plugs seem to be an obvious means to secure paternity, their potential in securing paternity depends on their mechanical efficacy and persistence. Consequently, the influence of the size of the plug material (mating duration as a proxy) and the age of the mating plug (time interval between successive copulations) on its efficacy was investigated. Small and fresh plugs were least effective, whereas large plugs were highly effective. We were able to show that mating plugs in O. retusus are a powerful mechanical safeguard whose efficacy varies with plug size and age. Genitalia in animals with internal fertilization are complex, species-specific, and underlie rapid evolution. In spiders, male and female genitalia are paired, and have to interact during mating, which results in an even higher complexity. Pedipalps (transformed pair of legs) in male spiders are used as secondary sperm transfer organs that are not directly connected to the gonads. Due to the high complexity of male pedipalps, it has been taken for granted that pedipalps are side specific and cannot be used flexibly into either female copulatory opening. We investigated potential flexible pedipalp use in O. retusus. Our findings demonstrate a flexible insertion mode in a dwarf spider with complex pedipalps but relatively simple female genitalia. Our findings corroborate sexual selection as the selective regime for the evolution of complex and diverse genitalia. The results of this thesis show how complex sexual selection acts in the dwarf spiders O. retusus and O. apicatus. It shapes the evolution of male and female genitalia, affects mate choice (pre- and postcopulatory), mating behaviour, and influences mating success and reproduction. All these factors and traits affect an individual´s evolutionary fitness, and their interactions help to understand how sexual selection acts.
In the last decade a new domain has developed in plasma physics: plasma medicine. Despite the successes that have already been achieved in this exciting new field, the interaction of plasmas with “biological materials” is not yet fully understood. Further investigations in particular with respect to the properties of the applied plasmas sources are therefore essential in order to decode this complex interaction process. Currently, a great variety of different discharge types are used in plasma medical investigation which are generally are operated in noble gases like helium and argon or with dry air. In the present work, the main focuses is on the diagnostics of reactive oxygen and nitrogen species (RONS) resulting from the plasma chemistry of an argon radio-frequency (RF) atmospheric pressure plasma jet (APPJ) and its interaction with the ambient atmosphere. To conduct this study, a commercially available plasma device, so-called kinpen is used due to its technical development maturity and its accessibility on the market. As a method of choice, diagnostic techniques are based on optical spectroscopy known to be a reliable tool to investigate plasmas. Consequently, three complementary optical laser diagnostics, namely quantum cascade laser absorption spectroscopy (QCLAS), laser induced fluorescence (LIF) and planar single shot LIF (PLIF), have been successfully applied to the plasma jet itself or its effluent. All of these diagnostics offer a high species selectivity and an excellent spatial and temporal resolution. They are used in this work for i) the characterization of the plasma chemical dynamics with respect to the generation of biological active RONS – in particular for the case of N2 and O2 admixtures. ii) the measurement of the NO density profile in the plasma effluent iii) the investigation of the flow characteristics of the neutral gas component (laminar vs. turbulent) and its influence on the plasma chemistry. Numerical analysis have been carried out in collaboration with PLASMANT (University of Antwerp) via kinetic simulations of the entire plasma chemistry. Expectingly, atomic oxygen (O) and nitric oxide (NO) turn out to be precursors of ozone (O3) and nitric dioxide (NO2). However, it was intriguing to unveil that atomic oxygen and nitrogen metastable (N2(A)) play together a key part --as intermediate species-- in the generation of more stable RONS, e.g. NO. The absolute density of NO space resolved was measured by LIF and absolutely calibrated molecular beam mass spectrometer. LIF was used to determine relative density of OH radical in the plasma plume. 2D-LIF was used to investigate the gas flow pattern with OH as a flow tracer. The results are discussed in details and show different operating mode of the jet, e.g. laminar or turbulent and that the plasma influences these regimes. The first detection and relative measurement by LIF of nitrogen metastable (N2(A)) produced by an argon APPJ is also shortly reported in this work. The outcome of this thesis will bring new insights in the field of argon APPJs chemistry and its interaction with the ambient atmosphere which can be valuable to support plasma modelling and to consider for the applications in plasma medicine.
Compared to gun control legislation in Germany, which is supposed to be one of the most stringent in Europe, gun control legislation in Vietnam is by far stricter. Private possession of guns is not possible in Vietnam. One key point in the German weapons act is the allowance for certain facilitations for airguns that impart kinetic energy of less than 7.5 J to the projectile. These airguns are freely available for purchase by persons 18 years of age or older. The 7.5 J limit is applied to airguns without further efinition of projectile characteristics like projectile head, projectile shape or projectile mass. In the course of a possible relaxation of gun control and facilitation of private gun ownership (especially of airguns) in Vietnam, an implementation of a kinetic energy limit, similar to the German 7.5 J limit, is conceivable. It was the aim of this cumulative doctoral thesis to investigate if this energy limit was a sufficient threshold to estimate the dangerousness of a weapon or projectile, especially in cases where the characteristics of the projectiles are fundamentally different from the “standard” projectiles which were basis for the implementation of this energy threshold in the German weapons act in 1968. The first study investigated basic ballistic parameters of plastic-sleeved composite projectiles in comparison to standard diabolo pellets. Although overall results were inconsistent, for some projectile–weapon combinations (particularly for spring-piston air guns), a significant change of the kinetic energy (− 53 up to + 48 %) to the reference projectile was observed. For some projectile types the legal limit of 7.5 J was exceeded by far. The second study focused on an uncommon discarding sabot airgun projectile (SUSSEX SABO). It was demonstrated, that the sabot principle works properly in high power airguns (E > 17 J), but separation of the core projectile from the sabot cup was also observed in mid- (E = 12.5 J) and low-energy (E < 7.5 J) airguns. While muzzle velocity and kinetic energy values of discarded sabot projectiles are comparable to conventional diabolo pellets, energy density (ED) and penetration capacity are significantly higher. Finally, the ballistic performance of a carbon dioxide-actuated arrow pistol (Arcus Arrowstar) was investigated. Compared to conventional diabolo pellets of a similar kinetic energy level, the penetration depth of this arrow projectile was increased by approximately 35 %. This high penetration capacity was mainly caused by the uncommon projectile characteristics (high cross-sectional density q and pointed arrow head). The findings of this work reveal that special projectile types, like the plastic-sleeved composite pellets, might substantially increase the muzzle energy of airguns. Other uncommon projectile types (like the SUSSEX SABO projectile or the Arcus Arrowstar projectile) exert a higher penetration capacity whereas kinetic energy is similar to standard diabolo pellets and is still beneath the legal limit. For these uncommon projectile types, the 7.5 J limit implemented in the German weapons act is not a sufficient threshold. As demonstrated, next to kinetic energy E and energy density ED, the characteristics of the projectile influence their ballistic parameters. So it is strongly recommended to specify legal kinetic energy limits in gun control legislation in greater detail. The design characteristics of the projectiles (cross-sectional density q and design of the projectile head) should be appropriately taken into consideration.
All-embracing human activities have transformed one-third to one-half of the Earth’s land surface. There is a strong correlation of human well-being with ecosystem function, including poverty alleviation programs as well as enhancements of the health sector. To assess and evaluate the progress and outcome of initiatives stringent periodic observation is necessary. The presented approach combines the strengths of remote sensing and GIS analysis with social research applications. The Bach Ma National Park as an area under investigation was designated as protected area in 1991 and extended in 2008. The national park is uninhabited, but in the surrounding buffer zones approximately 62000 to 79000 people live in rural areas and in mostly impoverished conditions. The comprehensive nature conservation efforts of the Vietnamese Government during the last two decades has led to growing forest coverage of both plantation and natural forests. Nevertheless, the decreasing biodiversity and ongoing illegal logging and hunting activities in the national park are seen as major threats to conservation initiatives in the future. The remote sensing component consists of an analysis of a time series of Landsat images with seven steps ranging from 1973 to 2010. The resulting land cover analysis had 13 different classes. The accuracy assessment revealed an overall accuracy ranging from 84 to 90%. The basis for the second monitoring component was the Landsat images. A total of 25 different landscape metrics on the landscape, class, and patch level were calculated by FRAGSTATS. The third monitoring component is itself divided into two parts. This part consists of a qualitative social research study with 26 expert interviews. The second part consists of 61 standardized questionnaires and an evaluation by SPSS. The assessment reveals a more or less stable forest cover, but with a considerable degradation process during the last four decades. Urban areas outside of the national park have increased in size considerably. For dense and medium forest patches an increasing fragmentation and isolation of patches was observed. Patches of natural forests and habitats of thousands of species have declined dramatically, a trend that is related to a decreasing core area characterised by its undisturbed conditions. The Landsat images and landscape metrics reveal the major differences between the national park and surrounding areas. Despite extensive alterations near the border, remaining forest patches in the national park are still bigger and less fragmented. Nevertheless, the third monitoring component revealed undiscovered changes in the forest beyond the possibilities of used images and metrics. It includes illegal logging and hunting activities. Non-timber forest products are similar to faunistic species collected for both the subsistence of the local residents and associated markets as important sources of income. Based on this bisection, local residents as well as certain strangers are responsible for the activities in the forest. The plan of national park management is to intensify existing monitoring and patrolling in the forest to limit the exploitation and impact in relevant zones. Furthermore, the importance of a network of protected areas has attracted increasing attention. The assessment of the questionnaires reveals that deforestation and also reforestation were the key aspects of historical land cover change. Additionally, for the local residents the conversion of forests into arable land as income alternative is of major importance. Capacity development is not only one priority of the Bach Ma management but also of the international community for all of Vietnam. The tourism industry, one of the most promising opportunities of recent years, stands to support both national park management as well as the local residents. For local residents the extraction of non-timber forest products is an essential portion of the income. The current pilot policy 126/QD-TTg in the extension zone of the national park and research on an appropriate sharing mechanism is of the utmost importance. The established and presented monitoring components are cost-effective and can be used to regularly assess the land cover change of a protected area. They can be implemented together or individually into existing monitoring schemes. A smart combination of pre-existing datasets is necessary to overcome the inconsequential amount of money for monitoring procedures. Supplemented by socio-economic monitoring and the demands as well as impacts of human activity need to be integrated. These extensive requirements for prospective monitoring are only feasible with comprehensive and reliable collaborations.
A slice is an intersection of a hyperplane and a self-similar set. The main purpose of this work is the mathematical description of slices. A suitable tool to describe slices are branching dynamical systems. Such systems are a generalisation of ordinary discrete dynamical systems for multivalued maps. Simple examples are systems arising from Bernoulli convolutions and beta-representations. The connection between orbits of branching dynamical systems and slices is demsonstrated and conditions are derived under which the geometry of a slice can be computed. A number of interesting 2-d and 3-d slices through 3-d and 4-d fractals is discussed.
Although End Stage Renal Disease (ESRD) is a disease of increasing epidemiological relevance very little is known about the cost of providing the respective dialysis services in Tanzania. This study analyses the cost of outpatient dialysis at Muhimbili National Hospital (MNH) in Tanzania in the year 2014 in order to address the question weather or not dialysis treatment should be a priority intervention in a poor resource country like Tanzania. Cost analyses were performed based on the provider’s perspective including only direct costs of dialysis treatment. Cost of drugs and consumables were obtained from the price list of Medical Stores Department in Tanzania. Overhead were collected from the respective departments and allocated to the final cost centres through step down approach. The results indicates that MNH performs on average 442 hemodialyses per month (34 patients, with three sessions per week) with a personnel placement of 20 nurses, four nephrologists, eight registrars, one nutritionist, two biomedical engineers, four health attendants and nine dialysis machines. The respective average unit cost per haemodialysis is 175.91 US$. Consequently, an average patient requiring three dialyses per week (i.e. 156 dialyses per year) will cause annual costs of 27,441.95 US$. The annual cost of dialysis is enormous for a least developed country like Tanzania where resources and technology are rather limited. Infectious diseases (such as malaria and tuberculosis) are the major health problems. Therefore, from the economic point of view, it seems rational to allocate health care budgets towards diseases that are curable, have higher cost- effectiveness and cater for the majority of the population. However, before a final decision on allocation of budget towards dialysis is made, all efforts that could improve technical efficiency and reduce the costs of materials in Tanzania must be invested. For instance, reducing the nursing time per dialysis.
Structure– and sequence–function relationships in (S)-amine transaminases and related enzymes
(2015)
Chiral primary amines are valuable building blocks for many biologically active compounds. Environmentally friendlier alternatives to the classical methods for α-chiral primary amine synthesis are highly desired. A biocatalytic alternative that recently proved beneficial for industrial applications is asymmetric synthesis utilising (S)-selective amine transaminases (S-ATAs). These enzymes can be utilized to transaminate a prochiral ketone with an amino donor (e.g. isopropylamine), to achieve a chiral amine and a carbonyl product (e.g. acetone). However, for several potential applications protein engineering is required to fit (S)-ATAS to the demands of an industrial process. Since no (S)-ATA crystal structure required for understanding the substrate recognition and thus protein engineering was available, we first aimed at obtaining structural data. Instead of solving crystal structures ourselves, we took advantage of structural genomics projects and discovered, that the protein data bank (PDB) already contained crystal structures of four enzymes with unknown function that we hypothesised to possess (S)-ATA activity. After developing a screening method, the four enzymes could be characterized as ω-amino acid:pyruvate transaminases (ωAA:pyr TAs). (S)-amine conversion was suggested to be a ‘substrate-promiscuous’ activity of these enzymes, as it is pronounced differently in the four investigated ones. By comparing the active sites of the highly and poorly active (S)-ATAs, the residues that determine the ability of amine conversion in these enzymes were discovered. Furthermore, the mechanism for dual substrate recognition, the binding of both, carboxyl and bulky hydrophobic substrates in the same active site, could be elucidated with the crystal structures. A flexible arginine side chain is able to adopt various positions thus enabling carboxylate binding and by ‘flipping’ out of the active site, to create space for amine binding. Then, a limitation of these enzymes, the restricted substrate scope caused by a small binding pocket was addressed. First, a rational protein engineering approach was set up to create more space. The tested mutations, however, destroyed most of the activity for both regular and more bulky substrates. We thus learned that the structural requirements for (S)-ATA activity are more complex than initially anticipated and a semi-rational approach was applied to broaden the substrate scope. By systematic saturation of active site positions, substantially improved mutants for bulkier amine synthesis could be obtained. As this study highlighted a lack of understanding of (S)-ATA, the functional important residues in the enzymes belonging to the class III TA family were surveyed. This family is defined by common sequence and structure features and besides (S)-ATAs mainly comprises TAs of various substrate scopes but also a few phospholyases, racemases and decarboxylases. To enable the comparison of active site residues among them, a commercial bioinformatics tool was used to create a family wide structure-based alignment of around 13,000 sequences. Based on statistical analyses of this alignment, structural inspections and literature evaluation, active site residues crucial for certain specificities within this family have been identified. By investigating the ingenious active site designs that enable such a plethora of reactions, and by identifying sets of functional important residues termed ‘active site fingerprints’, the understanding of catalysis in this enzyme family could be broadened. Furthermore, these functional important residues can on the one hand be applied to predict the specificity of uncharacterised enzymes, if a fingerprint is matched. On the other hand, if no fingerprint is matched, they can help to discover yet unknown activities or mechanisms to achieve a known specificity. We exemplified the latter case by functionally characterising a Bacillus anthracis enzyme with the crystal structure 3N5M, whose substrate specificity was unknown and could not be predicted. The 3N5M enzyme was found to possess ωAA:pyr TA and (S)-ATA activity even though it lacks the above-mentioned ‘flipping’ arginine. Based on molecular dynamics simulations we were able to propose an alternative mechanism for dual substrate recognition in the B. anthracis ωAA:pyr TA. By these findings the understanding of the requirements for (S)-ATA activity could be further broadened and a functional knowledge gap within the class III TA family was closed. The active site residue composition in 3N5M is now connected to enzymatic function and may be applied for future specificity predictions.
The following work is describing the development of two innovative biosensors for the detection of biologically relevant molecules in the field of ecology and medical diagnostics. Biosensors have the particularity to possess a biological partner which recognizes the target molecule and a physical detection method responsible for the transformation of this biological interaction into measurable information. In the present case, both biosensors are designed following the same strategy and use a recombinant produced human receptor as biological partner and the surface plasmon resonance (SPR) technique to transform the biological interaction in quantitative information. The progesterone biosensor is aimed to detect and quantify substances with affinity to the human progesterone receptor. The recent discoveries that some chemicals present in low quantities in the ecosystem called endocrine disrupting chemicals (EDCs) have a negative impact on the aquatic life fitness raised concerns about the effects of these same molecules to the human health. In order to assess the effects of these EDCs, the use of classical analytical detection methods like high performance liquid chromatography (HPLC) or gas chromatography (GC) is not sufficient as these techniques only quantify a defined molecule without giving information about its biological activity. By integrating a recombinant human progesterone receptor, the progesterone biosensor can determine the biological activity of an unknown molecule or of a mixture of molecules in a real sample. In this work, two different yeasts – one methylotrophic (Hansenula polymorpha) and one non-methylotrophic (Arxula adeninivorans) - were selected as host for the recombinant protein production and their performances were compared. Different purification strategies were assayed and the binding activity of the purified progesterone receptor was then confirmed by enzyme like receptor assay (ELRA) and SPR. This led to the design of a first version of the biosensor with the immobilization of a progesterone-BSA ligand to the surface of a SPR chip and the use of a progesterone receptor mixed with the target molecule as sample. This competitive assay format was successfully utilized with a commercial progesterone-BSA ligand as target molecule and the next step will be the adaptation of this biosensor for real samples measurements. The HER-2 biosensor was developed as an answer for one of the most critical issue in the field of breast cancer diagnostics. In approximately 30 % of cancer cases, the transmembrane protein HER-2 can be found in large amount at the surface of the carcinoma cells and these cases are known to be particularly aggressive. Based on the amount of HER-2 protein at the surface of the cells, the pathologists established a scale with four levels to adapt the treatment to each patient. Although effective therapies have been developed to treat the HER-2 positive breast cancer, one of the major challenges remains the classification of breast sample in this scale as the only accepted determination methods are immunohistochemistry (IHC) and fluorescent in situ hybridization (FISH) which are only qualitative. In this work, a biosensor has been designed to quantify the amount of the HER-2 protein in a crude cell extract from a breast cancer tissue sample. To achieve this, the strategy is to utilize an antibody specifically targeted against the HER-2 protein and bound to a SPR chip. As the development of this biosensor necessitated the use of large amount of purified HER-2 protein, it was decided to produce recombinant full-length HER-2 in two different yeasts and to purify it by chromatography. This recombinant protein production required particular attention due to the membrane localization of HER-2. The structural integrity of the recombinant protein was confirmed by Western Blot and ELISA and different antibodies were bound to SPR chips in order to detect the HER-2 protein. After finding the conditions giving an optimal SPR signal, a protocol was developed to extract native HER-2 from breast tissue sample and the biosensor was assayed with this crude cell extract.
The collisionless tearing mode is investigated by means of the delta-f PIC code EUTERPE solving the gyrokinetic equation. In this thesis the first simulations of electromagnetic non-ideal MHD modes in a slab geometry with EUTERPE are presented. Linear simulations are carried out in the cases of vanishing and finite temperature gradients. Both cases are benchmarked using a shooting method showing that EUTERPE simulates the linearly unstable tearing mode to a very high accuracy. In the case of finite diamagnetic effects and values of the linear stability parameter Delta of order unity analytic predictions of the linear dispersion relation are compared with simulation results. The comparison validates the analytic results in this parameter range. Nonlinear single-mode simulations are performed in the small- to medium-Delta range measuring the dependency of the saturated island half width on the equilibrium current width. The results are compared with an analytic prediction obtained with a kinetic electromagnetic model. In this thesis the first simulation results in the regime of fast nonlinear reconnection~(medium- to high-Delta range) are presented using the standard gyrokinetic equation. In this regime a nonlinear critical threshold has been found dividing the saturated mode from the super-exponential phase for medium-Delta values. This critical threshold has been proven to occur in two slab equilibria frequently used for reconnection scenarios. Either changing the width of the equilibrium current or the wave number of the most unstable mode makes the threshold apparent. Extensive parameter studies including the variation of the domain extensions as well as the equilibrium current width are dedicated to a comprehensive overview of the critical threshold in a wide range of parameters. Additionally, a second critical threshold for high-Delta equilibria has been observed. A detailed comparison between a compressible gyrofluid code and EUTERPE is carried out. The two models are compared with each other in the linear regime by measuring growth rates over wave numbers of the most unstable mode for two setups of parameters. Analytical scaling predictions of the dispersion relation relevant to the low-Delta regime are discussed. Employing nonlinear simulations of both codes the saturated island half width and oscillation frequency of the magnetic islands are compared in the small-Delta range. Both models agree very well in the limit of marginal instability and differ slightly with decreasing wave vector. Recently, the full polarisation response in the quasi-neutrality equation was implemented in EUTERPE using the Padé approximation of the full gyrokinetic polarisation term. Linear simulation results including finite ratios of ion to electron temperature are benchmarked with the dispersion relation obtained from a hybrid model. Finite temperature effects influence the saturated island width slightly with increasing ion to electron temperature ratio which has been verified by both models.
Introduction: For a successful pregnancy, a set of physiological requirements has to be fulfilled. The mother has to provide enough nutrients and the proper anatomical environment for the developing fetus and protect him and herself against pathogens. The cells of the im-mune system constantly monitor the organism in search for pathogens and mount a response to eradicate the threat. The favourable outcome of an immune response re-lays on the capacity of those cells to recognize structures that shouldn’t be present in the organism and the speed or strength at which the cells react. During pregnancy, however, a fetus is able to establish a firm contact with the endometrium of the mother and then grow for an extended period of time. This “exception to the rule” hides behind a set of fine-tuned regulations of the immune responses which are not completely un-derstood. Though many cell types have been extensively investigated in the past dec-ades, B cells play yet enigmatic roles. The aim of this work is to uncover the events occurring within the B cell development during pregnancy and to study the role of certain subtypes in healthy pregnancy and pregnancy miscarriage. Methods: For all experiments, 8-weeks-old female mice either non-pregnant, having normal preg-nancies or miscarriage were used. Organs were removed and cells isolated using standard protocols. The analysis of the population distribution was performed by Flow Cytometry. For in vitro experiments, specific cell subsets were isolated using MACS Cell Separation. Bio-plex method was used for the assessment of Immunoglobulin isotypes in serum, while CBA Array was the method used to measure cytokine levels in the supernatant of cell cultures. Statistical analysis was done using GraphPad Prism software. Results: Pregnancy had a strong impact on the murine B cell development. The restructuration of the B cell compartment could be appreciated already from the bone marrow progeni-tors, reduced in pregnant mice. Peripheral subsets drastically adapted their develop-mental pathways, with a drift towards the generation of marginal zone B cells. B cells also showed functional adaptations to gravidity, as evidenced by the changes in the immunoglobulin production and immunomodulatory capacity. Conclusions: For the first time a deep investigation of the consequences of pregnancy on the B cell development was performed, covering several aspects of B cell functionality. This work shows that B lymphocyte compartment is remodelled during pregnancy. Aberration of this process may lead to pregnancy complications including miscarriage.
Global change, amongst others characterized by increasing temperatures, altered precipitation patterns, an increase of extreme climatic events and continued atmospheric depositions of pollutants, is expected to severely impact forest ecosystems worldwide. The complex interplay between different factors acting upon tree growth, combined with regional patterns in climatic change calls for a region specific evaluation of the possible consequences on forest ecosystems. For northeastern Germany regional climate models identify a rise in temperatures and a change in precipitation patterns. Drier summers and wetter winters together with an increase in extreme weather events are seen as the most pronounced changes that will occur during the 21st century. In this thesis I analysed past growth rates and climate-growth relationships in different stands of beech (Fagus sylvatica L.) and oak (Quercus robur L.) along a gradient of decreasing precipitation in a space for time approach. Special attention was paid to the influence of summer drought, soil waterlogging and the importance of site conditions in modulating the reactions to these climatic stressors. Departing from these retrospective analyses, future growth trends are modelled for beech, oak and Scots pine (Pinus sylvestris L.), based on projections of a regional climate model until the year 2100. Furthermore, I studied the influence of sudden and extreme shifts in hydrological conditions on the growth of oaks in a drained peatland that was subject to catastrophic rewetting. All analyses of this thesis are based on ring-width and wood anatomical features applying a variety of dendrochronological methods. The gradient approach revealed similar climate-growth relationships for beech and oak on drought exposed, sandy sites, where water availability during early summer was the main growth-limiting factor for both species. Decreasing precipitation rates towards the East are associated with higher drought susceptibility, especially for beech. As a result, competitive superiority of beech over oak decreases. In a drier future the competitive balance between the two species may shift (rank reversal). During the past decades beech has shown larger interannual growth variability and a higher number of growth depressions. These changes might indicate that increasing temperatures and climatic variability are already affecting its growth patterns and climate sensitivity. This is in line with the prospective modelling approach. According to our models, growth trends will turn negative for beech and oak towards the end of the 21st century, with beech showing the highest growth reduction (23% compared to the reference period 1971-2000). For pine, modelled growth rates show only minor changes. Whereas beech and oak shared a high common signal on the dry sites, the two species differed in high frequency ring patterns on the wet sites. On poorly drained, loamy soils beech, with its superficial root system, suffered from summer droughts. In contrast, on these sites ring-width of pedunculate oak was not correlated to summer moisture conditions resulting in differing interannual ring patterns between dry and wet sites. Wet periods with high soil water saturation did not have a negative influence on the growth of either species. Such a lack of response is not surprising for oak, which is generally known as rather tolerant to soil waterlogging, but it indicates an unexpectedly high tolerance of beech to stagnating wetness. Using the natural laboratory of an oak forest that suffered a catastrophic flooding I could show that slower grown trees that had likely been suppressed displayed a higher adaptive capacity compared with bigger, dominant trees. Many of the previously dominant individuals died within 18 years after the event. Trees that survived the groundwater rise displayed a typical ring pattern: growth was suppressed for a few years, but afterwards recovered and even surpassed previous growth rates, most likely as a result of competition release. The sudden hydrological change left a clear imprint in ring patterns and wood anatomical features in both the dying and the surviving trees. This differentiated imprint may be helpful for a better interpretation of growth patterns found in subfossil bog oaks, an important climate proxy of the Holocene. The insights gained from this thesis support existing concerns about drought induced growth decline for oak, but especially for beech. Changes in precipitation patterns might lead to wetter conditions during winter, but these will likely have only little effect on growth. Both s show rather high resilience to stagnating wetness. More likely, it are extreme events like prolonged droughts or heavy rainfalls that might breach thresholds in the ability of the two species to cope with too much or too little water. Such extreme events thus pose a strong risk to the future growth performance of both oak and beech.
This thesis investigated dielectric barrier discharges (DBDs) in N2-O2 gas mixtures at atmospheric pressure, with a focus on the gas discharge physics. The main goal was to evaluate whether possible control mechanisms exist that can manipulate the breakdown and the development of DBDs, especially for pulsed operation. To examine the pre-breakdown phase, the actual breakdown and the main DBD development, DBDs in a double-sided, single filament arrangement with a 1 mm discharge gap were investigated by means of electrical and optical diagnostics with high resolutions. Spectrally- and temporally-resolved iCCD pictures (2D in space), spectrally- and spatio-temporally-resolved streak camera and CCS images (1D in space) were simultaneously recorded accompanied by a full electrical characterisation with fast voltage and current probes. Sinusoidal- and pulsed-driven DBDs were found to have a qualitatively similar spatio-temporal development, i.e. a cathode-directed ionisation front (v ~ 10^6 m/s, positive streamer mechanism), followed by a transient glow-like phase in the gap. For sinusoidal operation, the slope of the applied voltage is flat (dU/dt ~ 1 V/ns) compared to pulsed operation (dU/dt ~ 100 V/ns). Thus, during the longer pre-phase of the sine-driven DBD, many more charge carriers were generated, in contrast to the pulsed-driven DBDs, where the pre-phase is limited by the short voltage rise time. Consequently, just before the breakdown occurs, the charge carrier density is higher for sine-driven DBDs, i.e. the positive streamer starts in a highly pre-ionised environment, which leads to a lower propagation velocity. In addition to limiting the pre-phase (lower pre-ionisation), the steep voltage slope of the pulsed DBD amplifies the streamer breakdown because the applied voltage rises significantly during its propagation. Therefore, the transferred electrical charge and the electrical power of a single DBD can be controlled by the applied voltage amplitude, but only in pulsed operation. In addition to the effects of different voltage slope steepness, the pulse width is an excellent parameter in the pulsed operation to set the pre-ionisation, by shifting the DBDs into the after-glow of the previous discharge using asymmetrical HV pulse waveforms. The subsequent DBDs ignite in different pre-ionised conditions, defined by the residual charge carrier densities in the gap that originated from the previous DBD. The breakdown characteristics of these DBDs could be controlled down to the fundamental level. This thesis has described for the first time four different breakdown regimes in single filament DBDs for 0.1 vol% N2 in O2 and connected them to the processes during their pre-phases. The “classic” DBD development (a cathode-directed streamer followed by a transient glow discharge) could be controlled in a certain range, followed by a transition first to a breakdown regime featuring a simultaneous propagation of a cathode- and an anode-directed streamer, and finally to a reignition of the previous DBDs without any propagation, just by reducing the pulse width (time between two subsequent DBDs), i.e. increasing the pre-ionisation level. All differences between the DBDs at rising and falling slopes could be explained by the different pre-conditions in the gap. The O2 concentration in the N2-O2 gas mixtures offers another way of controlling the pre-ionisation. Due to the electron attachment as a consequence of the electronegativity of oxygen, the electron density decreases for higher O2 admixtures. Furthermore, the differences in the first Townsend ionisation coefficient and in the photo-ionisation between N2 and O2 influence the DBD behaviour as well. To some extent, some of the reported effects achieved by varying the pulse width at a fixed O2/N2 ratio were also observed for a fixed pulse width and changing O2 concentration. Hence, the response of the DBD properties to changing pre-ionisation levels seems to be a general principle of DBD control. Additional effects of the O2/N2 ratio, such as an increasing DBD inception jitter or higher streamer velocities, were also reported. Finally, a reverse of the effects induced by the O2 admixture such as DBD emission duration or DBD inception delay, was observed for O2 concentrations below 0.01 vol%, and were especially pronounced at a pressure of 0.5 bar. For 0.1 vol% O2 in N2, a minimal electron recombination rate was found, which can be explained by the different decay and recombination rates of positive nitrogen and oxygen ions. These different rates effect the charge carrier dynamics and consequently, the pre-ionisation in the gap. In conclusion, this investigation has highlighted the importance of volume memory processes on the breakdown and development of single filament DBDs at elevated pressures.
Liu–II coal pit is a typical example of China’s deep coal mines which is seriously threatened by groundwater inrush from the underlying carboniferous Taiyuan limestone formation. An exhaustive data set of this confined aquifer exists. The aquifer lies 45 m∼ 60 m below the major coal seam. A traditional artesian aquifer test has been performed in order to assess the hydraulic properties, e.g. transmissivity (T) and storage coefficient (S). This artesian aquifer test is conducted with four simultaneously operating production wells while the discharge of each production well varied with time. The results of this test suggest that the aquifer is heterogeneous. Therefore, the according problems are: (1) how to analyze the artesian aquifer test with linearly declining discharge; (2) how to deal with multiple production wells in an aquifer test; (3) how to adequately consider aquifer heterogeneity. Thus, the objective of this thesis is to solve these problems. 1) As opposed to classical above-ground pumping tests, it is difficult to control the discharge rate of the production well in a deep mine artesian aquifer test since the hydraulic pressure is extraordinary high. Moreover the discharge rate won’t descend rapidly to zero, thus the analytical solution of Jacob and Lohman (1952) type curve for the artesian aquifer test will not be applicable. It is more reasonable to analyze the test as a pumping test with variable discharge. It is considered to rebuild a hydrogeological conceptual model which is similar with Theis (1935) model but with the variable discharge. A general equation for any discharge variability is given. Its application for the linearly declining discharge is presented subsequently, and a type curve of this equation with linearly declining discharge is given as well. After that, a simple numerical model is built by FEFLOW to simulate an artificial pumping test with the linearly declining discharge by assigning different parameter sets for transmissivity and storage coefficient. The type curve method is applied to evaluate transmissivity and storage coefficient for the linearly declining discharge well. The deviation between the given values of transmissivity and storage coefficient in FEFLOW and the values of those calculated by matching point are sufficiently small. Thus, when the discharge of production well declines linearly, a type curve method as an empirical method is reasonable and gives satisfactory values of these hydrogeological parameters. 2) In some cases, it is necessary to conduct a pumping test (or an artesian aquifer test) with several pumping wells (or production wells) which work simultaneously in order to discharge maximum quantity of groundwater. Normally, the superposition method or numerical simulation is applied to analyze the test result. However, a new approach called “Well Generalization Method” is defined and analyzed in this thesis. It is an easy–to–use approach for hydrogeologist to estimate the aquifer parameters while conducting an aquifer test. Since the key point of this approach is using a generalization well to substitute the pumping (or production) wells, it is obvious that this approach will generate the estimated error of parameters. Accordingly, several scenarios are analyzed and discussed based on the artificial type aquifer designed in FEFLOW. A homogeneous aquifer and a heterogeneous aquifer which is generated by geostatistical stochastic simulation technique (see 3)) are discussed separately. As a result, this approach is feasible and applicable under some conditions when the calculated observation well is arranged more than about 2.5 times the scale of the multi–pumping–wells field away from the center of the multi–pumping–wells field, furthermore, the maximum deviation of drawdown resulting from these observation wells will be less than 0.5 m, and the estimated value of transmissivity will be 0.44% smaller than real value. 3) Finally aquifer heterogeneity is addressed, in order to check the introduced method for applicability under realistic conditions. It has been described that aquifer heterogeneity plays a major role in hydrodynamic processes (e.g. de Marsily et al., 1998). Geostatistics which is considered as a useful tool for characterizing the spatial variability of transmissivity is applied to solve this problem. Based on the results of the artesian aquifer test conducted in Liu–II coal pit, a model of spatial variability of transmissivity is developed. Sequentially, the variogram model is applied in ordinary kriging to interpolate the transmissivity distribution, and in sequential Gaussian simulation to simulate a random field of transmissivity data in order to reflect its small scale variability. A comparison of the results of estimation and simulation of transmissivity indicates that the simulated values better reflect the spatial variability, reversely, the estimated values are much smoother.
This thesis revolves around a new concept of independence of algebras. The independence nicely fits into the framework of universal products, which have been introduced to classify independence relations in quantum probability theory; the associated product is called (r,s)-product and depends on two complex parameters r and s. Based on this product, we develop a theory which works without using involutive algebras or states. The following aspects are considered: 1. Classification: Universal products are defined on the free product of algebras (the coproduct in the category of algebras) and model notions of independence in quantum probability theory. We distinguish universal products according to their behaviour on elements of length two, calling them (r,s)-universal products with complex parameters r and s respectively. In case r and s equal 1, Muraki was able to show that there exist exactly five universal products (Muraki’s five). For r equals s nonzero we get five one parameter families (q-Muraki’s five). We prove that in the case r not equal to s the (r,s)-product, a two parameter deformation of the Boolean product, is the only universal product satisfying our set of axioms. The corresponding independence is called (r,s)-independence. 2. Dual pairs and GNS construction: By use of the GNS construction, one can associate a product of representations with every positive universal product. Since the (r,s)-product does not preserve positivity, we need a substitute for the usual GNS construction for states on involutive algebras. In joint work with M. Gerhold, the product of representations associated with the (r,s)-product was determined, whereby we considered representations on dual pairs instead of Hilbert spaces. This product of representations is - as we could show - essentially different from the Boolean product. 3. Reduction and quantum Lévy processes: U. Franz introduced a category theoretical concept which allows a reduction of the Boolean, monotone and antimonotone independence to the tensor independence. This existing reduction could be modified in order to apply to the (r,s)-independence. Quantum Lévy processes with (r,s)-independent increments can, in analogy with the tensor case, be realized as solutions of quantum stochastic differential equations. To prove this theorem, the previously mentioned reduction principle in the sense of U. Franz and a generalization of M. Schürmann’s theory for symmetric Fock spaces over dual pairs are used. As the main result, we obtain the realization of every (r,s)-Lévy process as solution of a quantum stochastic differential equation. When one, more generally, defines Lévy processes in a categorial way using U. Franz’s definition of independence for tensor categories with inclusions, compatibility of the inclusions with the tensor category structure plays an important role. For this thesis such a compatibility condition was formulated and proved to be equivalent to the characterization proposed by M. Gerhold. 4. Limit distributions: We work with so-called dual semigroups in the sense of D. V. Voiculescu (comonoids in the tensor category of algebras with free product). The polynomial algebra with primitive comultiplication is an example for such a dual semigroup. We use a "weakened" reduction which we call reduction of convolution and which essentially consists of a cotensor functor constructed from the symmetric tensor algebra. It turns dual semigroups into commutative bialgebras and also translates the convolution exponentials. This method, which can be nicely described in the categorial language, allows us to formulate central limit theorems for the (r,s)-independence and to calculate the correponding limit distributions (convergence in moments). We calculate the moments appearing in the central limit theorem for the (r,s)-product: The even moments are homogeneous polynomials in r and s with the Eulerian numbers as coefficients; the odd moments vanish. The moment sequence that we get from the central limit theorem for an arbitrary universal product is the moment sequence of a probability measure on the real line if and only if r equals s greater or equal to 1. In this case we present an explicit formula for the probability measure.
The influence of regulatory proteins on the physiology and virulence of Streptococcus pneumoniae
(2015)
In conclusion, this work identifies the regulator ArgR2 as activator of the S. pneumoniae TIGR4 arginine deiminase system and arginine-ornithine transporter ArcD, which is needed for uptake of the essential amino acid arginine. Although ArgR2 activates ArcD expression and uptake of arginine is required to maintain pneumococcal fitness, the deficiency of ArgR2 increases TIGR4 virulence under in vivo conditions, suggesting that other factors regulated by ArgR2 counterbalance the reduced uptake of arginine by ArcD. Thus this works illustrates that the physiological homeostasis of pneumococci is complex and that ArgR2 plays a key role in maintaining bacterial fitness. Moreover, Rex was identified as a regulator of housekeeping genes including genes encoding glycolytic enzymes. In vitro studies and gene expression analyses suggested that the regulator Rex does not have an influence on the physiology of S. pneumoniae. However, a co-infection experiment demonstrated that Rex is involved in maintaining pneumococcal fitness and robustness under in vivo conditions.
HPMC (Hydroxypropylmethylcellulose) based hydrophilic gel matrix tablets are one of the most commonly used monolithic extended release dosage forms used in the pharmaceutical industry. Drug release from the hydrated HPMC matrix is generally controlled by either diffusion or erosion, or a combination of both. Several studies have shown that for HPMC-based matrices with a high amount of poorly water-soluble additives, erosion is the predominant release mechanism. Erosion rates of these formulations vary significantly with changes in the matrix composition. Depending on the erosion rate, the drug delivery might occur over a shorter or longer time span and thus to different sites of action that are proximal or distal gastrointestinal tract (GIT). Erosion rates of HPMC-based matrices can be modulated by changing the amount and molecular weight of the HPMC. In the present study, four different HPMC-based hydrophilic matrix formulations developed by AstraZeneca R&D, Sweden, were investigated for in vitro as well as in vivo erosion behavior. Formulations F1, F2, and F3 consist of 40% HPMC, which is a mixture of two different HPMC viscosity grades (Methocel K100LV and Methocel K4M). Formulations F1, F2, and F3 contained 23%, 10%, and 0% of Methocel K4M, respectively, while formulation F4 was composed of 20% Methocel K100LV. Calcium hydrogen phosphate dihydrate (a poorly water-soluble compound) was used as the filling excipient. The in vitro HPMC release from the matrices was investigated using a USP dissolution apparatus II equipped with a stationary basket in a phosphate buffer (PB) pH 6.8 and simulated gastric fluid without pepsin (SGFsp) pH 1.2 at various rotation speeds. The HPMC concentration in the dissolution samples were analyzed using size exclusion chromatography coupled with multiangle light scattering and refractive index detectors (SEC-MALS/RI). In order to establish a correlation function between the magnetic moment and HPMC release, the formulations were tested in a magnetic moment dissolution tester (MMDT), a modified in vitro dissolution apparatus equipped with a magnetometer. The in vivo gastrointestinal imaging and erosion behavior of the tablets were investigated by magnetic marker monitoring (MMM) using a superconducting quantum interference devices (SQUIDs) sensor system in five healthy male volunteers at Physikalisch-Technische Bundesanstalt (PTB), Berlin. All formulations were administered after an overnight fast of at least 10 hours. However, formulations 3 and 4 were also administered 30 minutes after a standard FDA breakfast. The in vivo HPMC release was calculated using the correlation function from the recorded in vivo magnetic moment data. A linear correlation function was not observed, since the decrease of the magnetic signal was driven by both erosion and diffusion. The in vitro and in vivo erosion-time profiles show that erosion was strongly dependent on the composition of the formulation. The formulations containing a larger proportion of high molecular weight HPMC, or a higher content of HPMC, exhibited relatively slower erosion rates and vice versa. However, unlike in vitro erosion rates, the in vivo erosion rates for different formulations did not always significantly differ from each other. In vivo erosion rates of the investigated formulations were significantly higher under postprandial administration than under fasted state administration. No rapid disintegration of any of the formulations (that is, formulation failure that can potentially cause dose dumping) was observed. A good linear (point-to-point) correlation between the in vitro HPMC release at 50 rpm in PB pH 6.8 and the in vivo HPMC release was observed for all formulations in the individual volunteers for both administration conditions. The predictability of the in vivo HPMC release for all formulations in fasting as well as postprandial administrations was better with phosphate buffer pH 6.8 at 50 rpm in comparison to SGFsp pH 1.2 or higher stirring rate in phosphate buffer pH 6.8. In postprandial administrations, the gastric emptying time was significantly delayed compared to fasting administrations. For postprandial administrations, the localized erosion rate in the distal stomach was significantly higher than in the proximal stomach. The in vivo HPMC release of the investigated formulations under both intake conditions was not dependent on the motility of the tablet in the gastrointestinal tract. The in vivo HPMC release for all the investigated formulations when administered under fasting conditions was underestimated, while under postprandial conditions, the HPMC release was overestimated by the in vitro dissolution method in PB pH 6.8 at 50 rpm.
We presented the prevalence of MIH in Dubai/UAE for the first time, which represents a developed Middle Eastern city and compared it to results obtained from Greifswald/Germany, which represents a developed European city. The results have shown that the prevalence of MIH in Dubai/UAE is higher than Greifswald/Germany. However, in comparison to the literature, the prevalence of MIH in Dubai is lower than other Middle Eastern cities. Furthermore, we have shown that there is a higher caries level associated with MIH in Dubai. This is also true in Greifswald, Germany and other international studies. In addition, we have reported the prevalence of caries and fluorosis in Dubai and compared them to Greifswald and the previous studies in Dubai. Nevertheless, caries values presented in this study and previous studies indicate that strong attention is required from health authority to this topic. This research provides a strong and comparable source of information on the prevalence of MIH in Dubai for other studies, since it followed strictly all methodological and clinical standards suggested for the assessment and diagnosis of MIH, which are the EAPD criteria. The findings presented in this study require particular attention from the local health authorities and general practitioners for such developmental defect to facilitate early and adequate diagnosis and treatment. This could be achieved by implementing continuing education courses on MIH detection, diagnosis, and treatment for general practitioners. Furthermore, this study has the potential to trigger new studies that would help in understanding the MIH etiology.
Streptococcus pneumoniae (pneumococci) are lancet-shaped, Gram-positive, alpha-hemolytic, facultative anaerobic human specific commensals of the upper and lower respiratory tract. Pneumococci may convert to pathogenic bacteria and spread to the lungs and blood. In different population groups, such as children, the elderly and immunocompromised individuals, pneumococci can cause local infections such as bronchitis, rhinitis, acute sinusitis, and otitis media as well as life-threatening invasive diseases such as community-acquired pneumonia, sepsis and meningitis. Pneumococci are surrounded by a rigid and complex exoskeleton, the peptidoglycan, also referred to as murein sacculus. The peptidoglycan (PNG) protects the cells from rupture by osmotic pressure and maintains their characteristic shape. The PNG is a heteropolymer made up of glycan strands that are cross-linked by short peptides and during growth the existing murein is continuously hydrolyzed by specific lytic enzymes to enable the insertion of new peptidoglycan. Bacterial cell-wall hydrolases are essential for peptidoglycan turnover and crucial to preserve cell shape. The D,D-carboxypeptidase DacA and L,D-carboxypeptidase DacB of Streptococcus pneumoniae function in a sequential manner. This study determined the crystal structure of the surface-exposed lipoprotein DacB, which differs considerably from the DacA structure. DacB contains a Zn2+ ion in its catalytic center located in the middle of a fully exposed, large groove. Two different conformations with differently arranged active site topology were identified. In addition the critical residues for catalysis and substrate specificity were identified. Deficiency in DacA or DacB resulted in a modified peptidoglycan peptide composition and led to an altered cell shape of the dac-mutants. In contrast, lgt-mutant lacking lipoprotein diacylglyceryl transferase activity required for proper lipoprotein maturation retained L,D-carboxypeptidase activity and showed an intact murein sacculus. Furthermore, this study demonstrated the pathophysiological effects of disordered DacA or DacB activities. Real-time bioimaging of intranasally infected mice indicated a substantially attenuated virulence of dacB- and dacAdacB-mutants pneumococci, while loss of function of DacA had no significant effect. In addition, uptake of these mutants by professional phagocytes was enhanced, while their adherence to lung epithelial cells was decreased. The second part of this study focused on the functional and structure determination of the soluble dimeric pneumococcal lipoprotein PccL. Because of its calycin fold and structural homology with the lipocalin YxeF from Bacillus subtilis, PccL was introduced as the first member of the lipocalin protein family in pneumococci and named “PccL” (Pneumococcal calycin fold containing Lipoprotein). Similar to other lipocalins, the distinct beta-barrel, which is open at one end, is significantly conserved in PccL. Moreover, the application of the in vivo acute pneumonia mouse infection model and the in vitro phagocytosis as well as adherence invasion studies revealed considerable differences in colonization and invasive infection between the wild-type D39 and the pccL-mutant. In conclusion, this study characterized the crucial role of pneumococcal carboxypeptidases DacA and DacB for PGN architecture, bacterial shape and pathogenesis. By applying in vivo and in vitro approaches, a close relationship between PGN metabolism and pathophysiological effects was discovered. In addition, the high resolution structure of DacB has been solved and analyzed and a structure model with a resolution of 2.0 Å is provided. Furthermore, analysis of the PGN composition was applied to indicate the impact of an impaired lipoprotein biogenesis pathway on localization and activity of DacB. The major impact of carboxypeptidases on cell shape and virulence proposes DacB as a promising target for the development of novel drugs or due to its surface exposition also as a promising vaccine candidate. PccL is the first pneumococcal lipocalin-like protein and this study indicated its contribution to pneumococcal virulence. However, the mechanism and the mode of action of PccL are still unknown and have to be deciphered in further studies.